BAC Information

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BAC

Clone NameB6Ng01-008F04
Chromosome6 (Build37)
Map Location 33,792,623 - 33,905,455
singlet/doubletdoublet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F04.bB6Ng01-008F04.g
ACCDH844615DH844616
length1,138513
definitionDH844615|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F04, 5' end.DH844616|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,904,308 - 33,905,455)(33,792,623 - 33,793,141)
sequence
gaattcaaaagtggtttctacaacacgattcacccagaatagcagaatca
ataagtgggcatgcaagatttgccagggtttctcatctcgttttccggat
tgggctggatgcttacctgttctccttccccagcatgtttgaggcgggtg
cactctgatctttctgttttagtctctttgtgagcacttctcagtaaata
ccaccatagactctgtgatcacaatctcttgccctattctgtctactagt
atatgtatacacacttgtgtgcgcatatgcactctcaaacacacatgctc
atgcatgcccacagatagctgccttgaggcagcagggggatgaggatttt
taaagcctttaaatgaagactgtagctgttgttggactaaacacagatac
agagtaattaaaaagctcttcaaagaatagaataagtccattaaatccag
ttaaataatttttcagaaataccaccagagatacttcttgctgtttcctc
ccctcacaatgactggaggaggaatatctcattttccaaatggaacttta
tggagttttcaataagtcccctcagcacttatctaaatctttaattagtt
ctataatatactgatgatatcaagcctaattaaatttatatagataaggc
gcaatgaaattctaccaagtgagctggaaagcatatattaaacagtaaat
ttaatggttcaagctgataactacaattttatatcaaaaaattaaattca
atttacatgttatattcaaattgattttgagtgtgcaaattattggaaaa
aatctctgaaatatatcagtaaaattgctaatctagcctacttaaatatc
agttattaatgcctgcatttgcaaataagccacacacatttgcattttta
ctgagtataataaaaaaattatctaaaccttatgctattttgttaaaaat
attcagtaaatttttttttcttttgactcatgcataattaaagagttgaa
atgaccactgatctaagagagtcagcattcacacaagcaaataagatgac
tataattctttgccactaaagcagtttatattgttctcatggacaaatca
caatgccaaattctctctcttagaaccactagagtaaa
actctgtaactagttctttccttttaacccgtcccattctttttctagat
tagatgttgaaaccatgtaagtagaagagagacctttcactgatactcca
gcaaaccagagttgacagagggccggatttagcacattgagtaccatata
gcactgtatgagccaaaaagactgcaaagttactctcctcctataattag
tttttaaagctcagaagactatttggtgaacagatgaatatagaatccag
tgtcctttgcattgagtaaaagctatgctctcttcattattaaatgaggc
ctttttctcttcttgtgttttaactgaaaaaaaaaaaaaaaaagatgtat
tatttcccagttcagcattgaatagatggaggaaaaaaaaactaggtcaa
gctagggctttaatagaacccttttgttcccaaagagctaaaagcaggct
ctcaagcccattgtctttgcgcctgtcatggtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33904308_33905455
seq2: B6Ng01-008F04.b_47_1184 (reverse)

seq1  TTTACTCTAGTTGGTCCTAAGAGAGA-ATTTTGCCATTGTGA-TTGTCCA  48
      |||||||||| |||| |||||||||| | |||| |||||||| |||||||
seq2  TTTACTCTAG-TGGTTCTAAGAGAGAGAATTTGGCATTGTGATTTGTCCA  49

seq1  TGAAGGACAATATAAACTGCTTTAGTTGGCAAAGATATAT-GTCATCTTT  97
      || || ||||||||||||||||||| |||||||||  ||| |||||| ||
seq2  TG-AGAACAATATAAACTGCTTTAG-TGGCAAAGAATTATAGTCATC-TT  96

seq1  ATTTGCTGTGTGTTGAATTGCTGACTCTTCTTTAGATCCAGTGGTCATTT  147
      ||||||| |||| |||| ||||||||||   |||||| ||||||||||||
seq2  ATTTGCT-TGTG-TGAA-TGCTGACTCT--CTTAGAT-CAGTGGTCATTT  140

seq1  TCCAACTCTTTAATTTATGCATGAGTCAAAAAGAAAAAAAAATTTACTGA  197
        ||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  --CAACTCTTTAA-TTATGCATGAGTC-AAAAGAAAAAAAAATTTACTGA  186

seq1  ATATTTTTAACAAAATAGCATAAGGTTTAGATAA-TTTTTTATTATACTC  246
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATTTTTAACAAAATAGCATAAGGTTTAGATAATTTTTTTATTATACTC  236

seq1  AGTAAAAATGCAAATGTGTGTGGCTTATTTGCAAATGCAGGCATTAATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATGCAAATGTGTGTGGCTTATTTGCAAATGCAGGCATTAATAA  286

seq1  CTGATATTTAAGTAGGCTAGATTAGCAATTTTACTGATATATTTCAGAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTAAGTAGGCTAGATTAGCAATTTTACTGATATATTTCAGAGA  336

seq1  TTTTTTCCAATAATTTGCACACTCAAAATCAATTTGAATATAACATGTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAATAATTTGCACACTCAAAATCAATTTGAATATAACATGTAA  386

seq1  ATTGAATTTAATTTTTTGATATAAAATTGTAGTTATCAGCTTGAACCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTAATTTTTTGATATAAAATTGTAGTTATCAGCTTGAACCATT  436

