BAC Information

Click to search

BAC

Clone NameB6Ng01-011G12
Chromosome6 (Build37)
Map Location 114,605,749 - 114,751,835
singlet/doubletdoublet
Overlap geneAtg7
Upstream geneIrak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1
Downstream geneVgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011G12.bB6Ng01-011G12.g
ACCDH846801DH846802
length1,062203
definitionDH846801|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G12, 5' end.DH846802|Mus musculus domesticus DNA, BAC clone: B6Ng01-011G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,750,768 - 114,751,835)(114,605,749 - 114,605,951)
sequence
gaattctgtggctcactacatcctgcttttctccttaatgtcacctgaag
aggacattctctcagaagccatcagtttagtggaaagccctgctctgcac
aaggcagtggctggtaaaagtaggctttagtgctttgcacttcctggtcg
acatcaatggacagccctgatgtgcatcttacaccacaagtgctacctgc
aagttggcaagtgagagaaactgactgaattgtgcagcttccctgaggta
ggccagagatatcaggggacaaagggcatgatgatcttcaagccaccact
gagctatgaaaaaggatgctcagagctcctactgttcctccaaattaaga
taccccttctcacagcaccagaaaacccatcaactcagcaagcacatagc
tcatctgcttaggacatgggtactgtggccacttacatcattattgtggc
tataaatgaagtattttgtcctgaagtggctcagggctggatgctagtaa
ttagtaagctaatttctgaattaatttcccacattggaagtatggtgtag
ggagtgagatcctccaccctccccaacccctgcactgttcctaagtcata
agccagttgaaggcctgcaaatcttaacatttacaaagtggttagcagaa
cacttgggatataagcatcagcctctccaacagccagcccctgcttatct
ggggggtgcgcatgtgttctaagactcccatggacttctgaaaccagaga
gtgtggaacactgcgaatgctggctgcttctacctgccaacacacacgat
aaggctcactttcgtaagtcagacacagcaagggggagataagagtaatt
gaaaggccaatcagacaatcttaacaaaggagtgagacgaaactgccagc
ctcatcaacctggcaggttggggccatttaattacactagcaccctgata
ctgactgtagcaggcacgtgacactgagctggtgctaagtgactgaaggg
gtgggttgtgtatcaccataatgagaggataaggggccattcatggctaa
tgagggatgggg
atcccagtgacatttgtttttacattcttgtttgtttattaatgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgctggttcgtgcgagta
tactttcatgccatggcactcacgtagaggtgagaacagttgcagggtta
attctttccttccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114750768_114751835
seq2: B6Ng01-011G12.b_44_1105 (reverse)

seq1  CCCCACTCCCTCCATAAGCCATGAATGGCCCCTTTGTCCTACACATTTAT  50
      ||||| ||||| ||| |||||||||||||||| || |||| | || ||||
seq2  CCCCA-TCCCT-CATTAGCCATGAATGGCCCC-TTATCCT-CTCA-TTAT  45

seq1  GGTGTATACACAACCCACCCC-TCAGTCACTTAGCACCCAGCTCAGTTGT  99
      |||| |||||||||||||||| |||||||||||||| ||||||||| |||
seq2  GGTG-ATACACAACCCACCCCTTCAGTCACTTAGCA-CCAGCTCAG-TGT  92

seq1  CACGCTGCCTGCTACAGTCAGTATCAGGGTGCTAGTGTATTTAAATGGCC  149
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACG-TGCCTGCTACAGTCAGTATCAGGGTGCTAGTGTAATTAAATGGCC  141

seq1  CCAACCTGCCAGGTTGATGAGGCTGGCAGTTTCGTCTCACTCCTTTGTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGCCAGGTTGATGAGGCTGGCAGTTTCGTCTCACTCCTTTGTTA  191

seq1  AGATTGTCTGATTGG-CTTTCAATTACTCTTATCTCCCCCTTGCTGTGTC  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGATTGTCTGATTGGCCTTTCAATTACTCTTATCTCCCCCTTGCTGTGTC  241

seq1  TGACTTACG-AAGTGAGCCTTATCGTGTGTGTTGGCAGGTAGAAGCAGCC  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACGAAAGTGAGCCTTATCGTGTGTGTTGGCAGGTAGAAGCAGCC  291

