BAC Information

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BAC

Clone NameB6Ng01-009K13
Chromosome6 (Build37)
Map Location 37,088,177 - 37,325,201
singlet/doubletdoublet
Overlap geneDgki, Creb3l2
Upstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, EG665024
Downstream geneAkr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K13.bB6Ng01-009K13.g
ACCDH845541DH845542
length637256
definitionDH845541|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K13, 5' end.DH845542|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,088,177 - 37,088,813)(37,324,960 - 37,325,201)
sequence
gaattcacttaatactatatcccctgtttcaacatcccaagcactgggat
ttcaggcatgagccaccaaatcttgtgtatgtacatgattttggtggccc
tcaacttaatctcaaatagttgctaagggattttattcttccctttcccc
acttttcaataaataacattacagagcaagtccacaggttccttgcatcg
gatctcaatttaataggttaaacctgggtctggtcaacaggtttccagga
gaggattcttgtgagattttatagaaatctgaagatctgctactgggtaa
agagaaaggtcactctcaagggtcatgttctcttaggccttaagtatgat
ttactctgatgttagcacctggttttgtatcattttcatattaacagaac
attgtctctttgtcagcaaccttcagagtaaacactatgatgaaattctt
gattcagttggagagagatgtcagccacattcctgggcaagaggctactt
tttcttgccagatctccttaatttccccacttctatctagcttcaaaata
tgtctggtcaagtggttgttccgcttattagccgtccatgcggatggaag
cctttccttacatactccatgggtgttgttctctgtt
cggaattattaaaagacatttcaactgtcttggtagtttggggtttcatt
atggggtgttggtagtttgggaatgagtcatggagaagccagccctttgg
aggactcccagacagcaaaagaaccaaataaaattagagtgggtgggtgg
ggagttaaaagtaggaggcatattccgccctacagactttcaaggcacca
taaagagacacagagattacgaaactacatccctccttttgtgaaaccac
tgggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37088177_37088813
seq2: B6Ng01-009K13.b_43_679

seq1  GAATTCACTTAATACTATATCCCCTGCTTCAACATCCCAAGCACTGGGAT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCACTTAATACTATATCCCCTGTTTCAACATCCCAAGCACTGGGAT  50

seq1  TTCAGGCATGAGCCACCAAATCTTGTGTATGTACATGATTTTGGTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATGAGCCACCAAATCTTGTGTATGTACATGATTTTGGTGGCCC  100

seq1  TCAACTTAATCTCAAATAGTTGCTAAGGGATTTTATTCTTCCCTTTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTAATCTCAAATAGTTGCTAAGGGATTTTATTCTTCCCTTTCCCC  150

seq1  ACTTTTCAATAAATAACATTACAGAGCAAGTCCACAGGTTCCTTGCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAATAAATAACATTACAGAGCAAGTCCACAGGTTCCTTGCATCG  200

seq1  GATCTCAATTTAATAGGTTAAACCTGGGTCTGGTCAACAGGTTTCCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAATTTAATAGGTTAAACCTGGGTCTGGTCAACAGGTTTCCAGGA  250

seq1  GAGGATTCTTGTGAGATTTTATAGAAATCTGAAGATCTGCTACTGGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCTTGTGAGATTTTATAGAAATCTGAAGATCTGCTACTGGGTAA  300

seq1  AGAGAAAGGTCACTCTCAAGGGTCATGTTCTCTTAGGCCTTAAGTATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGTCACTCTCAAGGGTCATGTTCTCTTAGGCCTTAAGTATGAT  350

seq1  TTACTCTGATGTTAGCACCTGGTTTTGTAGCATTTTCATATTAACAGAAC  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTACTCTGATGTTAGCACCTGGTTTTGTATCATTTTCATATTAACAGAAC  400

seq1  ATTGTCTCTTTGTCAGCAACCTTCAGAGTAAACACTATGATGAAATTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCTTTGTCAGCAACCTTCAGAGTAAACACTATGATGAAATTCTT  450

seq1  GATTCAGTTGGAGAGAGATGTCAGCCACATTCCTGGGCAAGAGGCTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTTGGAGAGAGATGTCAGCCACATTCCTGGGCAAGAGGCTACTT  500

seq1  TTTCTTGCCAGATCTCCTTAATTTCCCCACTTCTATCTAGCTTCAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCAGATCTCCTTAATTTCCCCACTTCTATCTAGCTTCAAAATA  550

seq1  TGTCTGGTCAAGTGGTTGTTCCGCTTATTAGCCGTCCATGCGGATGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTCAAGTGGTTGTTCCGCTTATTAGCCGTCCATGCGGATGGAAG  600

seq1  CCTTTCCTTACATACTCCATGGGTGTTGTTCTCTGTT  637
      |||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTACATACTCCATGGGTGTTGTTCTCTGTT  637

seq1: chr6_37324960_37325201
seq2: B6Ng01-009K13.g_82_323 (reverse)

seq1  AGCCCAGTGGTTTCACAGAAGGAGGGTTGTTGTCTCGTAATCTCTGTGTC  50
      ||||||||||||||||| |||||||| ||| || ||||||||||||||||
seq2  AGCCCAGTGGTTTCACAAAAGGAGGGATGTAGTTTCGTAATCTCTGTGTC  50

seq1  TCTTTGTGGTGCCTTGAAAGTCTGTAGGGCGGAATGTGCCTCCTACTTTT  100
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTATGGTGCCTTGAAAGTCTGTAGGGCGGAATATGCCTCCTACTTTT  100

seq1  AACTCCCCACCCACCCACTCTAATTTTATTTGGTTCTTTTGCTGTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCACCCACCCACTCTAATTTTATTTGGTTCTTTTGCTGTCTGGG  150

seq1  AGTCCTCCAAAGGGCTGGCTTCTCCATGACTCATTCCCAAACTACCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCAAAGGGCTGGCTTCTCCATGACTCATTCCCAAACTACCAACA  200

seq1  CCCCATAATGAAACCCCAAACTACCAAGACAGTTGAAATGTC  242
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAATGAAACCCCAAACTACCAAGACAGTTGAAATGTC  242