BAC Information

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BAC

Clone NameB6Ng01-011A15
Chromosome6 (Build37)
Map Location 76,447,284 - 76,581,493
singlet/doubletdoublet
Overlap geneEG668155
Upstream geneEG668145, EG546907, LOC100042952, LOC668153
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A15.bB6Ng01-011A15.g
ACCDH846534DH846535
length1,1651,041
definitionDH846534|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A15, 5' end.DH846535|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,580,321 - 76,581,493)(76,447,284 - 76,448,327)
sequence
gaattcaaatactagcatacaattttctcctcattctagggagaaaatat
tgcagatttccatttaaaatgagcagatctctctaataatggtagtggat
tttattttcttgagtactgcatggtaagtgttaagatactgaaggaattt
gaatggtgctgggtaatcacttgccacacatggtagaagctcttccattg
acaactgatctcttcacaccatcaaaaagttgcgtatctcatttcttctt
tctgtagacacaatttactgcaaggtactctttgaagaaagttctcattt
tcttctttcattatgtctcttttcttccctccctgtcttgttctctctct
ctttagcttcctccctccatttctctattttctgcttttctttaaaaagt
catattttgggtaatgtaataagaaactgttttttacaatgtctgctctc
aaatgaaagaaatatatttatagctgcctgaaaggaaaattaatctcctt
ccttctgttattacaatgcccttttttaaatgtcccagttgcatcaatta
tttgtcctaaactttcaattctttcttgaactacaaatgactgtggattt
gatcatgtgttaacactttatgaaatgaattggattttctgggtctcagt
tcactttaacgtgtttaaatgaccagtactgggagtcagaagaagcaaag
cttttgtgactagccatcatggtgagacatgggtagctcatgaaataggc
tggtaccagactcagccaacactgtacaggagaaatttaccacatatgtt
cagtctagagtgtataattcaacacaatgcaattgtggtattgaagaacc
attgtgtgatcacttttgactagatgtcagagaaatttttcttttaaagg
ccaaatagtaactattttaggttgggaggatcaaatgaccctcacacgtg
tgtgtatgcacacacagtttcacatatgatatagatatactttcttgtat
ttatctcttgctttctctcttctcaattataatttcttttggaataaaaa
tttaaattacaaatcatattaagtttaagatcaattaaagccttggctgt
aagcacattgacctacttctaggcaccccggattcatgtgaatatccttc
taccctctaggctaa
gaattcccggctcctcagagctccgtgggaggccaagtgccccagtagct
ttaagctctccaagccagagtagcagctatagaggagcgtccccaaggcc
tgtagtcccccgaaggtaaatcggaccacagcttcaactaaggccagcaa
agaaagcaggaatcctcgacccaagtgcagaagactggtcagtaccgtgt
gtggcagattgtagatgaaggccaaaagccaggccagggtagccaggagg
gaggacatgagcaggaagttgagatccaacatcaaggtcagcaagtccag
caccaggcccaccccattcaccaccaggtagacagcctccatgatagggc
tgcgaagttcaggacaaaaggaaggctggctcctcagggaaggcggtgtc
aaggttgccactattgtggagagatcggagtgaatttggaagggatgcga
acgtctaaccaaggaagaagcaagggctacagaagtgggcttcagggaag
acttttacagaagggaacgccgtcccggcttggaaggcggaatgttcggg
agcgaagaggtgaaacatctctaaagtgacagcgagcctggaccggagga
agcacctcagcgttaggagcctggagcggtaaacaggacagggccacggg
tcagaccgggaggagacccgcaaggatgggagtcgggaagggccgggtcg
ggccgggtgggggcggcgcaggctgggcgcgggctcgtcccgctcgcggc
gagtgacacccaaagggagagcggggacagaaagtcagcctcggcaaacc
ccgagcgcggcctcgactctcctcgtgactctttaactggtatttttggt
attttccaataacgccctccccacccctttgggttgtgtttttttccttt
aaataccccttccccagctactcattgtccaccgtcctctacccctgcat
ggtgcatgactgtggggccccagaaggccttgaataaaaagtcctctgcc
ggcttgcatcagcccttgtcttgtgaatgtttaggtgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76580321_76581493
seq2: B6Ng01-011A15.b_31_1195 (reverse)

seq1  TTAGCCTAAGAGGGTAGAAAGATAATCAACATGGAAAACAGGGTGCCTAG  50
      ||||||| ||||||||||| |||| || |||| |||  | ||||||||||
seq2  TTAGCCT-AGAGGGTAGAAGGATATTC-ACAT-GAATCCGGGGTGCCTAG  47

seq1  AAAGTAGGTCAATGTGC-TACAGCCAAAGCTTTAAATGGATCTTAAACTA  99
       |||||||||||||||| ||||||||| ||||| ||| ||||||||||| 
seq2  -AAGTAGGTCAATGTGCTTACAGCCAAGGCTTT-AATTGATCTTAAACTT  95

