BAC Information

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BAC

Clone NameB6Ng01-009L01
Chromosome6 (Build37)
Map Location 17,089,910 - 17,243,943
singlet/doubletdoublet
Overlap geneEG232599, Cav2
Upstream geneLOC100041116, Tcfec, EG435881, Tes
Downstream geneCav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L01.bB6Ng01-009L01.g
ACCDH845565DH845566
length993658
definitionDH845565|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L01, 5' end.DH845566|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,242,946 - 17,243,943)(17,089,910 - 17,090,564)
sequence
gaattcttcaactcccatttatcattttcaccattaaaaaaatggggaca
atagaatccatgtcataaggtacagatgaagttctcagctcctgagtgtt
taatcactgttcacattcctgtagttgattaaactgagagctctcagtca
tatacacatgaaggattgcaatgagaatgataatctctgccacttgcctc
tgaaaaacaccctagttctgccctgcaacatcccaaacaactccttgttc
tgctgtcccagttagctgagacagtagttgcctggaactgatctaccatt
cagctgtagcagggcctgattactgcccttctctccccttttgtgactgg
atggggctcagtgacaagtggctgggaggcagggaaagaaaagaatgctc
cacagatgacctgttgctctcatctcttcctgaatcatttatattggcga
gcaatatttgcccttggtgacatgctgtttcccaccgagtcccgtctctt
ccttcctctaatcctcctccacctctacttcttcccataaaggcaaaata
acttctccagccgagcacccacgctgggtaacataacacgcacaagggca
gtcagataggtgtccctgtcctattttggggtaattgttggagtggtgtc
ctctgatttctctgactgctctgtggtatcctttctctgtcacagacacc
atagctgggatcaacagtggacccgggcaaggtgaaagagacacaagtgg
tcacagctatacttggattttcatcttcagttttgctcactgggatgctc
tttagggtatttggtttctgcaagcccccaggctttccccaggccccctt
tcattcaataagacaaaagcaattttttgtggagaaaaagaagtctcttt
tgtgactggattttctccactcctatcattttcaccgaaccctgcttagg
aattgaacagaggtctccaaagcagctggggagggtcaaggta
gaattcatgcttaccataaaacctatgagagaatttgaacttgtcacatc
atgtgtgtgtgttcatgggtgtgcaggtgcacatgaatatgtgggtgtca
gaatcctctagatcttatatttactctcttgcttccttactgttctctga
aaggagacactcttattcccacagtgacctttcctctgagggtcaccggg
caggaacttttcaggtgtaactcattgcattcgccatggtgaggagtgat
tggtccttatttaaacatcagaatcaatgactcacagcctggaatcttat
ttcactgtttagctttgttgctagtggtgatgacttagaatgtcttatgg
agaggacagactgagatttctacttaggctcttgtcaccataggggagaa
atttcagaggtcaggtcatggaagaattgggtgtttttgcagagggatta
tacattcatgggatgagtgcaggcttgctgagagagagagagagagagag
agagagagagagagagagagagagagaacttggatttaggacagcatgtt
ttatgaccagaacagaaaagtctacaaggctagtgatgaggagatgccat
tatcgttaagcaaaggtcagttacaagttttttgcaaggaccaccactaa
tctcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_17242946_17243943
seq2: B6Ng01-009L01.b_49_1040 (reverse)

seq1  ACCTTGACCCTCCCCAGCTTGCTTTGGAGACCTCTGCTTCATATTCCTAA  50
      |||||||||||||||||| ||||||||||||||||| |||| ||||||||
seq2  ACCTTGACCCTCCCCAGC-TGCTTTGGAGACCTCTG-TTCA-ATTCCTAA  47

seq1  GCAGGGTTCGGTGGAAACTGAATAGGAGTGGAGAGAATCCAGTCCACAAA  100
      |||||||||||| |||| || ||||||||||||| |||||||| ||||||
seq2  GCAGGGTTCGGT-GAAAATG-ATAGGAGTGGAGAAAATCCAGT-CACAAA  94

seq1  AGAGACTTCTTTTTCTCCACAAAGAATTGCTTTTGTCTTATTGAATGAAA  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGACTTCTTTTTCTCCACAAAAAATTGCTTTTGTCTTATTGAATGAAA  144

seq1  GGGGGCCTGGGGGAAGCCTGGGGGCTCTGCAGGAACCAAATACCCTAAAG  200
      |||||||||||| ||||||||||||| ||||| |||||||||||||||||
seq2  GGGGGCCTGGGGAAAGCCTGGGGGCT-TGCAGAAACCAAATACCCTAAAG  193

seq1  AGCAT-CCAGTGAGCAAAACTGAAGATGAAAATCCAAGTATAGCTGTGAC  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCAGTGAGCAAAACTGAAGATGAAAATCCAAGTATAGCTGTGAC  243

seq1  CACTTGTGTCTCTTTCACCTTGCCCGGGTCCACTGTTGATCCCAGCTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGTCTCTTTCACCTTGCCCGGGTCCACTGTTGATCCCAGCTATG  293

seq1  GTGTCTGTGACAGAGAAAGGATACCACAGAGCAGTCAGAGAAATCAGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGACAGAGAAAGGATACCACAGAGCAGTCAGAGAAATCAGAGG  343

seq1  ACACCACTCCAACAATTACCCCAAAATAGGACAGGGACACCTATCTGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTCCAACAATTACCCCAAAATAGGACAGGGACACCTATCTGACT  393

seq1  GCCCTTGTGCGTGTTATGTTACCCAGCGTGGGTGCTCGGCTGGAGAAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTGCGTGTTATGTTACCCAGCGTGGGTGCTCGGCTGGAGAAGTT  443

