BAC Information

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BAC

Clone NameB6Ng01-009A20
Chromosome6 (Build37)
Map Location 27,914,749 - 28,084,510
singlet/doubletdoublet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A20.bB6Ng01-009A20.g
ACCDH845102DH845103
length1,128559
definitionDH845102|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A20, 5' end.DH845103|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,914,749 - 27,915,896)(28,083,946 - 28,084,510)
sequence
gaattctatatttgttgaattttttaaattgatttagatataaaaaaaaa
ggattaaaataccttctaccaaaaaataaaggattcagccatgtttataa
caacgaaacaaaatgtctaccttgctcattccttttgactttgggtcctc
tggatgccattcaaatagctagtaggcaaaactgccctatgactaagaaa
tccctttagggaaactctttggctacaatgtgatattagctaatttcagt
gattaaacttaataaaatggtagtggaagtaaaaaaagtaaataggtgtc
aatgtcctacttcaggaactactaggtagtgagatgtatctccactgatg
accataatgcccctggttaaattatttggcccctagtacacaggtcacag
agcctttcagggtagagaaaaacatctcaacacaagccttttttattttt
aaaactgctttttttgtagtcatttaggtagaggccaagactatttttaa
caaatattatgattcatagttacatttagatcctagaatttttagagaaa
ttttggtctctgtaacttaatttaacctatgttgatagagtttttatcat
gccccaggcactgctgagtaagaccagattgctcacattcctgagaaggt
cacagtctatgtggaaggcagagatgtcaacagactgccgttgcagtgtg
tacagccgacatctgtgcatctctcaggccaggcagtctttcctctgcat
tctagatgagcatcccaatttagctttgaagagtgacaccaccctgtggt
gggactatgtgtgcttcaagtgaggttaacccttcttttccaagtaccca
agataggcatataaccaaatgaataggacattcttcatgctagagtgatt
acctagcacgaagtcacctgacacacagtagagcatgttggaatttctgt
ggaaatgcaaggaaggaatatactcttcctgtaagttttacaatgagctt
atcctcaccccccccacccccctgagagaagagaggagagagaagagaga
ggaagggagagatgcttccctggaagctcagaaaatatcttacctggaga
taaggacatcttttgaatgcctttcttt
ccaagctttggagatgtgattcccccaaaagtttagacggtgaatgggag
attgaagggtgacgggagtgggcaggcgctcctaggatgctctaacaggg
cgagcggcagcaggattttaaatcactctgcctgggattgcctggcctga
gtgacctcctggacctgccctggcggaatctgaacttgctcggccaagaa
gcccaggtaccttggttatgcgaatctgaagggagggatttccgaagtta
gcaccttcgggaatgagttggggtaacccccgctttcctgaactctggct
agatggatgtctaacaaggatctggggggatgattcggggggagtgtcgc
aggaaagcctggtggtaataaggggtcctcgaaaccccgcatcctggagg
tgcagcacacactgccttgagtttgcggtctccgagttagctccgctagg
ttgggatttccttgtgcccccccccccaccccggcagttcccccgccccc
actccccaggtctgggaaaaacgctggagttccgagtcctgttgggggtg
gggggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_27914749_27915896
seq2: B6Ng01-009A20.b_44_1171

seq1  GAATTCTATATTTGTTGAATTTTTTAAATTGATTTAGATATAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTTGTTGAATTTTTTAAATTGATTTAGATATAAAAAAAAA  50

seq1  GGATTAAAATACCTTCTACCAAAAAATAAAGGATTCAGCCATGTTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAATACCTTCTACCAAAAAATAAAGGATTCAGCCATGTTTATAA  100

seq1  CAACGAAACAAAATGTCTACCTTGCTCATTCCTTTTGACTTTGGGTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAAACAAAATGTCTACCTTGCTCATTCCTTTTGACTTTGGGTCCTC  150

seq1  TGGATGCCATTCAAATAGCTAGTAGGCAAAACTGCCCTATGACTAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCCATTCAAATAGCTAGTAGGCAAAACTGCCCTATGACTAAGAAA  200

seq1  TCCCTTTAGGGAAACTCTTTGGCTACAATGTGATATTAGCTAATTTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAGGGAAACTCTTTGGCTACAATGTGATATTAGCTAATTTCAGT  250

seq1  GATTAAACTTAATAAAATGGTAGTGGAAGTAAAAAAAGTAAATAGGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAACTTAATAAAATGGTAGTGGAAGTAAAAAAAGTAAATAGGTGTC  300

seq1  AATGTCCTACTTCAGGAACTACTAGGTAGTGAGATGTATCTCCACTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTACTTCAGGAACTACTAGGTAGTGAGATGTATCTCCACTGATG  350

seq1  ACCATAATGCCCCTGGTTAAATTATTTGGCCCCTAGTACACAGGTCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATGCCCCTGGTTAAATTATTTGGCCCCTAGTACACAGGTCACAG  400

seq1  AGCCTTTCAGGGTAGAGAAAAACATCTCAACACAAGCCTTTTTTATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCAGGGTAGAGAAAAACATCTCAACACAAGCCTTTTTTATTTTT  450

seq1  AAAACTGCTTTTTTTGTAGTCATTTAGGTAGAGGCCAAGACTATTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCTTTTTTTGTAGTCATTTAGGTAGAGGCCAAGACTATTTTTAA  500

seq1  CAAATATTATGATTCATAGTTACATTTAGATCCTAGAATTTTTAGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTATGATTCATAGTTACATTTAGATCCTAGAATTTTTAGAGAAA  550

