BAC Information

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BAC

Clone NameB6Ng01-008I06
Chromosome6 (Build37)
Map Location 37,910,733 - 38,074,187
singlet/doubletdoublet
Overlap geneTrim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik
Upstream geneDgki, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102
Downstream geneLOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008I06.bB6Ng01-008I06.g
ACCDH844745DH844746
length853314
definitionDH844745|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I06, 5' end.DH844746|Mus musculus domesticus DNA, BAC clone: B6Ng01-008I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,073,326 - 38,074,187)(37,910,733 - 37,911,046)
sequence
gaattcttttgtccatgttaaaaagacttgaaaactgaaacgtcacggta
cagtgttaattcacgcctgtgtgtgtaacaggacactcagcaattatctt
aagaacacacagcagcattgacgtgtagaaagagaatagtaaatgccttt
gggaacacggttgagagccagccaggacgcaaggggagcaatgaatgtct
gtgtctgatatgctcctcccaggttggtgtcccactggacaggtcacaat
gcaggctgcctgctttgcctcctcctgtgtttccctgctccagggccact
tccagggattacatggaggatcaccgatgtcttttctcatgcccaccaga
tatcaagtactcatgacttgactcccaaatgcgccgttacagggctaagt
taaagccagactttaaagttctgtcacggtggtaaggaaagaaacaggag
gtgctagaggaaccaagagttctggtcattaactcagtcatgccgagcac
cagggcgctggttctgaaacggttaagagaaaggctctgggctttgctcc
catctctgcacagcgcactgtggagcagagaggagggagacaggagtagg
gttatcatggaagcttgctctgccaggctgctccaggatgccagcttgtc
tctgactcggttgaggtccatgctctgactttctgcacccctcgtgctag
cgattcgtgtactatacaaaccgcagatgaatgggccacctgtggcatca
agactgcacttgacaatcacggtttgctgatctcaaacggcacttaaagc
ctggtatggggtggtgattaggactgggcctgcccctccgtttgcagtta
cgt
tttcagaaactaaggtatgacttcattcttatttgtatttttcattagaa
atgtgaacgcctacttctgtttctttactgccatgaaatgagcctggctt
tccaagaccctgttcctctaactgtaagtattagtgtcacatgtacaggt
ttacatggagggataacagtaatgtcacatgtacaggtttacatggaggg
ataatttttaaattttatgagaacccaatttctttatcatttcaataatt
tcttgtatctaatccaaatctttttgtgggtggtcctttgggggagtgtg
tatagatatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38073326_38074187
seq2: B6Ng01-008I06.b_42_894 (reverse)

seq1  ACGTAACTGACAAACAGAAGGGCAGGCTCAGTCACTAAATCACACACCCA  50
      ||||||||| ||||| || |||||||| ||||| || ||||||   ||||
seq2  ACGTAACTG-CAAACGGAGGGGCAGGCCCAGTC-CT-AATCACCACCCCA  47

seq1  TACCAGGCTTTAAGTGCCCGTTTGAGATCAGCAAACCGTGATTGTCAAGT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TACCAGGCTTTAAGTG-CCGTTTGAGATCAGCAAACCGTGATTGTCAAG-  95

seq1  TGCAGTCTTGATGCCACAGGTGGCCCAATTCCTTCTGCGGTTTTGTATAG  150
      |||||||||||||||||||||||||||  | | ||||||| |||||||||
seq2  TGCAGTCTTGATGCCACAGGTGGCCCA--TTCATCTGCGG-TTTGTATAG  142

seq1  TAACACGAATCGCCTAGCACGA-GGGTGCAGAAAGTCAGAGCATGGACCT  199
      | |||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  T-ACACGAATCG-CTAGCACGAGGGGTGCAGAAAGTCAGAGCATGGACCT  190

seq1  CAACCGAGTCAGAGACAAGCTGGCATCCTGGAGCAGCCTGGCAGAGCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGAGTCAGAGACAAGCTGGCATCCTGGAGCAGCCTGGCAGAGCAAG  240

seq1  CTTCCCTGATAACCCTACTCCTGTCTCCCTCCTCTCTGCTCCACAGTGCG  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGATAACCCTACTCCTGTCTCCCTCCTCTCTGCTCCACAGTGCG  290