seq1  ATTTTGCCTTTATGGGAAGAAGTAGAGGTGGAGGAGGATTAGAGGAAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCTTTATGGGAAGAAGTAGAGGTGGAGGAGGATTAGAGGAAGGA  493

seq1  AGAGACGGGACTCGGTGGGAAACAGCATGTCACCAAGGGCAAATATTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGGGACTCGGTGGGAAACAGCATGTCACCAAGGGCAAATATTGCT  543

seq1  CGCCAATATAAATGATTCAGGAAGAGATGAGAGCAACAGGTCATCTGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAATATAAATGATTCAGGAAGAGATGAGAGCAACAGGTCATCTGTGG  593

seq1  AGCATTCTTTTCTTTCCCTGCCTCCCAGCCACTTGTCACTGAGCCCCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTTTCTTTCCCTGCCTCCCAGCCACTTGTCACTGAGCCCCATC  643

seq1  CAGTCACAAAAGGGGAGAGAAGGGCAGTAATCAGGCCCTGCTACAGCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAAAAGGGGAGAGAAGGGCAGTAATCAGGCCCTGCTACAGCTGA  693

seq1  ATGGTAGATCAGTTCCAGGCAACTACTGTCTCAGCTAACTGGGACAGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATCAGTTCCAGGCAACTACTGTCTCAGCTAACTGGGACAGCAG  743

seq1  AACAAGGAGTTGTTTGGGATGTTGCAGGGCAGAACTAGGGTGTTTTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAGTTGTTTGGGATGTTGCAGGGCAGAACTAGGGTGTTTTTCAG  793

seq1  AGGCAAGTGGCAGAGATTATCATTCTCATTGCAATCCTTCATGTGTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTGGCAGAGATTATCATTCTCATTGCAATCCTTCATGTGTATAT  843

seq1  GACTGAGAGCTCTCAGTTTAATCAACTACAGGAATGTGAACAGTGATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAGCTCTCAGTTTAATCAACTACAGGAATGTGAACAGTGATTAA  893

seq1  ACACTCAGGAGCTGAGAACTTCATCTGTACCTTATGACATGGATTCTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGAGCTGAGAACTTCATCTGTACCTTATGACATGGATTCTATT  943

seq1  GTCCCCATTTTTTTAATGGTGAAAATGATAAATGGGAGTTGAAGAATTC  998
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATTTTTTTAATGGTGAAAATGATAAATGGGAGTTGAAGAATTC  992

seq1: chr6_17089910_17090564
seq2: B6Ng01-009L01.g_69_726

seq1  GAATTCATGCTTACCATAAAACCTATGAGAGAATTTGAACTTGTCACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTACCATAAAACCTATGAGAGAATTTGAACTTGTCACATC  50

seq1  ATGTGTGTGTGTTCATGGGTGTGCAGGTGCACATGAATATGTGGGTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTTCATGGGTGTGCAGGTGCACATGAATATGTGGGTGTCA  100

seq1  GAATCCTCTAGATCTTATATTTACTCTCTTGCTTCCTTACTGTTCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTCTAGATCTTATATTTACTCTCTTGCTTCCTTACTGTTCTCTGA  150

seq1  AAGGAGACACTCTTATTCCCACAGTGACCTTTCCTCTGAGGGTCACCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACACTCTTATTCCCACAGTGACCTTTCCTCTGAGGGTCACCGGG  200

seq1  CAGGAACTTTTCAGGTGTAACTCATTGCATTCGCCATGGTGAGGAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTTTTCAGGTGTAACTCATTGCATTCGCCATGGTGAGGAGTGAT  250

seq1  TGGTCCTTATTTAAACATCAGAATCAATGACTCACAGCCTGGAATCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTATTTAAACATCAGAATCAATGACTCACAGCCTGGAATCTTAT  300

seq1  TTCACTGTTTAGCTTTGTTGCTAGTGGTGATGACTTAGAATGTCTTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTTAGCTTTGTTGCTAGTGGTGATGACTTAGAATGTCTTATGG  350

seq1  AGAGGACAGACTGAGATTTCTACTTAGGCTCTTGTCACCATAGGGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACAGACTGAGATTTCTACTTAGGCTCTTGTCACCATAGGGGAGAA  400

seq1  ATTTCAGAGGTCAGGTCATGGAAGAATTGGGTGTTTTTGCAGAGGGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGGTCAGGTCATGGAAGAATTGGGTGTTTTTGCAGAGGGATTA  450

seq1  TACATTCATGGGATGAGTGCAGGCTTGCTGAGAGAGAGAGAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATGGGATGAGTGCAGGCTTGCTGAGAGAGAGAGAGAGAGAGAG  500

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAACTTGGATTTAGGACAGCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAACTTGGATTTAGGACAGCATGTT  550

seq1  TTATGACCAGAACAG-AAAGTCTACAAGGCTAGTGATGAGGAGATGCCAT  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTATGACCAGAACAGAAAAGTCTACAAGGCTAGTGATGAGGAGATGCCAT  600

seq1  TATCGTTAAGCAAAGGTCAGTTACAAG-TTTCTGCAAGGACCA-CACTAA  647
      ||||||||||||||||||||||||||| ||| ||||||||||| ||||||
seq2  TATCGTTAAGCAAAGGTCAGTTACAAGTTTTTTGCAAGGACCACCACTAA  650

seq1  TCTCAGCT  655
      ||||||||
seq2  TCTCAGCT  658