BAC Information

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BAC

Clone NameB6Ng01-010P06
Chromosome6 (Build37)
Map Location 33,707,178 - 33,792,601
singlet/doubletdoublet
Overlap geneExoc4
Upstream geneChchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P06.bB6Ng01-010P06.g
ACCDH846474DH846475
length5261,029
definitionDH846474|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P06, 5' end.DH846475|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,792,101 - 33,792,601)(33,707,178 - 33,708,209)
sequence
gaattcccccactgcctgaggtgcactgagaaaccctgtctcataagaca
aaaacaaaaccaaaaaaaaaaaacccttgaaaataataataaaataaaga
actagttacatctaagtaaaacacacctgaaattgatttctctcaaaatg
gggttaatgcaatttgcttgtcaaactgctcacatgccaaaccatggaca
agtctttctggcataaaatccaataaaacaaagcacacactatgaccaat
tttttggaaaactaaactatgatgcagaatgggctccttttaatggtaga
tctttggagtatactagagaatttgatatttgatctaattatatgggtgt
atgtacttcactagggcaaaagtgaggaaacatttgtataatttgatttt
ccttcaagtttaatatgaggactattctgattgaatgatcaaaacaagag
taaagaaagctagatccgtaattctagctgttctaaatccaaggtagtgc
cagagagggtgtgtgtgtgtggtgtg
gaattctgatgggataacatcctaggttggctttatgtagttgcattgaa
tagatgatgttaactatattgtggttctataagatttaagctatgttgtt
gggggctgggattactattatgggaacgggtgaactgttataggaaattt
agatactacctatatattaaatttatatatcatagaccgttgaaagctgg
gctaccgcaatagaaaattgaaaacaataatatatattcatctgtgagtt
gagaacaactgataatggtctgatatatataccataaattttttaataaa
agaaataaaacattaaaaataaagttgaaattctcctttgtcttctagtt
cctattctttcccattctcagcctgcaaactcgggatcattttaaatgaa
agagactcatatttctcacaaactatacataagcaatttcaatgagaaat
gggcactatttgtgaatctgccctttaatttgtcctataattttgttttc
ttctcatcatacttttcctttgactcctatagtctaatttcttttgagaa
ttaatcaaagtattttgctacatcccgcatagaaatcatgcttttctgtt
ccattctctttcatttaattagtaaaataacttatcttttaaaaaattga
aacttgtattgagatgcattgatgaccttgctgtctccatggaaacagcc
tgagcccacagatactaatgtgtgtggtgtcatatttatgtttttctgat
ctatttaaacaccttttttttttctctgtttgtcttccagatttattcag
gagattgaacatgccctgggacttggccctgccaaacagtgtcctctttc
gagagtttcttaccgtgtatatcaagagcatcttccttaatcaggtcttg
gctgagatcaacaaggagattgaagcgtcaccaaaacctcagaccccttg
aagatcctggctaatgcagacaccatgaaggtctgggagtgcagcggctc
ttctacagtagtcagagaccgcctccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33792101_33792601
seq2: B6Ng01-010P06.b_70_568 (reverse)

seq1  CACACACACACACACACACCCTCTCTGGCACTACCTTGGATTTAGAACAG  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAC-CACACACACACACCCTCTCTGGCACTACCTTGGATTTAGAACAG  49

seq1  CTAGAATTACGGATCTAGCTTTCTTTACTCTTGTTTTGATCATTCAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTACGGATCTAGCTTTCTTTACTCTTGTTTTGATCATTCAATCA  99

seq1  GACTAGTCCTCATATTAAACTTGAAGGAAAATCAAATTATACAAATGTTT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTCCTCATATTAAACTTGAAGGAAAATCAAATTATACAAATGTTT  149

seq1  CCTCACTTTTGCCCTAGTGAAGTATATACACCCATATAATTAGATCAAAT  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTCACTTTTGCCCTAGTGAAGTACATACACCCATATAATTAGATCAAAT  199

seq1  ATCAAATTCTCTAGTATACTCCAAAGATCTACCATTAAAAGGAGCCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCTCTAGTATACTCCAAAGATCTACCATTAAAAGGAGCCCATT  249

seq1  CTGCATCATAGTTTAGTTTTCCATAAATTTGGTCATAGTGTCTGCTTTGT  300
      ||||||||||||||||||||||| ||| ||||||||||||| ||||||||
seq2  CTGCATCATAGTTTAGTTTTCCAAAAAATTGGTCATAGTGTGTGCTTTGT  299

seq1  TTTATTGGATTTTATGCCTGAAAGACTTGTCCATGGTTTTGCATGTGAGC  350
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TTTATTGGATTTTATGCCAGAAAGACTTGTCCATGGTTTGGCATGTGAGC  349

seq1  AGTTTGACAAGCAAATTGTATTAACCCCATTATGAGAGAAATCACTTTCA  400
      |||||||||||||||||| |||||||||||| |||||||||||| |||||
seq2  AGTTTGACAAGCAAATTGCATTAACCCCATTTTGAGAGAAATCAATTTCA  399

seq1  GGTGTGTTTTACTTAGATGTAACTAGTTCTTTATTTTATTATTATTCTTT  450
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  GGTGTGTTTTACTTAGATGTAACTAGTTCTTTATTTTATTATTATT-TTC  448

