BAC Information

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BAC

Clone NameB6Ng01-006N12
Chromosome6 (Build37)
Map Location 90,260,882 - 90,261,894
singlet/doubletsinglet
Overlap geneChst13
Upstream genePlxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671
Downstream geneUroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N12.bB6Ng01-006N12.g
ACCDH843586DH843587
length1,2461,007
definitionDH843586|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N12, 5' end.DH843587|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagataaattgctcttatgaacattgatgcaaaaagtaaaatac
ttgcaacacgaatccaagaacacatcaaaaagatcatttatcatcatagt
aaagtaggtttcatcccagacttatagggatgattcacatatggaaatct
atcaatgtaatctaccatataatcaaactggaagtaaaaattcaaatgat
catctcattagactctgaaaaaggtttttaaaaagtacaaccctgttcat
gatataagtcatgaagagatcagggataaaatacacatacctaaacatag
taaaagtgatatacagcaagttgacagccaacatcaaattaaatggagag
aaatttaaatcaattcctctaaaatcagggacaagaaaaagtttcccact
agttttctctccaatatagtacttgaagttctgattaaagcaataagaca
atgaaaggagatcgagggggtacaaattggaaaagaagaagtcaaagtat
cactatcggtggatgatatgatagtatacttaagtgactccaaaacctcc
accagagaactcctagagctgataaacaccttcagcaaagtagctggata
caaatgtactcaaagaaatttttacaagtaataagtgttctgagaaagaa
attagggggaaaacaccctttgcgatacccatgaatgatataaaatatct
tttagtaagtctaagtaagtgaaagatatgtatgacaggaacttcgagtc
tctgaagaaagaacctgaagaaaacatcagaagaaggaaaggtcccccat
gatcatggatctgcagggttaacatagtgaaaatggaaatttaccaaaag
caatctatagatttaatgcaattccagtcaaaattccaacacaatttttc
acagacatagaaagagcaattcccaatttcatatgaaaagacaaaaaaca
aacaataaacaacaacacaacaacaaaacggataccaaactactctgaag
tataaaagaatttggtaggattaaccatcctgacctcagatgtaccacag
agcaacagtgatttaaacttctgataaaaacatacatggtatgcactcac
tggataagtgtattagctcgaagtttgaataccagtcaatttcagaccat
gaacttcggagaaagggagacaaatgtgatctcgtctctgaaggggagca
atatctatggagggattcgagaccagggatggggagagaaaccgat
gaattccttaacccttcacatgagctaacatcaaaatgcttaggcttacg
tctgagagaatgggccctaaagacctggcagccttctataactttctagc
aagcaggacacacactttccccatctctggcactctaatccttctctcct
tcttcaaccccagctcttcaccctctctctggtctttccttgcccttctt
cctgccctggccattctccaaagtttagctgcctggcaactggctacctt
gcccttcagctcaggtgcagcagttgccctccctcctctgagctgcctct
cctgccctctccctgctatcatctcagcccacaatacagaaaggaggcaa
gaaaagaccctctatagaaggacccaatgctgcaatagcagaacagtgca
gagggtcttacagagaagcagtcagccttctgctcacacagcccaagaag
gggcactggtaccaaacagccatttgttttttagcatgccacaggcagag
aggcttggattgggaacatttaaagacctggggcacaggaatagatgaga
atagacattttgccctccctgcgacccaggtagaaatggctgctgggttt
ccagctctgtaataacggaagtctggaaaataaaacagttcccctacccc
tggttgaagctgtgccttcaggagccaggggaagcagctggggtctttgt
agttttctcaaggtgtctgtagcgtgttcaggatgcccctgctggcatag
ggggagttttggctatctgcttgctatccctttacacagcagagccaggg
gaagtctggcagcttctaatagggacccaaattactcactccccaaagtc
tttgattttttctgagaaaacgaacagcagatggtggaacgactatcatt
tacactttgagtactagtagactttaacagggtctgcttggaagtagtta
cacctcctccggctcatatctatgcaggtggattgcagcagggcgtaatc
tagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_90260882_90261894
seq2: B6Ng01-006N12.g_70_1076 (reverse)

seq1  ATCTCTAAGATTAGCCCCTGCTGCCATTCCACCTGCATAGATATGAGCCG  50
      |||||| ||||||  |||||||| || |||||||||||||||||||||||
seq2  ATCTCT-AGATTACGCCCTGCTG-CAATCCACCTGCATAGATATGAGCCG  48

seq1  GAGGAGGTGTAACTACTTCCAGTGCAGGGCCCTGTTAAAGTCTACTAGTT  100
      |||||||||||||||||||||  ||| | ||||||||||||||||||| |
seq2  GAGGAGGTGTAACTACTTCCA-AGCA-GACCCTGTTAAAGTCTACTAG-T  95