seq1  TTTTGGTCTCTGTAACTTAATTTAACCTATGTTGATAGAGTTTTTATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCTCTGTAACTTAATTTAACCTATGTTGATAGAGTTTTTATCAT  600

seq1  GCCCCAGGCACTGCTGAGTAAGACCAGATTGCTCACATTCCTGAGAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCACTGCTGAGTAAGACCAGATTGCTCACATTCCTGAGAAGGT  650

seq1  CACAGTCTATGTGGAAGGCAGAGATGTCAACAGACTGCCGTTGCAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTATGTGGAAGGCAGAGATGTCAACAGACTGCCGTTGCAGTGTG  700

seq1  TACAGCCGACATCTGTGCATCTCTCAGGCCAGGCAGTCTTTCCTCTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCGACATCTGTGCATCTCTCAGGCCAGGCAGTCTTTCCTCTGCAT  750

seq1  TCTAGATGAGCATCCCAATTTAGCTTTGAAGAGTGACACCACCCTGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGAGCATCCCAATTTAGCTTTGAAGAGTGACACCACCCTGTGGT  800

seq1  GGGACTATGTGTGCTTCAAGTGAGGTTAACCCTTCTTTTCCAAGTACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTATGTGTGCTTCAAGTGAGGTTAACCCTTCTTTTCCAAGTACCCA  850

seq1  AGATAGGCATATAACCAAATGAATAGGACATTCTTCATGCTAGAGTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCATATAACCAAATGAATAGGACATTCTTCATGCTAGAGTGATT  900

seq1  ACCTAGCACGAAGTCACCTGACACACAGTAGGAGCATGTTGGAATTTCTG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCTAGCACGAAGTCACCTGACACACAGTA-GAGCATGTTGGAATTTCTG  949

seq1  TGGAAATGCAAAGGAAGGAATATACTCTTCCTGTTAAGGTTTTAACAATG  1000
      ||||||||| ||||||||||||||||||||||| ||||  ||| ||||||
seq2  TGGAAATGC-AAGGAAGGAATATACTCTTCCTG-TAAG--TTTTACAATG  995

seq1  AGCTTAATCACACACACACACACACACACACACACACAGAGAGAGAGAGA  1050
      ||||||  | |||         | | | ||| | | | |||||| |||||
seq2  AGCTTATCCTCAC---------CCCCCCCAC-CCCCCTGAGAGA-AGAGA  1034

seq1  GAGAGAGAAAGAGAGAGAGAGAGAGAGAGATGCATACACCTGGAAGCCCA  1100
      | |||||| | ||||||||  || ||||||||| |   ||||||||| ||
seq2  G-GAGAGAGA-AGAGAGAGGAAGGGAGAGATGCTT--CCCTGGAAGCTCA  1080

seq1  GAAAATAACCTAACTTGAGATAAGGACATCTGTAGAATGCCTTTCTTT  1148
      ||||||| | || || ||||||||||||||| | ||||||||||||||
seq2  GAAAATATCTTACCTGGAGATAAGGACATCTTTTGAATGCCTTTCTTT  1128

seq1: chr6_28083946_28084510
seq2: B6Ng01-009A20.g_70_634 (reverse)

seq1  TATTCCCCCCACCCCCAACAGGACTCGGAACTCCAGCGTTTTTCCCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCCCACCCCCAACAGGACTCGGAACTCCAGCGTTTTTCCCAGAC  50

seq1  CTGGGGAGTGGGGGCGGGGGAACTGCCGGGGTGGGGGGGGGGGCACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGTGGGGGCGGGGGAACTGCCGGGGTGGGGGGGGGGGCACAAGG  100

seq1  AAATCCCAACCTAGCGGAGCTAACTCGGAGACCGCAAACTCAAGGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAACCTAGCGGAGCTAACTCGGAGACCGCAAACTCAAGGCAGTG  150

seq1  TGTGCTGCACCTCCAGGATGCGGGGTTTCGAGGACCCCTTATTACCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCACCTCCAGGATGCGGGGTTTCGAGGACCCCTTATTACCACCA  200

seq1  GGCTTTCCTGCGACACTCCCCCCGAATCATCCCCCCAGATCCTTGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCTGCGACACTCCCCCCGAATCATCCCCCCAGATCCTTGTTAGA  250

seq1  CATCCATCTAGCCAGAGTTCAGGAAAGCGGGGGTTACCCCAACTCATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCTAGCCAGAGTTCAGGAAAGCGGGGGTTACCCCAACTCATTCC  300

seq1  CGAAGGTGCTAACTTCGGAAATCCCTCCCTTCAGATTCGCATAACCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTGCTAACTTCGGAAATCCCTCCCTTCAGATTCGCATAACCAAGG  350

seq1  TACCTGGGCTTCTTGGCCGAGCAAGTTCAGATTCCGCCAGGGCAGGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGGCTTCTTGGCCGAGCAAGTTCAGATTCCGCCAGGGCAGGTCCA  400

seq1  GGAGGTCACTCAGGCCAGGCAATCCCAGGCAGAGTGATTTAAAATCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCACTCAGGCCAGGCAATCCCAGGCAGAGTGATTTAAAATCCTGC  450

seq1  TGCCGCTCGCCCTGTTAGAGCATCCTAGGAGCGCCTGCCCACTCCCGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCTCGCCCTGTTAGAGCATCCTAGGAGCGCCTGCCCACTCCCGTCA  500

seq1  CCCTTCAATCTCCCATTCACCGTCTAAACTTTTGGGGGAATCACATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAATCTCCCATTCACCGTCTAAACTTTTGGGGGAATCACATCTCC  550

seq1  AAAGCTTGGGAATTC  565
      |||||||||||||||
seq2  AAAGCTTGGGAATTC  565