seq1  ATAATGAATTTTGTAATTTTAAATTTTTATTCAAAAAGAAAATAATAATT  149
      |  ||||  ||||||| ||||||||||||||| ||||| |||| ||||||
seq2  AATATGA--TTTGTAA-TTTAAATTTTTATTCCAAAAG-AAATTATAATT  141

seq1  GAGAAGAGAGAAAGCAAAGAGATAAATACAAGAAAGTATATCTATATCAT  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAGAAAGC-AAGAGATAAATACAAGAAAGTATATCTATATCAT  190

seq1  ATGTGAAACTGTGTGTGCATACACACACGTGTGAGGGTCATTTGATCCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAACTGTGTGTGCATACACACACGTGTGAGGGTCATTTGATCCTC  240

seq1  CAAACCTAAAATAGTTACTATTTGGCCTTTAAAAG-AAAATTTCTCTGAC  298
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAACCTAAAATAGTTACTATTTGGCCTTTAAAAGAAAAATTTCTCTGAC  290

seq1  ATCTAGTCAAAAGTGATCACACAATGGTTCTTCAATACCACAATTGCATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCAAAAGTGATCACACAATGGTTCTTCAATACCACAATTGCATT  340

seq1  GTGTTGAATTATACACTCTAGACTGAACATATGTGGTAAATTTCTCCTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAATTATACACTCTAGACTGAACATATGTGGTAAATTTCTCCTGT  390

seq1  ACAGTGTTGGCTGAGTCTGGTACCAGCCTATTTCATGAGCTACCCATGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGGCTGAGTCTGGTACCAGCCTATTTCATGAGCTACCCATGTC  440

seq1  TCACCATGATGGCTAGTCACAAAAGCTTTGCTTCTTCTGACTCCCAGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGATGGCTAGTCACAAAAGCTTTGCTTCTTCTGACTCCCAGTAC  490

seq1  TGGTCATTTAAACACGTTAAAGTGAACTGAGACCCAGAAAATCCAATTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTTAAACACGTTAAAGTGAACTGAGACCCAGAAAATCCAATTCA  540

seq1  TTTCATAAAGTGTTAACACATGATCAAATCCACAGTCATTTGTAGTTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAGTGTTAACACATGATCAAATCCACAGTCATTTGTAGTTCAA  590

seq1  GAAAGAATTGAAAGTTTAGGACAAATAATTGATGCAACTGGGACATTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATTGAAAGTTTAGGACAAATAATTGATGCAACTGGGACATTTAA  640

seq1  AAAAGGGCATTGTAATAACAGAAGGAAGGAGATTAATTTTCCTTTCAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCATTGTAATAACAGAAGGAAGGAGATTAATTTTCCTTTCAGGC  690

seq1  AGCTATAAATATATTTCTTTCATTTGAGAGCAGACATTGTAAAAAACAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAATATATTTCTTTCATTTGAGAGCAGACATTGTAAAAAACAGT  740

seq1  TTCTTATTACATTACCCAAAATATGACTTTTTAAAGAAAAGCAGAAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTACATTACCCAAAATATGACTTTTTAAAGAAAAGCAGAAAATA  790

seq1  GAGAAATGGAGGGAGGAAGCTAAAGAGAGAGAGAACAAGACAGGGAGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGAGGGAGGAAGCTAAAGAGAGAGAGAACAAGACAGGGAGGGA  840

seq1  AGAAAAGAGACATAATGAAAGAAGAAAATGAGAACTTTCTTCAAAGAGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGACATAATGAAAGAAGAAAATGAGAACTTTCTTCAAAGAGTA  890

seq1  CCTTGCAGTAAATTGTGTCTACAGAAAGAAGAAATGAGATACGCAACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGTAAATTGTGTCTACAGAAAGAAGAAATGAGATACGCAACTTT  940

seq1  TTGATGGTGTGAAGAGATCAGTTGTCAATGGAAGAGCTTCTACCATGTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTGTGAAGAGATCAGTTGTCAATGGAAGAGCTTCTACCATGTGT  990

seq1  GGCAAGTGATTACCCAGCACCATTCAAATTCCTTCAGTATCTTAACACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGATTACCCAGCACCATTCAAATTCCTTCAGTATCTTAACACTT  1040

seq1  ACCATGCAGTACTCAAGAAAATAAAATCCACTACCATTATTAGAGAGATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAGTACTCAAGAAAATAAAATCCACTACCATTATTAGAGAGATC  1090

seq1  TGCTCATTTTAAATGGAAATCTGCAATATTTTCTCCCTAGAATGAGGAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTTAAATGGAAATCTGCAATATTTTCTCCCTAGAATGAGGAGA  1140

seq1  AAATTGTATGCTAGTATTTGAATTC  1173
      |||||||||||||||||||||||||
seq2  AAATTGTATGCTAGTATTTGAATTC  1165

seq1: chr6_76447284_76448327
seq2: B6Ng01-011A15.g_66_1106

seq1  GAATTCCCGGCTCCTCAGAGCTCCGTGGGAGGCCAAGTGCCCCAGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGCTCCTCAGAGCTCCGTGGGAGGCCAAGTGCCCCAGTAGCT  50

