BAC Information

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BAC

Clone NameB6Ng01-008I03
Chromosome6 (Build37)
Map Location 83,558,021 - 83,732,539
singlet/doubletdoublet
Overlap geneClec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261
Upstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956
Downstream geneLOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008I03.bB6Ng01-008I03.g
ACCDH844739DH844740
length8551,109
definitionDH844739|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I03, 5' end.DH844740|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,731,711 - 83,732,539)(83,558,021 - 83,559,149)
sequence
gaattcaccacaaacagttatatagtgaatttgaggccagcctggggtac
aagagcatgtcaaagaaacaacataaaaataaaaaaagaaagaagaagat
gaggacagtgggaggaagactaggggctagggtagccaccttgtccagtt
tgctgatgactttcatagttttagcactgagagtctggtttcctaggaga
ctgcggtgggtcaccatacccactttctctgtgcttcagcttcttttgct
gtagaatgggtttacgagaataccatcattgtaagagggtgatgtgtgct
ggtcaggaggggtcgagaacaccaagcagtcctggaacatgcgggatcca
cagcatggagcttttctgcacagccccagtgggtcgatactggcccacgt
acttaggacagggcaggatgtcctcacaggcctcacgttgtctgcagtct
gtcctgtgactctgggcagcactagaaggcagacgagcagggtccccatc
ctccattccgctcaacaccccctcttctttctcctcatgagaaagggtcc
aacccttttctttcttgccttgagttccttcctgtcagggcaatgtctgg
agctgcttgaataaaggagaatgaaggggaacaactctgccagcctgact
gaggaggcttcctcaagaggagtgctctatgcctgcgccagccagccagg
ctacacccaccaatggtgtgcctctccctcttcctcttcctttttcttct
tcctctcttcttcctccctccctccccacctctctgtgttgctaataaaa
aatgtacaatatccctaagtcagttacagtcataaggtatagcaggagaa
acagc
gaattcataattaatcaggatacattgtatgaaaagtgtaaaaatgtttt
aaaaatttagagaaaaaataatgaaataaaaccttctagaaagcatttgg
tgcttatgatggtttgtatatgcttggcccagggagtggcactatttgga
ggtgtgaccttaagtaggtatgtcactgtgggcatgggctttaagaccct
catcctagctgcctggaagtcagtattctgctagcagccttcagatgaag
atgtagaactctcagctcctcctacacccttcctgcctggatgctgccat
acttctgccttgatgataatggactgatctgctgaacctgtaagccagcc
ccattaaatgttgtccttgtaagagttgccttggacactgagcagtggtg
gcacacacctttaatcccagcacacttgggaggcagaagcaggcggattt
ctgagttcgaggacagccttgtctacagagtgagttccaggacagcctgt
gtcagaaaaaaaaaaagttgccttggtcatgctgtctgctcacagtcgta
aaaccctaactaagacagttcatgaactaggataaccatgtgatttctac
ccttaagtccattggtttacatatcacattcattgatgtgtgtttatatt
gactcatcactatatctctgggaggttttaatgtttttcttgtattctgt
ttgcacatatttcaagaacaatttttgttgttgttgttgttgttctcaag
acagggtgtaataaccttgtctgtcttggacctgctttgtagactagact
agccttgaaaatatagagatctgctctgcccttggctccagaatgctggg
attaaaggcatgtgctaccatgcctgacctaatgaacaattttgtatcgt
tgattatcataagtctggattttctttggtcaattagagtaagttggaga
gtgaaaataactcaccctaaatggtgcttctaacagattggagtatgaat
ctttgtggctcagttctccagatgaaactcccatcctttgggaaaatgtg
gacctaagcattaactagcttctgaaaattctgaatctgactgttgttta
cggctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83731711_83732539
seq2: B6Ng01-008I03.b_46_874 (reverse)

seq1  CTGTAACTGACTTTAGGATATTGTACATTTTTCTATTAGCAACACAGAGA  50
      |||||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  CTGTAACTGACTTAGGGATATTGTACATTTTT-TATTAGCAACACAGAGA  49

seq1  GGTGGGGAGGGAGGGAGGAAGAAAGAGAGGAAGAAG-AAAAGGAAGAGGA  99
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  GGTGGGGAGGGAGGGAGGAAG-AAGAGAGGAAGAAGAAAAAGGAAGAGGA  98

