BAC Information

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BAC

Clone NameB6Ng01-009P01
Chromosome6 (Build37)12 (Build37)
Map Location 35,385,717 - 35,386,23650,585,072 - 50,586,236
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P01.bB6Ng01-009P01.g
ACCDH845749DH845750
length1,0581,129
definitionDH845749|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P01, 5' end.DH845750|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,385,717 - 35,386,236)(50,585,072 - 50,586,236)
sequence
gaattctgcactaaacccatctggtcctgggctttttttttgggagaata
ttaatgactgcttctatttcttcaggggatatgggactgtttagatcttt
aacttgatcctgatttaactttagtacctggtatctgtttagaaatttgt
ccatttcttccaggttttccagttttgttgaatatagccttatgtagaag
gatctgatggtgttttggatttcttcaggatctgttgttatgtctccctt
ttcatttctgattttgttaattaggattttgtccctgtgccctttagtga
gtctagctaagggtttatctatcttgttgattttctcaaagaaccaactc
ctcgtttggttaattctttgaatagttcttcttgtttccacttggttgat
ttcacccctgagtttgattatttcctgccgtctactcctcttgggtgaat
ttgcttcctttttttctagggcttttagatgtgttgtcaagctgctagta
tgtgctgtctcccgtttcttcttggaggcactcagcgctatgagtttccc
tcttagaaatgctttcattgtgtcccataggtttgggtacgttgtggctt
cattttcattaaactctaaaaagtctttaatttctttctttattccttcc
ttgaccaaggtatcattgagaagagtgttattcagtttccacgtgaatgt
tggctttccattatttatgttgttattgaagatcagtcttaggccatggt
ggtctgataggatacatgggacagtttcaatatttttgtatctatttgag
gcctgttttgtgaccaattatatggtcaattttggagaaggtcccgtgag
gtgctgagaagaaggtatatccttttgttttaggataaatgttctgtaga
tatctgtcaggtccatttgtttcataacttctgtagtttcactgtgtccc
tgtttagtttctgttctacgatctgtctttgaggaagtggtgtgttgaag
tcccccactattatggtgtgaggtgcatgtatgctttggagctttactaa
agtgtctc
gaattcactccatgtgaaaagcaaagtctcactagatgtgaattttacac
tgcgctagatcaatcccaataccagtaaatggatattattaaacagcatg
gggtagtgcaaactgggaaagaaaacttgtagtgtgctgcctttgagcag
acctggcttgcatgctgtgacagggcaattgtcgacatgctttttcatgc
caatctgcagctttttcaactctagatgctatggcaaccagggtttaaca
gactaagcagctaacaagcttccctgatggaattgtctggttgtgtgatt
gccttgtcttagggaaaatataaaatagaatgaagacgtttgtggacatt
tgtcaaactgattataatttggacagttgaatcataattgtctgttgtgt
gctgtacagtagtgacatatgctattttccacgttccatgcagagcacac
cagtgcattcccagataggattcatctcctttgggaacaatggatctggg
atgctgttggttccctgaaacatggcagtccacatctccctccagatcac
ctgcaaaacaaagtacatagaacagtgtgtatacacacacacatacacac
acacacacacatacacatatatatatatatgtactatttgagaagcttat
gtttaatttgagctatatttgtatgaaatataatgaatacaacttgatgc
aaaaagatatttctcttctagcataagttgtagatcaaaatatgcaagtg
aattaatttttatttatgattgggcataattttagttctttgggaatatt
gattttttaaatttgcaaccacttaaacatgtatttgtgtcacccatcgt
atgcataatttaaacactgagaacataatcaagctcctttgatggaatgg
tctggcttaatgtggcctgtcctgctgaaatgaagcagatattcctttct
gctttaaatgatcaaagtctactagtagatgatttctcagtcaaagcatt
gtactttcagatcatctcaggctaagtttactttattctgaggagtttta
attgataataaacattcagtgataccatgacttaggactggttcattacc
aataccattcttagaatcttttgtaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35385717_35386236
seq2: B6Ng01-009P01.b_586_1101 (reverse)

seq1  GAGACACTTTAGTAAAGCT-CAAAGCATACATTGCACCTCACACAATAAT  49
      ||||||||||||||||||| ||||||||||| |||||||||||| |||||
seq2  GAGACACTTTAGTAAAGCTCCAAAGCATACA-TGCACCTCACACCATAAT  49

seq1  AGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAAC  99
      |||||| |||||||||||||||| ||| ||||| |||||||||| | |||
seq2  AGTGGGGGACTTCAACACACCAC-TTCCTCAAA-GACAGATCGTAG-AAC  96

seq1  AGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATG  149
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAAACTAAACAGGGACACAGTGAAACT-ACAGAAGTTATGAAACAAATG  145

seq1  GACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATAC  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GACCTGACAGATATCTACAGAACA-TTTATCCTAAAACAAAAGGATATAC  194

seq1  CTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTG  244

seq1  GTCACAAAACAGGCCTC-AATAGATACAAAAATATTGAAATTGTCCCATG  298
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GTCACAAAACAGGCCTCAAATAGATACAAAAATATTGAAACTGTCCCATG  294

seq1  TATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAA  344

seq1  ATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAAT  394

seq1  GATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGA  444

seq1  GTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGA  494

seq1  AAGCATTTCTAAGAGGGAAACT  520
      ||||||||||||||||||||||
seq2  AAGCATTTCTAAGAGGGAAACT  516

seq1: chr12_50585072_50586236
seq2: B6Ng01-009P01.g_69_1197

seq1  GAATTCACTCCATGTGAAAAGCAAAGTCTCACTAGATGTGAATTTTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCATGTGAAAAGCAAAGTCTCACTAGATGTGAATTTTACAC  50