seq1  TTAAGCTCTCCAAGCCAGAGTAGCAGCTATAGAGGAGCGTCCCCAAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTCCAAGCCAGAGTAGCAGCTATAGAGGAGCGTCCCCAAGGCC  100

seq1  TGTAGTCCCCCGAAGGTAAATCGGACCACAGCTTCAACTAAGGCCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCCCCGAAGGTAAATCGGACCACAGCTTCAACTAAGGCCAGCAA  150

seq1  AGAAAGCAGGAATCCTCGACCCAAGTGCAGAAGACTGGTCAGTACCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAGGAATCCTCGACCCAAGTGCAGAAGACTGGTCAGTACCGTGT  200

seq1  GTGGCAGATTGTAGATGAAGGCCAAAAGCCAGGCCAGGGTAGCCAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGATTGTAGATGAAGGCCAAAAGCCAGGCCAGGGTAGCCAGGAGG  250

seq1  GAGGACATGAGCAGGAAGTTGAGATCCAACATCAAGGTCAGCAAGTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATGAGCAGGAAGTTGAGATCCAACATCAAGGTCAGCAAGTCCAG  300

seq1  CACCAGGCCCACCCCATTCACCACCAGGTAGACAGCCTCCATGATAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCCCACCCCATTCACCACCAGGTAGACAGCCTCCATGATAGGGC  350

seq1  TGCGAAGTTCAGGACAAAAGGAAGGCTGGCTCCTCAGGGAAGGCGGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGTTCAGGACAAAAGGAAGGCTGGCTCCTCAGGGAAGGCGGTGTC  400

seq1  AAGGTTGCCACTATTGTGGAGAGATCGGAGTGAATTTGGAAGGGATGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCCACTATTGTGGAGAGATCGGAGTGAATTTGGAAGGGATGCGA  450

seq1  ACGTCTAACCAAGGAAGAAGCAAGGGCTACAGAAGTGGGCTTCAGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTAACCAAGGAAGAAGCAAGGGCTACAGAAGTGGGCTTCAGGGAAG  500

seq1  ACTTTTACAGAAGGGAACGCCGTCCCGGCTTGGAAGGCGGAATGTTCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACAGAAGGGAACGCCGTCCCGGCTTGGAAGGCGGAATGTTCGGG  550

seq1  AGCGAAGAGGTGAAACATCTCTAAAGTGACAGCGAGCCTGGACCGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGAGGTGAAACATCTCTAAAGTGACAGCGAGCCTGGACCGGAGGA  600

seq1  AGCACCTCAGCGTTAGGAGCCTGGAGCGGTAAACAGGACAGGGCCACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCAGCGTTAGGAGCCTGGAGCGGTAAACAGGACAGGGCCACGGG  650

seq1  TCAGACCGGGAGGAGACCCGCAAGGATGGGAGTCGGGAAGGGCCGGGTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCGGGAGGAGACCCGCAAGGATGGGAGTCGGGAAGGGCCGGGTCG  700

seq1  GGCCGGGTGGGGGCGGCGCAGGCTGGGCGCGGGCTCGTCCCGCTCGCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGTGGGGGCGGCGCAGGCTGGGCGCGGGCTCGTCCCGCTCGCGGC  750

seq1  GAGTGACACCCAAAGGGAGAGC-GGGACAGAAAGTCAGCCTCGGCAAACC  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGTGACACCCAAAGGGAGAGCGGGGACAGAAAGTCAGCCTCGGCAAACC  800

seq1  CCGAGCGCGGCCTCGACTCTCCTCGTGACTC-TTAACTGGTATTTTTGGT  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGAGCGCGGCCTCGACTCTCCTCGTGACTCTTTAACTGGTATTTTTGGT  850

seq1  ATTTTCCAATAACGCCCTCCCCACCCCTTTGGGTTGTGTTTTTTTCCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAATAACGCCCTCCCCACCCCTTTGGGTTGTGTTTTTTTCCTTT  900

seq1  AAATACCCCTTTCCCCAGCTACTCAGTGTCCACCGTCCTCTACCCCTGCA  948
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  AAATACCCC-TTCCCCAGCTACTCATTGTCCACCGTCCTCTACCCCTGCA  949

seq1  TGGTGCATGACTGT-GGGCCCCAGAAAGGGCCTGGAATAAAAAGTCCTCT  997
      |||||||||||||| |||||||||||  ||||| ||||||||||||||||
seq2  TGGTGCATGACTGTGGGGCCCCAGAA--GGCCTTGAATAAAAAGTCCTCT  997

seq1  TGCGGTTTGCATCAAGGCCGTGTCTTGTGAATGTTTTGGGGTGTTGC  1044
        ||| ||||||| || || ||||||||||||||||   ||||||||
seq2  GCCGGCTTGCATC-AGCCCTTGTCTTGTGAATGTTT--AGGTGTTGC  1041