BAC Information

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BAC

Clone NameB6Ng01-010E03
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,452 - 18,835,968132,350,187 - 132,351,262
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010E03.bB6Ng01-010E03.g
ACCDH845977DH845978
length9491,065
definitionDH845977|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E03, 5' end.DH845978|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(132,350,187 - 132,351,262)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaaaatcctttcccaaactgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacaggataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagttttatcatac
agatctttcacttccttagttagagtcacgcctagatattttatatatt
gaattcttatccagggtgcagccctggtgtaggggcactggtctctagca
tggctgtgattgcagaggagaaatccccaggaggaatgaagagcccattc
aaggatggtctgtatacaggcttggtgttttactgctgtgaacagacacc
aaggccaaggcaactcttagaaggactacattaaattgggactggcttgc
aggttcagaggttcagttcagtatcattaaggcaggaacatgacagcatc
caggcagccgtggtgcaggcagagctgagaattctacatcttcatccgaa
ggctgctggcagaatactggagtccaggcagctaggatcagggtcttaaa
gcccatgcccacagttacacacctactccaacaaggccacaccttctaat
aatgtcaccacttgggccaaaaccatcacacacaccaacacaagtggttt
tggacccctgaatgaggcttcacagtcaggagatccactttggcctatct
ttctgttgttactttgttagtagttttgaattatttcagccgactgatgc
taactgcttacttttaatcaacccttctctactatgaacatcttcccaga
tccccatttttgttttaacttcttacatctaatctctgttctattctgtt
gttgttgttgttgttgctcctactactagttccacctactttttagacta
aaaaaaaaaaaaaaagacaacaaaaaaaaaacccctgtggcctgtctccc
cttcttttttgcttctcacatagtttattattcccaatctggagtattac
atatactcggcctgcccctaacattttcaaggccaaagattgactataat
tactagcccctgctctacaaactaatgccctttttcctataccactgtga
acatcctttgacatatgtaatatgtagcacacttagacattcaagccatg
tctaccataacacttaacattgacctcatcgccttttggaataagagtgt
gtactgcccagtgactgccctgagaatcaactcctctctcccttgcttct
tgccctctggtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-010E03.b_46_563 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCCTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACCGTCAATAAGACAAAAAGACCACCAACAGTTTGGGAAAGGATTTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr1_132350187_132351262
seq2: B6Ng01-010E03.g_66_1130 (reverse)

seq1  AGAGACAGAGAGAGCAAGAAAGCAAGGAGAGAGAGAGAGATTGATTCTTC  50
      ||||||  |||| ||||| |||||||| ||||||| ||| ||||||| ||
seq2  AGAGAC-CAGAGGGCAAG-AAGCAAGG-GAGAGAG-GAG-TTGATTC-TC  44

seq1  AGGGCAGTCACTGTGGCTAGTACACACTTCTAATCCAAAAGGCGATGAGG  100
      ||||||||||||| ||| ||||||||||  || |||||||||||||||||
seq2  AGGGCAGTCACTG-GGC-AGTACACACTCTTATTCCAAAAGGCGATGAGG  92

seq1  TCAATGTTAAGTGTTATGGTAGACATGGCTTGAATGTCTAAGTTGTGCTA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAATGTTAAGTGTTATGGTAGACATGGCTTGAATGTCTAAG-TGTGCTA  141

seq1  CATAATTACATATGTCAAAGGATGTTCACAGTGGTATAGGAAAAAGGGCA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-ATTACATATGTCAAAGGATGTTCACAGTGGTATAGGAAAAAGGGCA  190

seq1  TTAGTTTGTAGAGCAGGGGCTAGTAATTATAGTCAATCTTTGGCCTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTAGAGCAGGGGCTAGTAATTATAGTCAATCTTTGGCCTTGAA  240

seq1  AATGTTAGGGGCAGGCCTGAGTATATGTAATACTCCAGATTGGGAATAAT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATGTTAGGGGCAGGCC-GAGTATATGTAATACTCCAGATTGGGAATAAT  289

seq1  AAACTATGTGAGAAGCAAAAAAGAAGGGGAGACAGGCCACAGGGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGTGAGAAGCAAAAAAGAAGGGGAGACAGGCCACAGGGGTTTTT  339

seq1  TTTTTGTTGTCTTTTTTTTTTTTTTTTAGTCTAAAAAGTAGGTGGAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGTCTTTTTTTTTTTTTTTTAGTCTAAAAAGTAGGTGGAACTA  389

seq1  GTAGTAGGAGCAACAACAACAACAACAACAGAATAGAACAGAGATTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGGAGCAACAACAACAACAACAACAGAATAGAACAGAGATTAGAT  439

seq1  GTAAGAAGTTAAAACAAAAATGGGGATCTGGGAAGATGTTCATAGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGTTAAAACAAAAATGGGGATCTGGGAAGATGTTCATAGTAGAG  489

seq1  AAGGGTTGATTAAAAGTAAGCAGTTAGCATCAGTCGGCTGAAATAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGATTAAAAGTAAGCAGTTAGCATCAGTCGGCTGAAATAATTCA  539

seq1  AAACTACTAACAAAGTAACAACAGAAAGATAGGCCAAAGTGGATCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTAACAAAGTAACAACAGAAAGATAGGCCAAAGTGGATCTCCTG  589

seq1  ACTGTGAAGCCTCATTCAGGGGTCCAAAACCACTTGTGTTGGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAGCCTCATTCAGGGGTCCAAAACCACTTGTGTTGGTGTGTGTG  639

seq1  ATGGTTTTGGCCCAAGTGGTGACATTATTAGAAGGTGTGGCCTTGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTGGCCCAAGTGGTGACATTATTAGAAGGTGTGGCCTTGTTGGA  689

seq1  GTAGGTGTGTAACTGTGGGCATGGGCTTTAAGACCCTGATCCTAGCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGTGTAACTGTGGGCATGGGCTTTAAGACCCTGATCCTAGCTGCC  739

seq1  TGGACTCCAGTATTCTGCCAGCAGCCTTCGGATGAAGATGTAGAATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCAGTATTCTGCCAGCAGCCTTCGGATGAAGATGTAGAATTCTC  789

seq1  AGCTCTGCCTGCACCACGGCTGCCTGGATGCTGTCATGTTCCTGCCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCTGCACCACGGCTGCCTGGATGCTGTCATGTTCCTGCCTTAA  839

seq1  TGATACTGAACTGAACCTCTGAACCTGCAAGCCAGTCCCAATTTAATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGAACTGAACCTCTGAACCTGCAAGCCAGTCCCAATTTAATGTA  889

seq1  GTCCTTCTAAGAGTTGCCTTGGCCTTGGTGTCTGTTCACAGCAGTAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTAAGAGTTGCCTTGGCCTTGGTGTCTGTTCACAGCAGTAAAAC  939

seq1  ACCAAGCCTGTATACAGACCATCCTTGAATGGGCTCTTCATTCCTCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTGTATACAGACCATCCTTGAATGGGCTCTTCATTCCTCCTGG  989

seq1  GGATTTCTCCTCTGCAATCACAGCCATGCTAGAGACCAGTGCCCCTACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTCCTCTGCAATCACAGCCATGCTAGAGACCAGTGCCCCTACAC  1039

seq1  CAGGGCTGCACCCTGGATAAGAATTC  1076
      ||||||||||||||||||||||||||
seq2  CAGGGCTGCACCCTGGATAAGAATTC  1065