BAC Information

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BAC

Clone NameB6Ng01-009P14
Chromosome6 (Build37)
Map Location 72,042,167 - 72,196,012
singlet/doubletdoublet
Overlap geneSt3gal5, Atoh8
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057
Downstream geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P14.bB6Ng01-009P14.g
ACCDH845775DH845776
length1,1341,110
definitionDH845775|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P14, 5' end.DH845776|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,042,167 - 72,043,304)(72,194,891 - 72,196,012)
sequence
gaattcatggcttcaaacatcctaggcaagcgttctagcaactgggttac
attcccagctcgtttttcttttctaatttaacattttatatgctcctttt
atttttctaatgttaatatacagttgcctcctccattgctgttttatgtg
agtgtgtttattcttttttcaactacaaacatcccagccaatttgattca
ggcataattaatgactccttatccctggagcactcttgttcatggctggg
atctttgaggttgggtcctggcaaagctgcccgtgaaagggagttggttt
tctgggccgatctgcaggagagggaaaatctcctttcttctctgtgagca
atgcaacctgagagttcccttgtcctatcctgatcctaagctgccctctg
aagctgtgccctcggttggggactttttagaaagtggtactatacatttg
atttgctcctctgagtaaaagcaatgtggtttatgtaaaatgtttacaaa
acaaaacccagaaaagccagagaagataaaaatgttctatgccggtaatg
gtggtgcaggccctataatcctagcacccagggggctcgaggcaggagta
gtgccaagagtttgagggatcctctgtccctctttccctctgcctgggcc
ccacggggagttccaagtcactagaggttacagacagaggcagcactgcc
tgtcagccttcggtgccactgttttgacaccattttctgttccaggtccc
tttcctcccacactgccagccacctccccagttccttctgcagccggcat
gtatcatatgaatgacggcagaaggaaggacttctgggagaatgagctga
ggtcctgggtgcttgttaaaatcacacacacacatacccacacacagaat
acccctcagaggcttgagggggagtgagtcatccacagaggaacctatag
ctcatatactggaatggacggagggtttcagactgctttaatctactatc
tcaaattttctgtaatatctgaaaaatggctcctttctaatctctgcagc
acatctgtgatttgtatagccttggatttctccctcgtttacccttctta
ctatttaaaggtctatttttttgccatcctctga
gaattccttaccctggacaaagagaaccatccaggctagccatctgagat
tcaccttctcaggagccagtcagatcaagttcgatccagctgatgagtgg
cagggagacacatctgatgacatcctaggtggccctgtcatggtctccct
ctgggcaacattggcttttctctttcattttctgcgagtgaatttctgtt
tcagcaaccctgtctgtcactactcagtccctactgtcagcctcttagaa
ctctgtcaagcccctcaccctgagacctcattcatcttgctagttctcca
tcaggtgcagggtcctctctgtggggagcttgcaccatagcaacagtcaa
agaagctacctgggtcccttggagtgtttactctcaaccctcccttacag
ttttccagctctctgaagcagctcagcttctctcgagtccctgatcccta
atgtctggcaaactttctggcttggatggaggggaggcaacctccacctg
agtgtctagctgctcccagcactccagttcctgaccataacacttttagc
cattctgctcatctgtgtgttgatggcatctaagtctgtccgtcctcatc
ctgctgcctgctgaccgcctctctctgctctctgtccttgtacagatagg
ggggtcatttagctccaaggccatcccctaaaccgatctaagcacaaagc
ccccagactaagtccatcagtgaagctgtgaacccatctctttcctgagg
aaggacccccatggagcctgaccttcagaattctgtccccacacgccctg
gccctgagctaacaggccttggcgacacttccttgctctgacacctggcc
tttgcctgacctcatgagcaggacagggcgcaggctcatccctcatagct
gaccatcctctggctgccaagtctggctatgacatctttccctgagcaac
cttattttgagacagcaatccaaaggcgccacaggcatgtaccaccctag
tacactgcttcacaccgtcgttcctctagcgtctgaatatgacgaactgg
gtcttcaaatctggaatgccgggtttcttttctttcctgaaattttcctg
ttggaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72042167_72043304
seq2: B6Ng01-009P14.b_47_1180

