BAC Information

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BAC

Clone NameB6Ng01-008G18
Chromosome6 (Build37)X (Build37)
Map Location 44,656,125 - 44,656,931131,863,746 - 131,864,885
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G18.bB6Ng01-008G18.g
ACCDH844684DH844685
length8861,132
definitionDH844684|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G18, 5' end.DH844685|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,656,125 - 44,656,931)(131,863,746 - 131,864,885)
sequence
gaattctatagcaatatattagccaggcgtggtggcccacacctttaatc
ccagcactcgggaggcagaggcaggtgatttctgagtttgaggccagcct
ggtctacagagtgagttctaggacagccagagctatacagagaaaccaag
tcaaaaaaataaagaaagaaaagaaaagaaaagaaatatgttcatatcat
attgaaacaacattttctgtgactgagtccaaataaaaatgattattcat
atctaatatcccataattctgcggcttctggccttgactaacatggttct
ttttttttttttttttttccattttttattaggtatttagctcatttaca
tttccaatgctataccaaaagtcccccatacccacccacccccactcccc
tacctgcccactccccctttttggccctggcgttcccctgttctggggca
tataaagtttgtgtgtccaatgggcctctctttccagtgatggccgacta
ggccatcttttgatacatatgcagctagagtcaagagctccggggtactg
gttagttcataatgttgatccacctatagggttgcagatccctttagctc
cttgggtactttctctagctcctccattgggagccctgtgatccatccat
tagctgactgtgggcatccacttctgtgtttgctaggccccggcatagtc
tcacaagagacagctacatctgggtccttttcgataaaatcttgctagtg
tatgcaatggtgtcagcgtttggatgctgattatggggtggatccctgga
taaggcagtctctacatggtccaccctttaatcttcactccaaactttgt
ctctgtaactccttccaagggtgatttgttcccact
gaattcactgagttctcaggaactagagttctgaaccatctctcctgcaa
tggcctggcttttaagtcaaaaaaacgtattctctctctctcttttttta
aaatttcatatttttggtttttgagacagggtttctctgtgtagccctgg
ctgtcctggagctcactctgtagaccacactggccttgaactcagaaatc
ctccagcctctgcctcccaagtgctgggattaaaggcgtgcgccaccact
gcccagctaaacatttctgctcttttgtccactagatgtgaccttagttc
tgagtttgaagtctcgctgggagaaagtcaggcagtgcttaagtcatact
catattttccacgtaacttttcttgaaaaaagatgtaggcagatgcgtag
gtacctaaatgtgatttgccagtcaggacagggcctcgtagcctcgagaa
cagcagtgagctgaggtgagagaggtcagctgacccaagctaagccaata
ggaatcccccaggctgagcactaagtttgaaaaggaaccgttggggtcct
cagaggggcttttgaggacccgcgcccttgcacttgcgcgtgctttcaca
cgccccgcttttgaggatctcttgactagaaataagctgctgccgtgcga
caaaggtgccggaaaagtcagaagattctccctcccctctcactgaggta
catgacagacatttctttttaaattgaacttatttgggctgaatgacgta
gacacgaggtttggggacttaccgattttacaggtttttacgggttccgc
ctaggatgctcgaaggtcaattttgtgttaccgtctagaggcattggttc
ctgaggtgtgggtcacttcgattttgggatcaatcgcttcacggtctcta
tttaaatatccacacatcgtttcacttcttcctcaaagatttactttagg
cgaggtgtgatggtgttctggaggctgaagcaggggattttgcgttttgg
cacagccagggtacagagtaaggtttgtctcataaacaacgacaaaatga
aaagacagaaatcaactaacgaaacaaacttttttcatcctttacttgag
ttcatttctcagatgtagctttggggggcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44656125_44656931
seq2: B6Ng01-008G18.b_47_850

seq1  GAATTCTATAGCAATATATTAGCCAGGCGTGGTGGCCCACACCTTTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGCAATATATTAGCCAGGCGTGGTGGCCCACACCTTTAATC  50

seq1  CCAGCACTCGGGAGGCAGAGGCAGGTGATTTCTGAGTTTGAGGCCAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGCAGAGGCAGGTGATTTCTGAGTTTGAGGCCAGCCT  100

seq1  GGTCTACAGAGTGAGTTCTAGGACAGCCAGAGCTATACAGAGAAACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCTAGGACAGCCAGAGCTATACAGAGAAACCAAG  150

seq1  TCAAAAAAATAAAGAAAGAAAAGAAAAGAAAAGAAATATGTTCATATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAATAAAGAAAGAAAAGAAAAGAAAAGAAATATGTTCATATCAT  200

seq1  ATTGAAACAACATTTTCTGTGACTGAGTCCAAATAAAAATGATTATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACAACATTTTCTGTGACTGAGTCCAAATAAAAATGATTATTCAT  250

seq1  ATCTAATATCCCATAATTCTGCGGCTTCTGGCCTTGACTAACATGGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTAATATCCCATAATTCTGCGGCTTCTGGCCTTGACTAACATGGTTC-  299

seq1  TTTTTTTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATT  350
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ---TTTTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATT  346

seq1  TACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACT  396

seq1  CCCCTACCTGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCTGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGG  446

seq1  GGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCG  496

seq1  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGT  546

seq1  ACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCCTTTA  596

seq1  GCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCAT  646

seq1  CCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCAT  696

seq1  AGTCTCACAAGAGACAGCTACATCTGGGTCC-TTTCGATAAAATCTTGCT  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTCTCACAAGAGACAGCTACATCTGGGTCCTTTTCGATAAAATCTTGCT  746