seq1  AAATTTACTGTTTAATATATGCTTTCCAGCTCACTTGGTAGAATTTCATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTGTTTAATATATGCTTTCCAGCTCACTTGGTAGAATTTCATT  486

seq1  GCGCCTTATCTATATAAATTTAATTAGGCTTGATATCATCAGTATATTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTTATCTATATAAATTTAATTAGGCTTGATATCATCAGTATATTAT  536

seq1  AGAACTAATTAAAGATTTAGATAAGTGCTGAGGGGACTTATTGAAAACTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAATTAAAGATTTAGATAAGTGCTGAGGGGACTTATTGAAAACTC  586

seq1  CATAAAGTTCCATTTGGAAAATGAGATATTCCTCCTCCAGTCATTGTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTTCCATTTGGAAAATGAGATATTCCTCCTCCAGTCATTGTGAG  636

seq1  GGGAGGAAACAGCAAGAAGTATCTCTGGTGGTATTTCTGAAAAATTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAACAGCAAGAAGTATCTCTGGTGGTATTTCTGAAAAATTATTT  686

seq1  AACTGGATTTAATGGACTTATTCTATTCTTTGAAGAGCTTTTTAATTACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATTTAATGGACTTATTCTATTCTTTGAAGAGCTTTTTAATTACT  736

seq1  CTGTATCTGTGTTTAGTCCAACAACAGCTACAGTCTTCATTTAAAGGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTGTGTTTAGTCCAACAACAGCTACAGTCTTCATTTAAAGGCTT  786

seq1  TAAAAATCCTCATCCCCCTGCTGCCTCAAGGCAGCTATCTGTGGGCATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCCTCATCCCCCTGCTGCCTCAAGGCAGCTATCTGTGGGCATGC  836

seq1  ATGAGCATGTGTGTTTGAGAGTGCATATGCGCACACAAGTGTGTATACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATGTGTGTTTGAGAGTGCATATGCGCACACAAGTGTGTATACAT  886

seq1  ATACTAGTAGACAGAATAGGGCAAGAGATTGTGATCACAGAGTCTATGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTAGACAGAATAGGGCAAGAGATTGTGATCACAGAGTCTATGGT  936

seq1  GGTATTTACTGAGAAGTGCTCACAAAGAGACTAAAACAGAAAGATCAGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTACTGAGAAGTGCTCACAAAGAGACTAAAACAGAAAGATCAGAG  986

seq1  TGCACCCGCCTCAAACATGCTGGGGAAGGAGAACAGGTAAGCATCCAGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCGCCTCAAACATGCTGGGGAAGGAGAACAGGTAAGCATCCAGCC  1036

seq1  CAATCCGGAAAACGAGATGAGAAACCCTGGCAAATCTTGCATGCCCACTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCGGAAAACGAGATGAGAAACCCTGGCAAATCTTGCATGCCCACTT  1086

seq1  ATTGATTCTGCTATTCTGGGTGAATCGTGTTGTAGAAACCACTTTTGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCTGCTATTCTGGGTGAATCGTGTTGTAGAAACCACTTTTGAAT  1136

seq1  TC  1148
      ||
seq2  TC  1138

seq1: chr6_33792623_33793141
seq2: B6Ng01-008F04.g_69_587

seq1  GAATTCACTCTGTAACTAGTTCTTTCCTTTTAACCCGTCCCATTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAACTAGTTCTTTCCTTTTAACCCGTCCCATTCTTTTT  50

seq1  CTAGATTAGATGTTGAAACCATGTAAGTAGAAGAGAGACCTTTCACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTAGATGTTGAAACCATGTAAGTAGAAGAGAGACCTTTCACTGAT  100

seq1  ACTCCAGCAAACCAGAGTTGACAGAGGGCCGGATTTAGCACATTGAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCAAACCAGAGTTGACAGAGGGCCGGATTTAGCACATTGAGTAC  150

seq1  CATATAGCACTGTATGAGCCAAAAAGACTGCAAAGTTACTCTCCTCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCACTGTATGAGCCAAAAAGACTGCAAAGTTACTCTCCTCCTAT  200

seq1  AATTAGTTTTTAAAGCTCAGAAGACTATTTGGTGAACAGATGAATATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTTAAAGCTCAGAAGACTATTTGGTGAACAGATGAATATAGA  250

seq1  ATCCAGTGTCCTTTGCATTGAGTAAAAGCTATGCTCTCTTCATTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGTCCTTTGCATTGAGTAAAAGCTATGCTCTCTTCATTATTAAA  300

seq1  TGAGGCCTTTTTCTCTTCTTGTGTTTTAACTGAAAAAAAAAAAAAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTTTTCTCTTCTTGTGTTTTAACTGAAAAAAAAAAAAAAAAAG  350

seq1  ATGTATTATTTCCCAGTTCAGCATTGAATAGATGGAGGAAAAAAAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATTTCCCAGTTCAGCATTGAATAGATGGAGGAAAAAAAAACTA  400

seq1  GGTCAAGCTAGGGCTTTAATAGAACCCTTTTGTTCCCAAAGAGCTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCTAGGGCTTTAATAGAACCCTTTTGTTCCCAAAGAGCTAAAAG  450

seq1  CAGGCTCTCAAGCCCATTGTCTTTGCGCCTGTCATGGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCAAGCCCATTGTCTTTGCGCCTGTCATGGTGTGTGTGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTG  519
      |||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTG  519