BAC Information

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BAC

Clone NameB6Ng01-009I23
Chromosome6 (Build37)
Map Location 50,172,895 - 50,341,758
singlet/doubletdoublet
Overlap geneDfna5h, LOC100041681, Osbpl3
Upstream geneTra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6
Downstream geneCycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877, EG625167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I23.bB6Ng01-009I23.g
ACCDH845469DH845470
length1,0401,016
definitionDH845469|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I23, 5' end.DH845470|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,172,895 - 50,174,100)(50,340,742 - 50,341,758)
sequence
gaattctgtagtggagagaaaagcccacgccaggcactgatcacctcaga
ctcatcgttacctacctcacactgtgtcaggagacacacaaaagggcttt
tgcttctttgcatcagtttttgagactgagtctagtggtttgaatgagaa
atatctcccatagactcagcttttgagtgtttagtcgccagtttagtggc
attttttggaaggtacagtcctgctagaggaagtaagtcactgcgggagg
gctctgagttacagcctttgagctactgtcaccctgtgtgatctcagctt
cctgctcccgctcacatgcctgccacttgctgacgtgcctctgcccctcc
atggccgactcttctctcccagaaaccataagccaaattgaactcttcct
tgagttgcctttggtcacagtactttgtcacagcaacagaaaaataacta
atagagtcttactatgtagcccaggctcatctctaaccccagatcctcct
gcctcagcctcacacgtgctgggattacagacacatgccaccatgtctgc
tcacttgagggctcttacactaggtctgatcaggcatagagtggctgaca
gacttgtcctgcactacagcaagcttaggagggcctttggggtccctctg
tgtccttgtcttctgagatgaggagtcaccttttgttgagcacagggaaa
gacacctctccctgggggtgtgttactcccttcagaggtggaccaggaaa
tcctagatttttatcttccgttctctcaaatccctgtaaaatattttggg
tttcacgtgctaatgtcattatggtaaaaaagaagacccagagaccgatt
tcctgactgaagcaagagctcaacagccaccttacagcaggatttctctg
ggtcaggagacactctagacaagaggggcagtggggctcagggctcatgg
atggcaggtgctttctcagaggattaactttgggagacagtgacagtggg
gtaggggatgagagagcaagtttgggacacttctggcaag
gaattcttgcataagggtcagtcttttttcatggagaagttgatttctcc
gaggtcattgtttctgtcttggggaatctttttgttgttgttgtttttcg
agacagggtgtctctgtatagccctggctgtcctggaactcactctgtag
accaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtg
ctgggattaaaggcgtgcgccaccacgcccggctctgtcttggggaatct
tgaacatgccctgtgatgtagtgtcaatttgtcaacacctgtctggaact
gagtatataagttacttctatcattcctgtcatgaaatgcttgacaaatg
tcacttaaagaaagttttattttggttttattttggctcatggtttgagg
ggacagtccatcgagacagaggaggaatgatggcaggagcacgaggcagc
tcatgtcaggcatcacatctccagtcaggaagcagagagagatacgtgat
agcacccctcttccctttcctttttatttagtctgggataaagaatggcg
ctcgctacccatgagggcaggtcttcccagctcagctaaatctctctgga
aacacccagcttggcatgtccatgggtttgtctctgaaagtggctttaaa
tcctgctaagctgacactcaggattgattaaatatcacaccaagcttgac
ctatagcaagtgcccattcagtgcatgtttggtaagtgaatcccaggtgt
tgatcatactgtcttatctacttgcagaaatagaatgctttgcacctgtt
ctaactaacgcctctatcatttgtatgaatatttaagtataaaggatctt
tttacacaagatttggtaagataattttccatatgacttaacatgtttag
ctttctcaagtggcataactttctgcaaatgatatatttatgacatccga
tacttccttttaagccaatttgagacactagaaggattggttctcagtaa
taaactctaaaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50172895_50174100
seq2: B6Ng01-009I23.b_47_1086

seq1  GAATTCTGTAGTGGAGAGAAAAGCCCAAGCCAGGCACTGATCACCTCAGA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCTGTAGTGGAGAGAAAAGCCCACGCCAGGCACTGATCACCTCAGA  50

seq1  CTCATCGTTACCTACCTCACACTGTGTCAGGAGACACACAAAAGGGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCGTTACCTACCTCACACTGTGTCAGGAGACACACAAAAGGGCTTT  100

seq1  TGCTTCTTTGCATCAGTTTTTGAGACTGAGTCTAGTGGTTTGAATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTGCATCAGTTTTTGAGACTGAGTCTAGTGGTTTGAATGAGAA  150