seq1  TGCGCTAGATCAATCCCAATACCAGTAAATGGATATTATTAAACAGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTAGATCAATCCCAATACCAGTAAATGGATATTATTAAACAGCATG  100

seq1  GGGTAGTGCAAACTGGGAAAGAAAACTTGTAGTGTGCTGCCTTTGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGCAAACTGGGAAAGAAAACTTGTAGTGTGCTGCCTTTGAGCAG  150

seq1  ACCTGGCTTGCATGCTGTGACAGGGCAATTGTCGACATGCTTTTTCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTTGCATGCTGTGACAGGGCAATTGTCGACATGCTTTTTCATGC  200

seq1  CAATCTGCAGCTTTTTCAACTCTAGATGCTATGGCAACCAGGGTTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCAGCTTTTTCAACTCTAGATGCTATGGCAACCAGGGTTTAACA  250

seq1  GACTAAGCAGCTAACAAGCTTCCCTGATGGAATTGTCTGGTTGTGTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGCAGCTAACAAGCTTCCCTGATGGAATTGTCTGGTTGTGTGATT  300

seq1  GCCTTGTCTTAGGGAAAATATAAAATAGAATGAAGACGTTTGTGGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTTAGGGAAAATATAAAATAGAATGAAGACGTTTGTGGACATT  350

seq1  TGTCAAACTGATTATAATTTGGACAGTTGAATCATAATTGTCTGTTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAACTGATTATAATTTGGACAGTTGAATCATAATTGTCTGTTGTGT  400

seq1  GCTGTACAGTAGTGACATATGCTATTTTCCACGTTCCATGCAGAGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACAGTAGTGACATATGCTATTTTCCACGTTCCATGCAGAGCACAC  450

seq1  CAGTGCATTCCCAGATAGGATTCATCTCCTTTGGGAACAATGGATCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATTCCCAGATAGGATTCATCTCCTTTGGGAACAATGGATCTGGG  500

seq1  ATGCTGTTGGTTCCCTGAAACATGGCAGTCCACATCTCCCTCCAGATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTGGTTCCCTGAAACATGGCAGTCCACATCTCCCTCCAGATCAC  550

seq1  CTGCAAAACAAAGTACATAGAACAGTGTGTATACACACACACATACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAACAAAGTACATAGAACAGTGTGTATACACACACACATACACAC  600

seq1  ACACACACACATACACATATATATATATATGTACTATTTGAGAAGCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATACACATATATATATATATGTACTATTTGAGAAGCTTAT  650

seq1  GTTTAATTTGAGCTATATTTGTATGAAATATAATGAATACAACTTGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTGAGCTATATTTGTATGAAATATAATGAATACAACTTGATGC  700

seq1  AAAAAGATATTTCTCTTCTAGCATAAGTTGTAGATCAAAATATGCAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATATTTCTCTTCTAGCATAAGTTGTAGATCAAAATATGCAAGTG  750

seq1  AATTAATTTTTATTTATGATTGGGCATAATTTTAGTTCTTTGGGAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTTATTTATGATTGGGCATAATTTTAGTTCTTTGGGAATATT  800

seq1  GATTTTTTAAATTTGCAACCACTTAAACATGTATTTGTGTCACCCATCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAATTTGCAACCACTTAAACATGTATTTGTGTCACCCATCGT  850

seq1  ATGCATAATTTAAAACACTGAGAACATAATCAAGCTCCTTTGATGGAATG  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAATTT-AAACACTGAGAACATAATCAAGCTCCTTTGATGGAATG  899

seq1  GTCTGGCTTTAATGTGGCCTTGTCCTGCTGAAAATGAAGCAGATATTCCT  950
      ||||||| ||||||||||| |||||||||| |||||||||||||||||||
seq2  GTCTGGC-TTAATGTGGCC-TGTCCTGCTG-AAATGAAGCAGATATTCCT  946

seq1  TTCTGCTTTAAATGATCAAAAGTCTACTAGTAGAATTGATTTCTTCAGTC  1000
      ||||||||||||||||| ||||||||||||||||  ||||||| ||||||
seq2  TTCTGCTTTAAATGATC-AAAGTCTACTAGTAGA--TGATTTC-TCAGTC  992

seq1  AAAGGCATTGTACTTTCAAGATCATCTCAGGCTTAGGTTTTACTTTATTC  1050
      ||| ||||||||||||| ||||||||||||||| ||  ||||||||||||
seq2  AAA-GCATTGTACTTTC-AGATCATCTCAGGCTAAG--TTTACTTTATTC  1038

seq1  TGAGGAGTTTTTAAAATTGGAATTATTAAAACATTTCAAAGTGAATTACC  1100
      |||||||||||   |||||  || ||  |||||||    |||||  ||||
seq2  TGAGGAGTTTT---AATTG--ATAAT--AAACATT---CAGTGA--TACC  1076

seq1  ATGACATAAGAACTGTGTTTCAATTTTACAAATACCCATCCCTTAGAATC  1150
      ||||| || ||    || ||||   |||| ||||||  |  |||||||||
seq2  ATGACTTAGGA---CTGGTTCA---TTACCAATACCATT--CTTAGAATC  1118

seq1  TTTTTTTGTTAAGAC  1165
      ||||     ||||||
seq2  TTTT----GTAAGAC  1129