seq1  AGCATTCGCAGTGTTCCACACTCTCTGGTTTCAGAAGTCCATGGGAGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCGCAGTGTTCCACACTCTCTGGTTTCAGAAGTCCATGGGAGTCT  341

seq1  TAGAACACATGCGCACCCCCCAGATAAGCAGGGGCTGGCTGTTGGAGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACATGCGCACCCCCCAGATAAGCAGGGGCTGGCTGTTGGAGAGG  391

seq1  CTGATGCTTATATCCCAAGTGTTCTGCTAACCACTTTGTAAATGTTAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTTATATCCCAAGTGTTCTGCTAACCACTTTGTAAATGTTAAGA  441

seq1  TTTGCAGGCCTTCAACTGGCTTATGACTTAGGAACAGTGCAGGGGTTGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGCCTTCAACTGGCTTATGACTTAGGAACAGTGCAGGGGTTGGG  491

seq1  GAGGGTGGAGGATCTCACTCCCTACACCATACTTCCAATGTGGGAAATTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGAGGATCTCACTCCCTACACCATACTTCCAATGTGGGAAATTA  541

seq1  ATTCAGAAATTAGCTTACTAATTACTAGCATCCAGCCCTGAGCCACTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAATTAGCTTACTAATTACTAGCATCCAGCCCTGAGCCACTTCA  591

seq1  GGACAAAATACTTCATTTATAGCCACAATAATGATGTAAGTGGCCACAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAATACTTCATTTATAGCCACAATAATGATGTAAGTGGCCACAGT  641

seq1  ACCCATGTCCTAAGCAGATGAGCTATGTGCTTGCTGAGTTGATGGGTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTCCTAAGCAGATGAGCTATGTGCTTGCTGAGTTGATGGGTTTT  691

seq1  CTGGTGCTGTGAGAAGGGGTATCTTAATTTGGAGGAACAGTAGGAGCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTGTGAGAAGGGGTATCTTAATTTGGAGGAACAGTAGGAGCTCT  741

seq1  GAGCATCCTTTTTCATAGCTCAGTGGTGGCTTGAAGATCATCATGCCCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCTTTTTCATAGCTCAGTGGTGGCTTGAAGATCATCATGCCCTT  791

seq1  TGTCCCCTGATATCTCTGGCCTACCTCAGGGAAGCTGCACAATTCAGTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTGATATCTCTGGCCTACCTCAGGGAAGCTGCACAATTCAGTCA  841

seq1  GTTTCTCTCACTTGCCAACTTGCAGGTAGCACTTGTGGTGTAAGATGCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCACTTGCCAACTTGCAGGTAGCACTTGTGGTGTAAGATGCAC  891

seq1  ATCAGGGCTGTCCATTGATGTCGACCAGGAAGTGCAAAGCACTAAAGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGCTGTCCATTGATGTCGACCAGGAAGTGCAAAGCACTAAAGCCT  941

seq1  ACTTTTACCAGCCACTGCCTTGTGCAGAGCAGGGCTTTCCACTAAACTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACCAGCCACTGCCTTGTGCAGAGCAGGGCTTTCCACTAAACTGA  991

seq1  TGGCTTCTGAGAGAATGTCCTCTTCAGGTGACATTAAGGAGAAAAGCAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGAGAGAATGTCCTCTTCAGGTGACATTAAGGAGAAAAGCAGG  1041

seq1  ATGTAGTGAGCCACAGAATTC  1068
      |||||||||||||||||||||
seq2  ATGTAGTGAGCCACAGAATTC  1062

seq1: chr6_114605749_114605951
seq2: B6Ng01-011G12.g_72_274

seq1  ATCCCAGTGACATTTGTTTTTACATTCTTGTTTGTTTATTAATGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTGACATTTGTTTTTACATTCTTGTTTGTTTATTAATGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCTGGTTCGTGCGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCTGGTTCGTGCGAGTA  100

seq1  TACTTTCATGCCATGGCACTCACGTAGAGGTGAGAACAGTTGCAGGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCATGCCATGGCACTCACGTAGAGGTGAGAACAGTTGCAGGGTTA  150

seq1  ATTCTTTCCTTCCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCTTCCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  200

seq1  GTG  203
      |||
seq2  GTG  203