BAC Information

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BAC

Clone NameB6Ng01-007I11
Chromosome6 (Build37)
Map Location 67,022,631 - 67,186,401
singlet/doubletdoublet
Overlap geneE230016M11Rik, EG667310
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a
Downstream geneLOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007I11.bB6Ng01-007I11.g
ACCDH844069DH844070
length547957
definitionDH844069|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I11, 5' end.DH844070|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,022,631 - 67,023,177)(67,185,444 - 67,186,401)
sequence
gtatgggatgggaggaggaggcgagtggtctcacggggaaggcagtttga
acatattcaaaatcacattctcacagacagccgggggtcacccttaacac
tcccaggctatcaagtgttagtggacacactggaactaatgaggctcata
aggggacaagcagtactaatgagcacaatctagtacaggtgtaccagcgt
gggagcgctagacagcttcacggaacagctggaagaagtacagtagccga
cagccaacagctgctgcccctctgcagcccaccgctgttgtctgtcacac
agaggtgacactccctgcgagttccagaccagagtcagagcatgttggtg
gcagcagagctgggtcattactgacctgacataggagtgtcaggtacatc
agcctgcccacaccttctcagaggtgccccgcctcctggagcttcctgtc
cggtctctcttcacttttcttccacattgctgtaccctgtgtgaggcacg
ccctgcctgctcttttttgggaatgggaatgagggagaggaagggca
gaattcactttgtagaccaggctggcctcaaactcagagatctgcctgcc
tctgtctccaagtgctgggattaaaggcatgcgctaccactgctcagcaa
ggttttaattccttgtcctaaacacgagttttatagtacctgatagaaaa
cactcatagttgatgtttcctacatgagtatatggaaataattgaataaa
gaggtgactcagatggtttgctgcactcatattttgttgcaatttacagg
caaaaatacctctgtgggagagagatgttttaatctagcataaaagatgc
tgagaggtagggggtatgttctccagcaaacattcccaactctgaagttg
ccatgtgcattgaactatttcccatcatcaaccataataatgctgaggag
gacgttaatcatgctgtttataggtttgtaaatgcatttcttccaaagac
ctcaagtgtttaatggacatgacctaatttaccctcacaagtctagcctc
ctttaatagatgaggaaaccgaggcataaagaagctgagtaacttcttca
aggtcaagcatgttcctagggaacggagccagatgccagacctctgctgt
ttctgcctagctctgtctctctagaccttgaagatgatgtgcatgcatcc
catggcactaggtgcttctgtgtctaccccttgcccattgcatagccagt
gatcaggaatggttattttatgttcctgaggaaggaacttctttaatatt
gctaaaatattaactatatagcatgtctctttgagagacaattttttgct
tatatgttaagatggcataaataaatataaattttggattgataagggaa
gcatagattggggatatcgttttctcagttgaaagccagtcacatggagc
cccttccaagtaaggcattgagttgatcatctttcttatgctggcattga
acgtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67022631_67023177
seq2: B6Ng01-007I11.b_58_604

seq1  GTATGGGATGGGAGGAGGAGGCGAGTGGTCTCACGGGGAAGGCAGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGATGGGAGGAGGAGGCGAGTGGTCTCACGGGGAAGGCAGTTTGA  50

seq1  ACATATTCAAAATCACATTCTCACAGACAGCCGGGGGTCACCCTTAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCAAAATCACATTCTCACAGACAGCCGGGGGTCACCCTTAACAC  100

seq1  TCCCAGGCTATCAAGTGTTAGTGGACACACTGGAACTAATGAGGCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCTATCAAGTGTTAGTGGACACACTGGAACTAATGAGGCTCATA  150

seq1  AGGGGACAAGCAGTACTAATGAGCACAATCTAGTACAGGTGTACCAGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAAGCAGTACTAATGAGCACAATCTAGTACAGGTGTACCAGCGT  200

seq1  GGGAGCGCTAGACAGCTTCACGGAACAGCTGGAAGAAGTACAGTAGCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGCTAGACAGCTTCACGGAACAGCTGGAAGAAGTACAGTAGCCGA  250

seq1  CAGCCAACAGCTGCTGCCCCTCTGCAGCCCACCGCTGTTGTCTGTCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAACAGCTGCTGCCCCTCTGCAGCCCACCGCTGTTGTCTGTCACAC  300

seq1  AGAGGTGACACTCCCTGCGAGTTCCAGACCAGAGTCAGAGCATGTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGACACTCCCTGCGAGTTCCAGACCAGAGTCAGAGCATGTTGGTG  350

seq1  GCAGCAGAGCTGGGTCATTACTGACCTGACATAGGAGTGTCAGGTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGCTGGGTCATTACTGACCTGACATAGGAGTGTCAGGTACATC  400

seq1  AGCCTGCCCACACCTTCTCAGAGGTGCCCCGCCTCCTGGAGCTTCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCCACACCTTCTCAGAGGTGCCCCGCCTCCTGGAGCTTCCTGTC  450