seq1  CTGTGCAGAGATGGGAGCAAAGCCCAGAGCCTTTCTCTTAACCGTTTCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAGATGGGAGCAAAGCCCAGAGCCTTTCTCTTAACCGTTTCAG  340

seq1  AACCAGCGCCCTGGTGCTCGGCATGACTGAGTTAATGACCAGAACTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCGCCCTGGTGCTCGGCATGACTGAGTTAATGACCAGAACTCTTG  390

seq1  GTTCCTCTAGCACCTCCTGTTTCTTTCCTTACCACCGTGACAGAACTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTAGCACCTCCTGTTTCTTTCCTTACCACCGTGACAGAACTTTA  440

seq1  AAGTCTGGCTTTAACTTAGCCCTGTAACGGCGCATTTGGGAGTCAAGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCTTTAACTTAGCCCTGTAACGGCGCATTTGGGAGTCAAGTCA  490

seq1  TGAGTACTTGATATCTGGTGGGCATGAGAAAAGACATCGGTGATCCTCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTTGATATCTGGTGGGCATGAGAAAAGACATCGGTGATCCTCCA  540

seq1  TGTAATCCCTGGAAGTGGCCCTGGAGCAGGGAAACACAGGAGGAGGCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCCTGGAAGTGGCCCTGGAGCAGGGAAACACAGGAGGAGGCAAA  590

seq1  GCAGGCAGCCTGCATTGTGACCTGTCCAGTGGGACACCAACCTGGGAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCCTGCATTGTGACCTGTCCAGTGGGACACCAACCTGGGAGGA  640

seq1  GCATATCAGACACAGACATTCATTGCTCCCCTTGCGTCCTGGCTGGCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAGACACAGACATTCATTGCTCCCCTTGCGTCCTGGCTGGCTCT  690

seq1  CAACCGTGTTCCCAAAGGCATTTACTATTCTCTTTCTACACGTCAATGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGTGTTCCCAAAGGCATTTACTATTCTCTTTCTACACGTCAATGCT  740

seq1  GCTGTGTGTTCTTAAGATAATTGCTGAGTGTCCTGTTACACACACAGGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTTCTTAAGATAATTGCTGAGTGTCCTGTTACACACACAGGCG  790

seq1  TGAATTAACACTGTACCGTGACGTTTCAGTTTTCAAGTCTTTTTAACATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAACACTGTACCGTGACGTTTCAGTTTTCAAGTCTTTTTAACATG  840

seq1  GACAAAAGAATTC  862
      |||||||||||||
seq2  GACAAAAGAATTC  853

seq1: chr6_37910733_37911046
seq2: B6Ng01-008I06.g_74_387

seq1  TTTCAGAAACTAAGGTATGACTTCATTCTTATTTGTATTTTTCATTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAACTAAGGTATGACTTCATTCTTATTTGTATTTTTCATTAGAA  50

seq1  ATGTGAACGCCTACTTCTGTTTCTTTACTGCCATGAAATGAGCCTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACGCCTACTTCTGTTTCTTTACTGCCATGAAATGAGCCTGGCTT  100

seq1  TCCAAGACCCTGTTCCTCTAACTGTAAGTATTAGTGTCACATGTACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACCCTGTTCCTCTAACTGTAAGTATTAGTGTCACATGTACAGGT  150

seq1  TTACATGGAGGGATAACAGTAATGTCACATGTACAGGTTTACATGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGAGGGATAACAGTAATGTCACATGTACAGGTTTACATGGAGGG  200

seq1  ATAATTTTTAAATTTTATGAGAACCCAATTTCTTTATCATTTCAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTAAATTTTATGAGAACCCAATTTCTTTATCATTTCAATAATT  250

seq1  TCTTGTATCTAATCCAAATCTTTTTGTGGGTGGTCCTTTGGGGGAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATCTAATCCAAATCTTTTTGTGGGTGGTCCTTTGGGGGAGTGTG  300

seq1  TATAGATATGTGTG  314
      ||||||||||||||
seq2  TATAGATATGTGTG  314