seq1  GAATTCATGGCTTCAAACATCCTAGGCAAGCGTTCTAGCAACTGGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCTTCAAACATCCTAGGCAAGCGTTCTAGCAACTGGGTTAC  50

seq1  ATTCCCAGCTCGTTTTTCTTTTCTAATTTAACATTTTATATGCTCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCTCGTTTTTCTTTTCTAATTTAACATTTTATATGCTCCTTTT  100

seq1  ATTTTTCTAATGTTAATATACAGTTGCCTCCTCCATTGCTGTTTTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAATGTTAATATACAGTTGCCTCCTCCATTGCTGTTTTATGTG  150

seq1  AGTGTGTTTATTCTTTTTTCAACTACAAACATCCCAGCCAATTTGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTATTCTTTTTTCAACTACAAACATCCCAGCCAATTTGATTCA  200

seq1  GGCATAATTAATGACTCCTTATCCCTGGAGCACTCTTGTTCATGGCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAATTAATGACTCCTTATCCCTGGAGCACTCTTGTTCATGGCTGGG  250

seq1  ATCTTTGAGGTTGGGTCCTGGCAAAGCTGCCCGTGAAAGGGAGTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAGGTTGGGTCCTGGCAAAGCTGCCCGTGAAAGGGAGTTGGTTT  300

seq1  TCTGGGCCGATCTGCAGGAGAGGGAAAATCTCCTTTCTTCTCTGTGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCGATCTGCAGGAGAGGGAAAATCTCCTTTCTTCTCTGTGAGCA  350

seq1  ATGCAACCTGAGAGTTCCCTTGTCCTATCCTGATCCTAAGCTGCCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACCTGAGAGTTCCCTTGTCCTATCCTGATCCTAAGCTGCCCTCTG  400

seq1  AAGCTGTGCCCTCGGTTGGGGACTTTTTAGAAAGTGGTACTATACATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGCCCTCGGTTGGGGACTTTTTAGAAAGTGGTACTATACATTTG  450

seq1  ATTTGCTCCTCTGAGTAAAAGCAATGTGGTTTATGTAAAATGTTTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCCTCTGAGTAAAAGCAATGTGGTTTATGTAAAATGTTTACAAA  500

seq1  ACAAAACCCAGAAAAGCCAGAGAAGATAAAAATGTTCTATGCCGGTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCAGAAAAGCCAGAGAAGATAAAAATGTTCTATGCCGGTAATG  550

seq1  GTGGTGCAGGCCCTATAATCCTAGCACCCAGGGGGCTCGAGGCAGGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAGGCCCTATAATCCTAGCACCCAGGGGGCTCGAGGCAGGAGTA  600

seq1  GTGCCAAGAGTTTGAGGGATCCTCTGTCCCTCTTTCCCTCTGCCTGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGAGTTTGAGGGATCCTCTGTCCCTCTTTCCCTCTGCCTGGGCC  650

seq1  CCACGGGGAGTTCCAAGTCACTAGAGGTTACAGACAGAGGCAGCACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGGAGTTCCAAGTCACTAGAGGTTACAGACAGAGGCAGCACTGCC  700

seq1  TGTCAGCCTTCGGTGCCACTGTTTTGACACCA-TTTCTGTTCCAGGTCCC  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTCAGCCTTCGGTGCCACTGTTTTGACACCATTTTCTGTTCCAGGTCCC  750

seq1  TTTCCTCCCACACTGCCAGCCACCTCCCCAGTTCCTTCTGCAGCCGGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCCACACTGCCAGCCACCTCCCCAGTTCCTTCTGCAGCCGGCAT  800

seq1  GTATCATATGAATGACGGCAGAAGGAAGGACTTCTGGGAGAATGAGCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATATGAATGACGGCAGAAGGAAGGACTTCTGGGAGAATGAGCTGA  850