seq1  ATATCTCCCATAGACTCAGCTTTTGAGTGTTTAGTCGCCAGTTTAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCCATAGACTCAGCTTTTGAGTGTTTAGTCGCCAGTTTAGTGGC  200

seq1  ATTTTTTGGAAGGTACAGTCCTGCTAGAGGAAGTAAGTCACTGCGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGGAAGGTACAGTCCTGCTAGAGGAAGTAAGTCACTGCGGGAGG  250

seq1  GCTCTGAGTTACAGCCTTTGAGCTACTGTCACCCTGTGTGATCTCAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGTTACAGCCTTTGAGCTACTGTCACCCTGTGTGATCTCAGCTT  300

seq1  CCTGCTCCCGCTCACATGCCTGCCACTTGCTGACGTGCCTCTGCCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCGCTCACATGCCTGCCACTTGCTGACGTGCCTCTGCCCCTCC  350

seq1  ATGGCCGACTCTTCTCTCCCAGAAACCATAAGCCAAATTGAACTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGACTCTTCTCTCCCAGAAACCATAAGCCAAATTGAACTCTTCCT  400

seq1  TGAGTTGCCTTTGGTCACAGTACTTTGTCACAGCAACAGAAAAATAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGCCTTTGGTCACAGTACTTTGTCACAGCAACAGAAAAATAACTA  450

seq1  ATAGAGTCTTACTATGTAGCCCAGGCTCATCTCTAACCCCAGATCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTCTTACTATGTAGCCCAGGCTCATCTCTAACCCCAGATCCTCCT  500

seq1  GCCTCAGCCTCACACGTGCTGGGATTACAGACACATGCCACCATGTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTCACACGTGCTGGGATTACAGACACATGCCACCATGTCTGC  550

seq1  TCACTTGAGGGCTCTTACACTAGGTCTGATCAGGCATAGAGTGGCTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAGGGCTCTTACACTAGGTCTGATCAGGCATAGAGTGGCTGACA  600

seq1  GACTTGTCCTGCACTACAGCAAGCTTAGGAGGGCCTTTGGGGTCCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCCTGCACTACAGCAAGCTTAGGAGGGCCTTTGGGGTCCCTCTG  650

seq1  TGTCCTTGTCTTCTGAGATGAGGAGTCACCTTTTGTTGAGCACA-GGAAA  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTCCTTGTCTTCTGAGATGAGGAGTCACCTTTTGTTGAGCACAGGGAAA  700

seq1  GACACCTCTCCCTGGGGGTGTGTTAC-CCCTTCAGAGGTGGACCAGGAAA  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACACCTCTCCCTGGGGGTGTGTTACTCCCTTCAGAGGTGGACCAGGAAA  750

seq1  TCCTAGATTTTTATCTTCCGTTCCCTCAAATCCCTGTAAAATATTTTGGG  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTAGATTTTTATCTTCCGTTCTCTCAAATCCCTGTAAAATATTTTGGG  800

seq1  TTTCACGTGCTAATGTCATTATGGTAAAAAAGAAGACCCAGAGACCGA-T  847
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCACGTGCTAATGTCATTATGGTAAAAAAGAAGACCCAGAGACCGATT  850

seq1  TCCTGACTGAAGCAAGAGCTCAAACAGCCACCTTACAGCAGGATTTCTCT  897
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTGACTGAAGCAAGAGCTC-AACAGCCACCTTACAGCAGGATTTCTCT  899

seq1  GGGCCAGGAGACACCCTAGACAAGAGGGGCAGTGGGGCCCAGGGCTCAGG  947
      ||| |||||||||| ||||||||||||||||||||||| ||||||||| |
seq2  GGGTCAGGAGACACTCTAGACAAGAGGGGCAGTGGGGCTCAGGGCTCATG  949

seq1  GATGGCAGGGTGTTTCCCAGAGGATTAACTTTGGGAGACAGTGACAGTGG  997
      |||||||||   |||| |||||||||||||||||||||||||||||||||
seq2  GATGGCAGGTGCTTTCTCAGAGGATTAACTTTGGGAGACAGTGACAGTGG  999

seq1  GGTAGGTGATGAGAGAGCAAGTTAGGGACACTTCT-GCAAGGCAAAGCTT  1046
      |||||| |||||||||||||||| ||||||||||| |||||         
seq2  GGTAGGGGATGAGAGAGCAAGTTTGGGACACTTCTGGCAAG---------  1040