seq1  TTTTTTTTTTTTTTTTTGGGTTTGTTTTTGTCTTTTGAGACAGGGTTTCT  500
           |||||||||||||| |||||||||||||| |||||||||||||||
seq2  AAGGGTTTTTTTTTTTTGGTTTTGTTTTTGTCTTATGAGACAGGGTTTCT  498

seq1  C  501
      |
seq2  C  499

seq1: chr6_33707178_33708209
seq2: B6Ng01-010P06.g_64_1092

seq1  GAATTCTGATGGGATAACATCATAGTTTGGCTTTATGTAGTTACATTGAA  50
      ||||||||||||||||||||| ||| |||||||||||||||| |||||||
seq2  GAATTCTGATGGGATAACATCCTAGGTTGGCTTTATGTAGTTGCATTGAA  50

seq1  TAGATGATGTTAACTATATTGTAGTTCTATAAGATTTAAGCTATGTTGTT  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGATGATGTTAACTATATTGTGGTTCTATAAGATTTAAGCTATGTTGTT  100

seq1  GGGGGCTGGTATTACTATTATAGTAACTGGTGAACTATTATAGGAAATTT  150
      ||||||||| ||||||||||| | ||| |||||||| |||||||||||||
seq2  GGGGGCTGGGATTACTATTATGGGAACGGGTGAACTGTTATAGGAAATTT  150

seq1  AGATACTACATATATATTAAATTTATATATAATAAACCATTGAAAGCAAG  200
      ||||||||| |||||||||||||||||||| ||| ||| ||||||||  |
seq2  AGATACTACCTATATATTAAATTTATATATCATAGACCGTTGAAAGCTGG  200

seq1  GCTACCTCTATAGAAAATTGAAAACAATAATATATATTCATCTGTGAGTT  250
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCGCAATAGAAAATTGAAAACAATAATATATATTCATCTGTGAGTT  250

seq1  AAGAACAACTGTTAATGTTCTGATATATATACCATAAATTTTTTAATAAA  300
       |||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  GAGAACAACTGATAATGGTCTGATATATATACCATAAATTTTTTAATAAA  300

seq1  AGAAATAAAACATTAAAAATAAAGTTGAAATTCTCCTTTGTCTTCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAACATTAAAAATAAAGTTGAAATTCTCCTTTGTCTTCTAGTT  350

seq1  CCTATTCTTTCCCATTCTCAGCCTGCAAACTCGGGATCATTTTAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTTTCCCATTCTCAGCCTGCAAACTCGGGATCATTTTAAATGAA  400

seq1  AGAGACTCATATTTCTCACAAACTATACATAAGCAATTTCAATGAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCATATTTCTCACAAACTATACATAAGCAATTTCAATGAGAAAT  450

seq1  GGGCACTATTTGTGAATCTGCCCTTTAATTTGTCCTATAATTTTGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTATTTGTGAATCTGCCCTTTAATTTGTCCTATAATTTTGTTTTC  500

seq1  TTCTCATCATACTTTTCCTTTGACTCCTATAGTCTAATTTCTTTTGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCATACTTTTCCTTTGACTCCTATAGTCTAATTTCTTTTGAGAA  550

seq1  TTAATCAAAGTATTTTGCTACATCCCGCATAGAAATCATGCTTTTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAAGTATTTTGCTACATCCCGCATAGAAATCATGCTTTTCTGTT  600

seq1  CCATTCTCTTTCATTTAATTAGTAAAATAACTTATCTTTTAAAAAATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTTTCATTTAATTAGTAAAATAACTTATCTTTTAAAAAATTGA  650

seq1  AACTTGTATTGAGATGCATTGATGACCTTGCTGTCTCCATGGAAACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATTGAGATGCATTGATGACCTTGCTGTCTCCATGGAAACAGCC  700

seq1  TGAGCCCACAGATACTAATGTGTGTGGTGTCATATTTATGTTTTTCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCACAGATACTAATGTGTGTGGTGTCATATTTATGTTTTTCTGAT  750

seq1  CTATTTAAACACC-TTTTTTTTTCTCTGTTTGTCTTCCAGATTTATTCAG  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTATTTAAACACCTTTTTTTTTTCTCTGTTTGTCTTCCAGATTTATTCAG  800

seq1  GAGATTGAACATGCCCTGGGACTTGGCCCTGCCAAACAGTGTCCTC-TTC  848
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGATTGAACATGCCCTGGGACTTGGCCCTGCCAAACAGTGTCCTCTTTC  850

seq1  GAGAGTTTCTTACCGTGTATATCAAGAGCATCTTCCTTAATCAGGTCTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTCTTACCGTGTATATCAAGAGCATCTTCCTTAATCAGGTCTTG  900

seq1  GCTGAGATCAACAAGGAGATTGAAGGCGTCACCAAAACCTCAGACCCCTT  948
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTGAGATCAACAAGGAGATTGAA-GCGTCACCAAAACCTCAGACCCCTT  949

seq1  GAAGATCCTGGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCAGCGGC  998
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  GAAGATCCTGGCTAATGCAGACACCATGAAGG-TCTGGGAGTGCAGCGG-  997

seq1  CTCTTCTACAGGTAGTCAGGAGGACCG-CTCCTTC  1032
      |||||||||| ||||||||   ||||| |||||||
seq2  CTCTTCTACA-GTAGTCAG--AGACCGCCTCCTTC  1029