seq1  AGAGGGAGAGGCACACCATTGGTGGGTGTAGCCTGGCTGGCTGGCGCAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGGCACACCATTGGTGGGTGTAGCCTGGCTGGCTGGCGCAGG  148

seq1  CATAGAGCACTCCTCTTGAGGAAGCCTCCTCAGTCAGGCTGGCAGAGTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGCACTCCTCTTGAGGAAGCCTCCTCAGTCAGGCTGGCAGAGTTG  198

seq1  TTCCCCTTCATTCTCCTTTATTCAAGCAGCTCCAGACATTGCCCTGACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCATTCTCCTTTATTCAAGCAGCTCCAGACATTGCCCTGACAG  248

seq1  GAAGGAACTCAAGGCAAG-AAGAAAAGGGTTGGACCCTTTCTCATGAGGA  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAGGAACTCAAGGCAAGAAAGAAAAGGGTTGGACCCTTTCTCATGAGGA  298

seq1  GAAAGAAGAGGGGGTGTTGAGCGGAATGGAGGATGGGGACCCTGCTCGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGGGGGTGTTGAGCGGAATGGAGGATGGGGACCCTGCTCGTC  348

seq1  TGCCTTCTAGTGCTGCCCAGAGTCACAGGACAGACTGCAGACAACGTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTAGTGCTGCCCAGAGTCACAGGACAGACTGCAGACAACGTGAG  398

seq1  GCCTGTGAGGACATCCTGCCCTGTCCTAAGTACGTGGGCCAGTATCGACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGGACATCCTGCCCTGTCCTAAGTACGTGGGCCAGTATCGACC  448

seq1  CACTGGGGCTGTGCAGAAAAGCTCCATGCTGTGGATCCCGCATGTTCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGCTGTGCAGAAAAGCTCCATGCTGTGGATCCCGCATGTTCCAG  498

seq1  GACTGCTTGGTGTTCTCGACCCCTCCTGACCAGCACACATCACCCTCTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTGGTGTTCTCGACCCCTCCTGACCAGCACACATCACCCTCTTA  548

seq1  CAATGATGGTATTCTCGTAAACCCATTCTACAGCAAAAGAAGCTGAAGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGTATTCTCGTAAACCCATTCTACAGCAAAAGAAGCTGAAGCA  598

seq1  CAGAGAAAGTGGGTATGGTGACCCACCGCAGTCTCCTAGGAAACCAGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGTGGGTATGGTGACCCACCGCAGTCTCCTAGGAAACCAGACT  648

seq1  CTCAGTGCTAAAACTATGAAAGTCATCAGCAAACTGGACAAGGTGGCTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTAAAACTATGAAAGTCATCAGCAAACTGGACAAGGTGGCTAC  698

seq1  CCTAGCCCCTAGTCTTCCTCCCACTGTCCTCATCTTCTTCTTTCTTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCCCTAGTCTTCCTCCCACTGTCCTCATCTTCTTCTTTCTTTTTT  748

seq1  TATTTTTATGTTGTTTCTTTGACATGCTCTTGTACCCCAGGCTGGCCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATGTTGTTTCTTTGACATGCTCTTGTACCCCAGGCTGGCCTCA  798

seq1  AATTCACTATATAACTGTTTGTGGTGAATTC  829
      |||||||||||||||||||||||||||||||
seq2  AATTCACTATATAACTGTTTGTGGTGAATTC  829

seq1: chr6_83558021_83559149
seq2: B6Ng01-008I03.g_69_1177

seq1  GAATTCATAATTAATCAGGATACATTGTATGAAAAGTGTAAAAATGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTAATCAGGATACATTGTATGAAAAGTGTAAAAATGTTTT  50

seq1  AAAAATTTAGAGAAAAAATAATGAAATAAAACCTTCTAGAAAGCATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAGAGAAAAAATAATGAAATAAAACCTTCTAGAAAGCATTTGG  100

seq1  TGCTTATGATGGTTTGTATATGCTTGGCCCAGGGAGTGGCACTATTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGATGGTTTGTATATGCTTGGCCCAGGGAGTGGCACTATTTGGA  150

seq1  GGTGTGACCTTAAGTAGGTATGTCACTGTGGGCATGGGCTTTAAGACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACCTTAAGTAGGTATGTCACTGTGGGCATGGGCTTTAAGACCCT  200

seq1  CATCCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAG  250

seq1  ATGTAGAACTCTCAGCTCCTCCTACACCCTTCCTGCCTGGATGCTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAACTCTCAGCTCCTCCTACACCCTTCCTGCCTGGATGCTGCCAT  300