seq1  GTCCTAGGATGAGGCAGCCATGGGTTAAACATGGATGCTAGGATTAAACG  1096
                                                        
seq2  --------------------------------------------------  1040

seq1  GTGGAGATGGGAGTCCTGGGAATGAGACGGAAAAGAACCATAGCTGAGCA  1146
                                                        
seq2  --------------------------------------------------  1040

seq1  TGAGATACAAACTGACCAGGGAGAGAAAGGAGGGGGCTATGAGAGAAACC  1196
                                                        
seq2  --------------------------------------------------  1040

seq1  ACAGAGCAAG  1206
                
seq2  ----------  1040

seq1: chr6_50340742_50341758
seq2: B6Ng01-009I23.g_69_1084 (reverse)

seq1  TGTATTTTAGAGTTTATTACTGAGAACCAATCCTTTCTAGTTGTCTCAAA  50
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TGTATTTTAGAGTTTATTACTGAGAACCAATCC-TTCTAG-TGTCTCAAA  48

seq1  TTGGCTTAAAAAGGAAGTATCTGGATGTCATAAATATATCATTTGCAGAA  100
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGCTT-AAAAGGAAGTATC-GGATGTCATAAATATATCATTTGCAGAA  96

seq1  AGTTATGCCACTTGAGAAAGCTAAACATGTTAAGTCATATGGAAAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCCACTTGAGAAAGCTAAACATGTTAAGTCATATGGAAAATTAT  146

seq1  CTTACCAAATCTTGTGT-AAAAGATCC-TTGTACTTAAATATTCATACAA  198
      ||||||||||||||||| ||||||||| || |||||||||||||||||||
seq2  CTTACCAAATCTTGTGTAAAAAGATCCTTTATACTTAAATATTCATACAA  196

seq1  ATGATAGAGGCGTTAGTTAGAACAGGTGC-AAGCATTCTATTTCTGCAAG  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGATAGAGGCGTTAGTTAGAACAGGTGCAAAGCATTCTATTTCTGCAAG  246

seq1  TAGATAAGACAGTATGATCAACACCTGGGATTCACTTACCAAACATGCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAGACAGTATGATCAACACCTGGGATTCACTTACCAAACATGCAC  296

seq1  TGAATGGGCACTTGCTATAGGTCAAGCTTGGTGTGATATTTAATCAATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGCACTTGCTATAGGTCAAGCTTGGTGTGATATTTAATCAATCC  346

seq1  TGAGTGTCAGCTTAGCAGGATTTAAAGCCACTTTCAGAGACAAACCCATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCAGCTTAGCAGGATTTAAAGCCACTTTCAGAGACAAACCCATG  396

seq1  GACATGCCAAGCTGGGTGTTTCCAGAGAGATTTAGCTGAGCTGGGAAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCCAAGCTGGGTGTTTCCAGAGAGATTTAGCTGAGCTGGGAAGAC  446

seq1  CTGCCCTCATGGGTAGCGAGCGCCATTCTTTATCCCAGACTAAATAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCATGGGTAGCGAGCGCCATTCTTTATCCCAGACTAAATAAAAA  496

seq1  GGAAAGGGAAGAGGGGTGCTATCACGTATCTCTCTCTGCTTCCTGACTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAAGAGGGGTGCTATCACGTATCTCTCTCTGCTTCCTGACTGG  546

seq1  AGATGTGATGCCTGACATGAGCTGCCTCGTGCTCCTGCCATCATTCCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATGCCTGACATGAGCTGCCTCGTGCTCCTGCCATCATTCCTCC  596

seq1  TCTGTCTCGATGGACTGTCCCCTCAAACCATGAGCCAAAATAAAACCAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCGATGGACTGTCCCCTCAAACCATGAGCCAAAATAAAACCAAA  646

seq1  ATAAAACTTTCTTTAAGTGACATTTGTCAAGCATTTCATGACAGGAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTTCTTTAAGTGACATTTGTCAAGCATTTCATGACAGGAATGA  696

seq1  TAGAAGTAACTTATATACTCAGTTCCAGACAGGTGTTGACAAATTGACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAACTTATATACTCAGTTCCAGACAGGTGTTGACAAATTGACAC  746

seq1  TACATCACAGGGCATGTTCAAGATTCCCCAAGACAGAGCCGGGCGTGGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCACAGGGCATGTTCAAGATTCCCCAAGACAGAGCCGGGCGTGGTG  796

seq1  GCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCT  846

seq1  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  896

seq1  TATACAGAGACACCCTGTCTCGAAAAACAACAACAACAAAAAGATTCCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGACACCCTGTCTCGAAAAACAACAACAACAAAAAGATTCCCC  946

seq1  AAGACAGAAACAATGACCTCGGAGAAATCAACTTCTCCATGAAAAAAGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAACAATGACCTCGGAGAAATCAACTTCTCCATGAAAAAAGAC  996

seq1  TGACCCTTATGCAAGAATTC  1017
      ||||||||||||||||||||
seq2  TGACCCTTATGCAAGAATTC  1016