seq1  GGTCCTGGGTGCTTGTTAAAATCACACACACACATACACACACACAGAAT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTCCTGGGTGCTTGTTAAAATCACACACACACATACCCACACACAGAAT  900

seq1  ACCACTCAGAGGCTTGA-GGGGAGTGAGTTCAATCCACAGAGGAACCCAT  948
      ||| ||||||||||||| |||||||||||   ||||||||||||||| ||
seq2  ACCCCTCAGAGGCTTGAGGGGGAGTGAGT--CATCCACAGAGGAACCTAT  948

seq1  AGCCTCATATAACTGGAATGGACGGAGGGTTTCAGGACTGCTTTAATCTA  998
      || ||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AG-CTCATAT-ACTGGAATGGACGGAGGGTTTCA-GACTGCTTTAATCTA  995

seq1  CTATCTCAAAATTTTCTGTAAATATCTGAGAAATGTCTCCTTTCTAATCT  1048
      ||||||| ||||||||||| ||||||||| ||||| ||||||||||||||
seq2  CTATCTC-AAATTTTCTGT-AATATCTGAAAAATGGCTCCTTTCTAATCT  1043

seq1  CTGCAGCAC-TCTGTG-TTTGTATAGCCTTGG-TTTCTTCCTCAGGTCTA  1095
      ||||||||| |||||| ||||||||||||||| ||||| ||||  || ||
seq2  CTGCAGCACATCTGTGATTTGTATAGCCTTGGATTTCTCCCTC--GTTTA  1091

seq1  CCCTTCTTACCATCTAAAGG-CTATTTTTTTGCACTTCCTCTGA  1138
      |||||||||| || |||||| |||||||||||| | ||||||||
seq2  CCCTTCTTACTATTTAAAGGTCTATTTTTTTGC-CATCCTCTGA  1134

seq1: chr6_72194891_72196012
seq2: B6Ng01-009P14.g_67_1176 (reverse)

seq1  TTTGTTCCAAAGGGGAAATTACAGG-AAGAAAAGTAAACACGGCCATCCA  49
      ||||||||||  || ||||| |||| |||||||| |||| ||||  ||||
seq2  TTTGTTCCAACAGGAAAATTTCAGGAAAGAAAAG-AAACCCGGCATTCCA  49

seq1  GATTTGAAG-GCCAGTTCGTGCAGTGTCAGGGCGCTAGAGGGACGGGGTG  98
      |||||||||  ||||||||| ||   ||| | ||||||||| |||  | |
seq2  GATTTGAAGACCCAGTTCGT-CATATTCA-GACGCTAGAGGAACGACG-G  96

seq1  TGTGAGCGCGTGTGCTAGCGTGTGTACATGCCTGTGGGCGCCGTTGGGTT  148
      |||||    |||| |||| ||| |||||||||||| |||||| || || |
seq2  TGTGAAGCAGTGTACTAGGGTG-GTACATGCCTGT-GGCGCC-TTTGGAT  143

seq1  TGCTGTCTCAAAATAAGGGCTGCTCAGTGGAAAGATGTCATAAGCCAGAC  198
      |||||||||||||||| || ||||||| ||||||||||||| ||||||||
seq2  TGCTGTCTCAAAATAA-GGTTGCTCAG-GGAAAGATGTCAT-AGCCAGAC  190

seq1  TTGGGCAGCCAGGGGATGGGCCAGCCAGGGAGGGCTGAGCCTGGCGCCCA  248
      || ||||||||| |||| || |||| |  ||||| ||||||| |||||| 
seq2  TT-GGCAGCCAGAGGAT-GGTCAGCTA-TGAGGGATGAGCCT-GCGCCCT  236

seq1  GGCCTGCTCATGAGGTCAGGCAAAGGCCAGGTGTCAGAGCAAGGGAGTGT  298
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCTGCTCATGAGGTCAGGCAAAGGCCAGGTGTCAGAGCAAGGAAGTGT  286

