BAC Information

Click to search

BAC

Clone NameB6Ng01-009H19
Chromosome6 (Build37)
Map Location 78,690,139 - 78,835,280
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H19.bB6Ng01-009H19.g
ACCDH845413DH845414
length670773
definitionDH845413|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H19, 5' end.DH845414|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,834,610 - 78,835,280)(78,690,139 - 78,690,911)
sequence
gaattcaactttgcagattcacaattcaaacactcctttaattatacagg
tttatttgaatggaatagagcaaatgctctctaaccttaaaatggtgctg
aaattaaacatggtatttagcagaatcactgaaggagctcagagaagaga
ggttcatttgaaaacctgaaggaaactctgacccatctctccaaagtctt
cccctggcctccctggtctcccaggtcttctgcttcagtgattcaaggaa
caaagagttctaactgttgcaaatgtcttcctttattgcaaagtaacctc
agagtaatttcatcctttaattttattccttccatttggagcacagtaga
ataaatttattatccctttcacatatttgatgacaggtactctattattc
ccctgtctaacctgctctgagatagtaggatatactgcaggatatatata
tatatatatatatatatatatatatatatatatatatagtaggatatatt
gctatttatatatatcattttgggtgatctctccagagaaatcaatgtcc
ttcttaaaatggacctgtgagatgtacatgacatatctctgaggctcttt
ccattcgcaatctagttataaatgtaataaactgcttcttctgaagaatg
tcaaaattcctacaaagggt
gaattcatgactgcacacaaatacggacagcagctctaaagaccttgaag
tgcctggaaactcatatcagactacttagtctccaaagcagactcctttt
ctgttgtttgccttatacactgggtttatcagagctactggatgttttaa
gtcctcattaaaactagggccactcactgggcttttctgatgtgctatct
tgttccagcttccattttatcagagctgaagacatctaaggtgttttaaa
gttccttaggataattggccaaatccttctgtgtttccatcagtttgcat
aattaggttggctccttttccccctctaagcctagctggaaaaatgacaa
aggatgagctgtttgtatatcattaatctgcatcctcgttaactaaagta
agatcttcagtcaacaggaagatgggctaatgatgactcctggctgtttg
attgtttacagttccttttgtcatttttcaccctctgcatccctttgatt
gagccaattgtgaatataggcaatcaataaaactccaggtgctatcattt
ggcacaaatcttgcatataattatgtgagactgtagcttggtccatcaac
atagaatttagaaaaaaaataaaaatgaaaataagaacaaaaccataatg
tttggaaattttcaagagaatataatacagttattttgtggccacgtggg
tttttttgttgttgttgttgctgtttttgttttgttttgttttgttttaa
ttaggagggggagattatttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78834610_78835280
seq2: B6Ng01-009H19.b_46_715 (reverse)

seq1  ACCCTTTGTAGGAGTTTTGACAGTTCTTCAGAAGAAGCAGTTTATTACAT  50
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  ACCCTTTGTAGGAATTTTGACA-TTCTTCAGAAGAAGCAGTTTATTACAT  49

seq1  TTATAAGTAGATTGCGAATGGAAAGAGCCTCAGAGATATGTCATGTACAT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTAGATTGCGAATGGAAAGAGCCTCAGAGATATGTCATGTACAT  99

seq1  ATCCCAGGTCCCTTTTAAGAAGGACATTGATTGCTCTGGAGAGATCAACC  150
       || ||||||| |||||||||||||||||||| |||||||||||||| ||
seq2  CTCACAGGTCCATTTTAAGAAGGACATTGATTTCTCTGGAGAGATCACCC  149

seq1  AAAATGATGTCTGTGAGCTGCAATATATCCTACTATATATATATATATAT  200
      |||||||| | | | |   |||||||||||||||||||||||||||||||
seq2  AAAATGATATATATAAATAGCAATATATCCTACTATATATATATATATAT  199

seq1  ATATATATATATATATATATATATATATATCCTGCAGTATATCCTACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATCCTGCAGTATATCCTACTAT  249

seq1  CTCAGAGCAGGTTAGACAGGGGAATAATAGAGTACCTGTCATCAAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCAGGTTAGACAGGGGAATAATAGAGTACCTGTCATCAAATATG  299

seq1  TGAAAGGGATAATAAATTTATTCTACTGTGCTCCAAATGGAAGGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGATAATAAATTTATTCTACTGTGCTCCAAATGGAAGGAATAAA  349

seq1  ATTAAAGGATGAAATTACTCTGAGGTTACTTTGCAATAAAGGAAGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGATGAAATTACTCTGAGGTTACTTTGCAATAAAGGAAGACATT  399