seq1  CGGTCTCTCTTCACTTTTCTTCCACATTGCTGTACCCTGTGTGAGGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTCTCTTCACTTTTCTTCCACATTGCTGTACCCTGTGTGAGGCACG  500

seq1  CCCTGCCTGCTCTTTTTTGGGAATGGGAATGAGGGAGAGGAAGGGCA  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTGCTCTTTTTTGGGAATGGGAATGAGGGAGAGGAAGGGCA  547

seq1: chr6_67185444_67186401
seq2: B6Ng01-007I11.g_66_1022 (reverse)

seq1  AGTACGTCCAATGCCAAGCATAAGAAAAGATGATCAACTCAAATGCCTTA  50
      ||||||| ||||||| |||||||| ||||||||||||||| |||||||||
seq2  AGTACGTTCAATGCC-AGCATAAG-AAAGATGATCAACTC-AATGCCTTA  47

seq1  CTTTGGGAGGGGCTCCTGTTGACTGGCTTTC-ACTGAGAAAACGATATTC  99
      | |||| |||||||||   |||||||||||| |||||||||||||||| |
seq2  C-TTGGAAGGGGCTCCATGTGACTGGCTTTCAACTGAGAAAACGATATCC  96

seq1  CCAATCTATGCTTCCCTTATCAAT-CAAAATTTATATTTATTTATGCCAT  148
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAATCTATGCTTCCCTTATCAATCCAAAATTTATATTTATTTATGCCAT  146

seq1  CTTAACATATAAGC-AAAAATTGTCTCTCAAAGAGACATGCTATATAGTT  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTAACATATAAGCAAAAAATTGTCTCTCAAAGAGACATGCTATATAGTT  196

seq1  AATATTTTAGCAATATTAAAGAAGTTCCTTCCTCAGGAACATAAAATAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAGCAATATTAAAGAAGTTCCTTCCTCAGGAACATAAAATAAC  246

seq1  CATTCCTGATCACTGGCTATGCAATGGGCAAGGGGTAGACACAGAAGCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGATCACTGGCTATGCAATGGGCAAGGGGTAGACACAGAAGCAC  296

seq1  CTAGTGCCATGGGATGCATGCACATCATCTTCAAGGTCTAGAGAGACAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCCATGGGATGCATGCACATCATCTTCAAGGTCTAGAGAGACAGA  346

seq1  GCTAGGCAGAAACAGCAGAGGTCTGGCATCTGGCTCCGTTCCCTAGGAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCAGAAACAGCAGAGGTCTGGCATCTGGCTCCGTTCCCTAGGAAC  396

seq1  ATGCTTGACCTTGAAGAAGTTACTCAGCTTCTTTATGCCTCGGTTTCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGACCTTGAAGAAGTTACTCAGCTTCTTTATGCCTCGGTTTCCTC  446

seq1  ATCTATTAAAGGAGGCTAGACTTGTGAGGGTAAATTAGGTCATGTCCATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAAAGGAGGCTAGACTTGTGAGGGTAAATTAGGTCATGTCCATT  496

seq1  AAACACTTGAGGTCTTTGGAAGAAATGCATTTACAAACCTATAAACAGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTGAGGTCTTTGGAAGAAATGCATTTACAAACCTATAAACAGCA  546

seq1  TGATTAACGTCCTCCTCAGCATTATTATGGTTGATGATGGGAAATAGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACGTCCTCCTCAGCATTATTATGGTTGATGATGGGAAATAGTTC  596

seq1  AATGCACATGGCAACTTCAGAGTTGGGAATGTTTGCTGGAGAACATACCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACATGGCAACTTCAGAGTTGGGAATGTTTGCTGGAGAACATACCC  646

seq1  CCTACCTCTCAGCATCTTTTATGCTAGATTAAAACATCTCTCTCCCACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCTCAGCATCTTTTATGCTAGATTAAAACATCTCTCTCCCACAG  696

seq1  AGGTATTTTTGCCTGTAAATTGCAACAAAATATGAGTGCAGCAAACCATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTTGCCTGTAAATTGCAACAAAATATGAGTGCAGCAAACCATC  746

seq1  TGAGTCACCTCTTTATTCAATTATTTCCATATACTCATGTAGGAAACATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACCTCTTTATTCAATTATTTCCATATACTCATGTAGGAAACATC  796

seq1  AACTATGAGTGTTTTCTATCAGGTACTATAAAACTCGTGTTTAGGACAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAGTGTTTTCTATCAGGTACTATAAAACTCGTGTTTAGGACAAG  846

seq1  GAATTAAAACCTTGCTGAGCAGTGGTAGCGCATGCCTTTAATCCCAGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAACCTTGCTGAGCAGTGGTAGCGCATGCCTTTAATCCCAGCAC  896

seq1  TTGGAGACAGAGGCAGGCAGATCTCTGAGTTTGAGGCCAGCCTGGTCTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACAGAGGCAGGCAGATCTCTGAGTTTGAGGCCAGCCTGGTCTAC  946

seq1  AAAGTGAATTC  958
      |||||||||||
seq2  AAAGTGAATTC  957