seq1  CGCCAAGGCCTGTTAGCCAAGGGCCAGGGCGTGTGGGGACAGAATTCTGA  348
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  CGCCAAGGCCTGTTAGCTCAGGGCCAGGGCGTGTGGGGACAGAATTCTGA  336

seq1  AGGTCAGGCTCCATGGGGGTCCTTCCTCAGGAAAGAGATGGGTTCACAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGCTCCATGGGGGTCCTTCCTCAGGAAAGAGATGGGTTCACAGC  386

seq1  TTCACTGATGGACTTGGTCTGGGGGCTTTGTGCTTAGATCGGTTTAGGGG  448
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCACTGATGGACTTAGTCTGGGGGCTTTGTGCTTAGATCGGTTTAGGGG  436

seq1  ATGGCCTTGGAGCTAAATGACCCCCCTATCTGTACAAGGACAGAGAGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTGGAGCTAAATGACCCCCCTATCTGTACAAGGACAGAGAGCAG  486

seq1  AGAGAGGCGGTCAGCAGGCAGCAGGATGAGGACGGACAGACTTAGATGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCGGTCAGCAGGCAGCAGGATGAGGACGGACAGACTTAGATGCC  536

seq1  ATCAACACACAGATGAGCAGAATGGCTAAAAGTGTTATGGTCAGGAACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACACAGATGAGCAGAATGGCTAAAAGTGTTATGGTCAGGAACTG  586

seq1  GAGTGCTGGGAGCAGCTAGACACTCAGGTGGAGGTTGCCTCCCCTCCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGAGCAGCTAGACACTCAGGTGGAGGTTGCCTCCCCTCCATC  636

seq1  CAAGCCAGAAAGTTTGCCAGACATTAGGGATCAGGGACTCGAGAGAAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGAAAGTTTGCCAGACATTAGGGATCAGGGACTCGAGAGAAGCT  686

seq1  GAGCTGCTTCAGAGAGCTGGAAAACTGTAAGGGAGGGTTGAGAGTAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTCAGAGAGCTGGAAAACTGTAAGGGAGGGTTGAGAGTAAACA  736

seq1  CTCCAAGGGACCCAGGTAGCTTCTTTGACTGTTGCTATGGTGCAAGCTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGGACCCAGGTAGCTTCTTTGACTGTTGCTATGGTGCAAGCTCC  786

seq1  CCACAGAGAGGACCCTGCACCTGATGGAGAACTAGCAAGATGAATGAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAGGACCCTGCACCTGATGGAGAACTAGCAAGATGAATGAGGT  836

seq1  CTCAGGGTGAGGGGCTTGACAGAGTTCTAAGAGGCTGACAGTAGGGACTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTGAGGGGCTTGACAGAGTTCTAAGAGGCTGACAGTAGGGACTG  886

seq1  AGTAGTGACAGACAGGGTTGCTGAAACAGAAATTCACTCGCAGAAAATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGACAGACAGGGTTGCTGAAACAGAAATTCACTCGCAGAAAATGA  936

seq1  AAGAGAAAAGCCAATGTTGCCCAGAGGGAGACCATGACAGGGCCACCTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGCCAATGTTGCCCAGAGGGAGACCATGACAGGGCCACCTAG  986

seq1  GATGTCATCAGATGTGTCTCCCTGCCACTCATCAGCTGGATCGAACTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCATCAGATGTGTCTCCCTGCCACTCATCAGCTGGATCGAACTTGA  1036

seq1  TCTGACTGGCTCCTGAGAAGGTGAATCTCAGATGGCTAGCCTGGATGGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGGCTCCTGAGAAGGTGAATCTCAGATGGCTAGCCTGGATGGTT  1086

seq1  CTCTTTGTCCAGGGTAAGGAATTC  1122
      ||||||||||||||||||||||||
seq2  CTCTTTGTCCAGGGTAAGGAATTC  1110