seq1  ACTCAAAGTGTTAATGATAGTCGTACCACCCTTCTGCTGTTCGTTTTCTC  150
      ||||||||||| |||||||||||| ||| || ||||||||||||||||||
seq2  ACTCAAAGTGTAAATGATAGTCGTTCCA-CCATCTGCTGTTCGTTTTCTC  144

seq1  AGAAAATAATCAAAGACTTTGGGGAGTGAGTAATTTGGGTCCCTAATTAG  200
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAAA-AATCAAAGACTTTGGGGAGTGAGTAATTTGGGTCCCT-ATTAG  192

seq1  AAGCTGCCAGACTTCCCCTGGCTCTGCTGTGTAAAGGGATAGCAAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCCAGACTTCCCCTGGCTCTGCTGTGTAAAGGGATAGCAAGCAGA  242

seq1  TAGCC-AAACTCCCCCTATGCCAGCAGGGGCATCCTGAACACGCTACAGA  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAACTCCCCCTATGCCAGCAGGGGCATCCTGAACACGCTACAGA  292

seq1  CACCTTGAGAAAACTACAAAGACCCCAGCTGCTTCCCCTGGCTCCTGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGAAAACTACAAAGACCCCAGCTGCTTCCCCTGGCTCCTGAAG  342

seq1  GCACAGCTTCAACCAGGGGTAGGGGAACTGTTTTATTTTCCAGACTTCCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTTCAACCAGGGGTAGGGGAACTGTTTTATTTTCCAGACTTCCG  392

seq1  TTATTACAGAGCTGGAAACCCAGCAGCCATTTCTACCTGGGTCGCAGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAGAGCTGGAAACCCAGCAGCCATTTCTACCTGGGTCGCAGGGA  442

seq1  GGGC-AAATGTCTATTCTCATCTATTCCTGTGCCCCAGGTCTTTAAATGT  498
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAATGTCTATTCTCATCTATTCCTGTGCCCCAGGTCTTTAAATGT  492

seq1  TCCCAATCCAAGCCTCTCTGCCTGTGGCATGCTAAAAAACAAATGGCTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCCAAGCCTCTCTGCCTGTGGCATGCTAAAAAACAAATGGCTGT  542

seq1  TTGGTACCAGTGCCCCTTCTTGGGCTGTGTGAGCAGAAGGCTGACTGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCAGTGCCCCTTCTTGGGCTGTGTGAGCAGAAGGCTGACTGCTT  592

seq1  CTCTGTAAGACCCTCTGCACTGTTCTGCTATTGCAGCATTGGGTCCTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAGACCCTCTGCACTGTTCTGCTATTGCAGCATTGGGTCCTTCT  642

seq1  ATAGAGGGTCTTTTCTTGCCTCCTTTCTGTATTGTGGGCTGAGATGATAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGGTCTTTTCTTGCCTCCTTTCTGTATTGTGGGCTGAGATGATAG  692

seq1  CAGGGAGAGGGCAGGAGAGGCAGCTCAGAGGAGGGAGGGCAACTGCTGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGGGCAGGAGAGGCAGCTCAGAGGAGGGAGGGCAACTGCTGCA  742

seq1  CCTGAGCTGAAGGGCAAGGTAGCCAGTTGCCAGGCAGCTAAACTTTGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTGAAGGGCAAGGTAGCCAGTTGCCAGGCAGCTAAACTTTGGAG  792

seq1  AATGGCCAGGGCAGGAAGAAGGGCAAGGAAAGACCAGAGAGAGGGTGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCAGGGCAGGAAGAAGGGCAAGGAAAGACCAGAGAGAGGGTGAAG  842

seq1  AGCTGGGGTTGAAGAAGGAGAGAAGGATTAGAGTGCCAGAGATGGGGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGTTGAAGAAGGAGAGAAGGATTAGAGTGCCAGAGATGGGGAAA  892

seq1  GTGTGTGTCCTGCTTGCTAGAAAGTTATAGAAGGCTGCCAGGTCTTTAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCCTGCTTGCTAGAAAGTTATAGAAGGCTGCCAGGTCTTTAGG  942

seq1  GCCCATTCTCTCAGACGTAAGCCTAAGCATTTTGATGTTAGCTCATGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTCTCTCAGACGTAAGCCTAAGCATTTTGATGTTAGCTCATGTGA  992

seq1  AGGGTTAAGGAATTC  1013
      |||||||||||||||
seq2  AGGGTTAAGGAATTC  1007