seq1  ACTTCTGCCTTGATGATAATGGACTGATCTGCTGAACCTGTAAGCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCCTTGATGATAATGGACTGATCTGCTGAACCTGTAAGCCAGCC  350

seq1  CCATTAAATGTTGTCCTTGTAAGAGTTGCCTTGGACACTGAGCAGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAATGTTGTCCTTGTAAGAGTTGCCTTGGACACTGAGCAGTGGTG  400

seq1  GCACACACCTTTAATCCCAGCACACTTGGGAGGCAGAAGCAGGCGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCTTTAATCCCAGCACACTTGGGAGGCAGAAGCAGGCGGATTT  450

seq1  CTGAGTTCGAGGACAGCCTTGTCTACAGAGTGAGTTCCAGGACAGCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGACAGCCTTGTCTACAGAGTGAGTTCCAGGACAGCCTGT  500

seq1  GTCAGAAAAAAAAAAAGTTGCCTTGGTCATGCTGTCTGCTCACAGTCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAAAAAAAAAGTTGCCTTGGTCATGCTGTCTGCTCACAGTCGTA  550

seq1  AAACCCTAACTAAGACAGTTCATGAACTAGGATAACCATGTGATTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAACTAAGACAGTTCATGAACTAGGATAACCATGTGATTTCTAC  600

seq1  CCTTAAGTCCATTGGTTTACATATCACATTCATTGATGTGTGTTTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTCCATTGGTTTACATATCACATTCATTGATGTGTGTTTATATT  650

seq1  GACTCATCACTATATCTCTGGGAGGTTTTAATG-TTTTCTTGTATTCTGT  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACTCATCACTATATCTCTGGGAGGTTTTAATGTTTTTCTTGTATTCTGT  700

seq1  TTGCACATATTTCAAGAACAATTTTTGTTGTTGTTGTTGTTGTTCTCAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATATTTCAAGAACAATTTTTGTTGTTGTTGTTGTTGTTCTCAAG  750

seq1  ACAGGGTGTAATAACCTTGTCTGTCTTGGACCTGCTTTGTAGACTAGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGTAATAACCTTGTCTGTCTTGGACCTGCTTTGTAGACTAGACT  800

seq1  AGCCTTGAAAATATAGAGATCTGC-CTGCCCTTGGCTCCAGAATGCTGGG  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCCTTGAAAATATAGAGATCTGCTCTGCCCTTGGCTCCAGAATGCTGGG  850

seq1  ATTAAAGGCATGTGCTACCATGCCTGACCTAATGAACAATTTTTGTATCG  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTAAAGGCATGTGCTACCATGCCTGACCTAATGAACAA-TTTTGTATCG  899

seq1  TTGATAATCAATAAGTCTGGATTTTCTTTGGTCAATTTAGAGTAAGTTTG  948
      ||||| ||| ||||||||||||||||||||||||| |||||||||||| |
seq2  TTGATTATC-ATAAGTCTGGATTTTCTTTGGTCAA-TTAGAGTAAGTTGG  947

seq1  AGAAGTGAAAATAAACTCACCCTAAATTGGTGGCTTCTAACAGATTTGAA  998
      || ||||||||| ||||||||||||| |||| |||||||||||| ||| |
seq2  AG-AGTGAAAAT-AACTCACCCTAAA-TGGT-GCTTCTAACAGA-TTGGA  992

seq1  GTAAGAGACTTTTGTGCATCAGGTTTCTCCAAGATTGAAACATCCCATCC  1048
      ||| || |  ||||||  ||||  |||||| ||| |||||| ||||||||
seq2  GTATGA-ATCTTTGTGGCTCAG--TTCTCC-AGA-TGAAAC-TCCCATCC  1036

seq1  TTTGGGGAAGATGTTTGAACATAAACAATTTAACTAGCTTCTGAAAATTC  1098
      ||| ||||| |||  || || ||| ||  |||||||||||||||||||| 
seq2  TTT-GGGAAAATG--TGGACCTAAGCA--TTAACTAGCTTCTGAAAATT-  1080

seq1  CTGAAACTGACTG-TGTTTACAGCCCCTCTCT  1129
      ||||| ||||||| ||||||| |   ||||||
seq2  CTGAATCTGACTGTTGTTTACGG---CTCTCT  1109