seq1  TGCAACAGTTAGAACTCTTTGTTCCTTGAATCACTGAAGCAGAAGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGTTAGAACTCTTTGTTCCTTGAATCACTGAAGCAGAAGACCTG  449

seq1  GGAGACCAGGGAGGCCAGGGGAAGACTTTGGAGAGATGGGTCAGAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCAGGGAGGCCAGGGGAAGACTTTGGAGAGATGGGTCAGAGTTTC  499

seq1  CTTCAGGTTTTCAAATGAACCTCTCTTCTCTGAGCTCCTTCAGTGATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTTTTCAAATGAACCTCTCTTCTCTGAGCTCCTTCAGTGATTCT  549

seq1  GCTAAATACCATGTTTAATTTCAGCACCATTTTAAGGTTAGAGAGCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATACCATGTTTAATTTCAGCACCATTTTAAGGTTAGAGAGCATTT  599

seq1  GCTCTATTCCATTCAAATAAACCTGTATAATTAAAGGAGTGTTTGAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTCCATTCAAATAAACCTGTATAATTAAAGGAGTGTTTGAATTG  649

seq1  TGAATCTGCAAAGTTGAATTC  671
      |||||||||||||||||||||
seq2  TGAATCTGCAAAGTTGAATTC  670

seq1: chr6_78690139_78690911
seq2: B6Ng01-009H19.g_70_842

seq1  GAATTCATGACTGCACACAAATACGGACAGCAGCTCTAAAGACCTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACTGCACACAAATACGGACAGCAGCTCTAAAGACCTTGAAG  50

seq1  TGCCTGGAAACTCATATCAGACTACTTAGTCTCCAAAGCAGACTCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAACTCATATCAGACTACTTAGTCTCCAAAGCAGACTCCTTTT  100

seq1  CTGTTGTTTGCCTTATACACTGGGTTTATCAGAGCTACTGGATGTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTTGCCTTATACACTGGGTTTATCAGAGCTACTGGATGTTTTAA  150

seq1  GTCCTCATTAAAACTAGGGCCACTCACTGGGCTTTTCTGATGTGCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATTAAAACTAGGGCCACTCACTGGGCTTTTCTGATGTGCTATCT  200

seq1  TGTTCCAGCTTCCATTTTATCAGAGCTGAAGACATCTAAGGTGTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGCTTCCATTTTATCAGAGCTGAAGACATCTAAGGTGTTTTAAA  250

seq1  GTTCCTTAGGATAATTGGCCAAATCCTTCTGTGTTTCCATCAGTTTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAGGATAATTGGCCAAATCCTTCTGTGTTTCCATCAGTTTGCAT  300

seq1  AATTAGGTTGGCTCCTTTTCCCCCTCTAAGCCTAGCTGGAAAAATGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTTGGCTCCTTTTCCCCCTCTAAGCCTAGCTGGAAAAATGACAA  350

seq1  AGGATGAGCTGTTTGTATATCATTAATCTGCATCCTCGTTAACTAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAGCTGTTTGTATATCATTAATCTGCATCCTCGTTAACTAAAGTA  400

seq1  AGATCTTCAGTCAACAGGAAGATGGGCTAATGATGACTCCTGGCTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTCAGTCAACAGGAAGATGGGCTAATGATGACTCCTGGCTGTTTG  450

seq1  ATTGTTTACAGTTCCTTTTGTCATTTTTCACCCTCTGCATCCCTTTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTACAGTTCCTTTTGTCATTTTTCACCCTCTGCATCCCTTTGATT  500

seq1  GAGCCAATTGTGAATATAGGCAATCAATAAAACTCCAGGTGCTATCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATTGTGAATATAGGCAATCAATAAAACTCCAGGTGCTATCATTT  550

seq1  GGCACAAATCTTGCATATAATTATGTGAGACTGTAGCTTGGTCCATCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAATCTTGCATATAATTATGTGAGACTGTAGCTTGGTCCATCAAC  600

seq1  ATAGAATTTAGAAAAAAAATAAAAATGAAAATAAGAACAAAACCATAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTAGAAAAAAAATAAAAATGAAAATAAGAACAAAACCATAATG  650

seq1  TTTGGAAATTTTCAAGAGAATATAATACAGTTATTTTGTGGCCACGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATTTTCAAGAGAATATAATACAGTTATTTTGTGGCCACGTGGG  700

seq1  TTTTTTTGTTGTTGTTGTTGCTGTTTTTGTTTTGTTTTGTTTTGTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTGTTGTTGTTGCTGTTTTTGTTTTGTTTTGTTTTGTTTTAA  750

seq1  TTAGGAGGGGGAGATTATTTTGG  773
      ||||||||||||||||||||| |
seq2  TTAGGAGGGGGAGATTATTTTTG  773