seq1  AGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCC  796

seq1  TGGATAAG  807
      ||||||||
seq2  TGGATAAG  804

seq1: chrX_131863746_131864885
seq2: B6Ng01-008G18.g_66_1197

seq1  GAATTCACTGAGTTCTCAGGAACTAGAGTTCTGAACCATCTCTCCTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTTCTCAGGAACTAGAGTTCTGAACCATCTCTCCTGCAA  50

seq1  TGGCCTGGCTTTTAAGTCAAAAAAACGTATTCTCTCTCTCTCTTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGCTTTTAAGTCAAAAAAACGTATTCTCTCTCTCTCTTTTTTTA  100

seq1  AAATTTCATATTTTTGGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCATATTTTTGGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGG  150

seq1  CTGTCCTGGAGCTCACTCTGTAGACCACACTGGCCTTGAACTCAGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAGCTCACTCTGTAGACCACACTGGCCTTGAACTCAGAAATC  200

seq1  CTCCAGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACT  250

seq1  GCCCAGCTAAACATTTCTGCTCTTTTGTCCACTAGATGTGACCTTAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTAAACATTTCTGCTCTTTTGTCCACTAGATGTGACCTTAGTTC  300

seq1  TGAGTTTGAAGTCTCGCTGGGAGAAAGTCAGGCAGTGCTTAAGTCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAAGTCTCGCTGGGAGAAAGTCAGGCAGTGCTTAAGTCATACT  350

seq1  CATATTTTCCACGTAACTTTTCTTGAAAAAAGATGTAGGCAGATGCGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCCACGTAACTTTTCTTGAAAAAAGATGTAGGCAGATGCGTAG  400

seq1  GTACCTAAATGTGATTTGCCAGTCAGGACAGGGCCTCGTAGCCTCGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTAAATGTGATTTGCCAGTCAGGACAGGGCCTCGTAGCCTCGAGAA  450

seq1  CAGCAGTGAGCTGAGGTGAGAGAGGTCAGCTGACCCAAGCTAAGCCAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGAGCTGAGGTGAGAGAGGTCAGCTGACCCAAGCTAAGCCAATA  500

seq1  GGAATCCCCCAGGCTGAGCACTAAGTTTGAAAAGGAACCGTTGGGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCCCAGGCTGAGCACTAAGTTTGAAAAGGAACCGTTGGGGTCCT  550

seq1  CAGAGGGGCTTTTGAGGACCCGCGCCCTTGCACTTGCGCGTGCTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGCTTTTGAGGACCCGCGCCCTTGCACTTGCGCGTGCTTTCACA  600

seq1  CGCCCCGCTTTTGAGGATCTCTTGACTAGAAATAAGCTGCTGCCGTGCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGCTTTTGAGGATCTCTTGACTAGAAATAAGCTGCTGCCGTGCGA  650

seq1  CAAAGGTGCCGGAAAAGTCAGAAGATTCTCCCTCCCCTCTCACTGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGCCGGAAAAGTCAGAAGATTCTCCCTCCCCTCTCACTGAGGTA  700

seq1  CATGACAGACATTTCTTTTTAAATTGAACTTATTTGGGCTGAATGACGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGACATTTCTTTTTAAATTGAACTTATTTGGGCTGAATGACGTA  750

seq1  GACACGAGGTTTGGGGACTTACCGATTTTACAGGTTTTTACGGGTTCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGAGGTTTGGGGACTTACCGATTTTACAGGTTTTTACGGGTTCCGC  800

seq1  CTAGGATGCTCGAAGGTCAATTTTGTGTTACCGTCTAGAGGCATTGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATGCTCGAAGGTCAATTTTGTGTTACCGTCTAGAGGCATTGGTTC  850

seq1  CTGAGGTGTGGGTCACTTCGATTTTGGGACCAATCGCTTCACGGTCTCTA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGAGGTGTGGGTCACTTCGATTTTGGGATCAATCGCTTCACGGTCTCTA  900

seq1  TTTAAAATATTCCACACATCGTTTCACCTCTTCTTCAAAGATTTACTTTA  950
      ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||
seq2  TTT-AAATA-TCCACACATCGTTTCACTTCTTCCTCAAAGATTTACTTTA  948

seq1  GGCGAGGTGTGATGGTGTTCTGGAGGCTGAAGCAAGTGGATTTCGCGTTT  1000
      ||||||||||||||||||||||||||||||||| || |||||| ||||||
seq2  GGCGAGGTGTGATGGTGTTCTGGAGGCTGAAGC-AGGGGATTTTGCGTTT  997

seq1  TGGCACAGCCAGGGTACAGAGTTAGGTTTGTCTCAAAAACAAACAGACAA  1050
      |||||||||||||||||||||| |||||||||||| ||||||   |||||
seq2  TGGCACAGCCAGGGTACAGAGTAAGGTTTGTCTCATAAACAA--CGACAA  1045

seq1  AACAAAAAAACAAAAACAAACAAACAAAAACAAAACTTTTTTTCATCCTT  1100
      ||  |||| ||| |||  ||| |||  |||||||   |||||||||||||
seq2  AATGAAAAGACAGAAATCAACTAAC-GAAACAAA--CTTTTTTCATCCTT  1092

seq1  TACTTGAGTCTAGTTCCACAG-TGAAGCCTTAGGGGGCGGG  1140
      ||||||||| |  || | ||| || ||| || |||||||||
seq2  TACTTGAGT-TCATTTCTCAGATGTAGCTTTGGGGGGCGGG  1132