BAC Information

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BAC

Clone NameB6Ng01-011J18
Chromosome6 (Build37)
Map Location 18,437,570 - 18,568,202
singlet/doubletdoublet
Overlap geneCttnbp2
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011J18.bB6Ng01-011J18.g
ACCDH846945DH846946
length1,1621,092
definitionDH846945|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J18, 5' end.DH846946|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,567,019 - 18,568,202)(18,437,570 - 18,438,670)
sequence
gaattcctctgagtagaagcataagtagtcttaaacattgaaacacatac
ttccaatgcctgtaagagaaataatgtagacgctagcttagattttggtg
tagtggacatccttttaagaaaacagtatcagaaatcttaaagcacacat
aaaacaatagtaatgtttttgagatgagtttaagtttcaagagattaaac
taatgcatttagaaattgtagtagcatttgctacttttacaaaataatgg
gtttcattgtgttttcattaaagtatagaatgttgtaatcatgccctccc
ccagtcactcatccctagccttctcttcctgatctgattgccctttctaa
tcacatatctttccccaaatattccctctgaaacactttttaaagagtgg
tacactcagatatttgtgtgttcataatatctgggaacacagtaacctgt
tgaaattgatggcatgagtctaagaatctagcattatccataatgcacca
accacgaaacaaaaataattttgaatatttaaaacagatcaaacccaata
tagaaattttcacacatggagtataacactgagaaggaccaaagatgcaa
ccctgagtctgatcatctcaaaaagctactttgatgctaaatgaacgaag
taggctacaatattagcgaagtcaaatgtgggtggcacacagaggatgct
gtgagcacaatggccagtctgtggaagggagaaccattaaaggaaagcac
ctgcactagggcagagcagctgagccctagcttcctcattcctcctatca
cctaggcccctctcaatgctccccagtgcccagatccatctttgagccaa
tataaacagaacttaacccagtcaccatgtgtggcaaatggctgtgcagg
gaaagagtgaggttgtccaagcacaaataagctcaagactgccatatatg
atttgcgtagataataatgtttaatactacttctttctttcattttcatg
tcccaaaggaatagaggcagatcatcaataacactttttttcttatttca
tatggcatactgaaaacaagatttaatctagcgtaaataggtaagaattg
cagtcttttagggaaagccaaattaccgaaaaccttatttatacaggagc
ttgaatgtgttt
gaattcaacccattaacaatgcctattaaggttttctaaaattcttccac
taattttccaaccaacctttcctccctcaaaccctcctgacatcttatta
ccactttccaaatgggaacaaaactccatggagccattgattatagtcat
gaagagatgtggcttcttaattccaccagtgagattgtattatttttgtt
aagatacttgagcagaaagctcactaccttttatattttgggatctggat
atatagccaagaactcaggattcttttgcctcggtctctagagttaggat
tgcaggtacatatcaccatgcttacctgacgaattttcagagtgtcactc
caggaaggaggggacactcacccactactgcatcatcaccttcatgctaa
ccttcacagattatttagagacttttaaaaaataatttaaaactcatttc
agggagctactcagatgattcagtaattaagaacaccagatgctcttgca
gaaagcctgggtttgatacatagcacccacatcatggctcaggcaactcc
tgttctatggggatctgataccctcttctaacatccacagcaaccaggca
cacacaaggcaagaagacatacatgccagcaaaacattcttataataaaa
gatacaaaatttaaaaaaaaaatgtttctactgacttatattttgtgaat
gtaactgcattttaatactgtaattacttaaaacatcaagcttttttcat
tgctattcactgtctctatgcaaagacggtggctttaggggaaactccta
aaacatgttcaaaatatgctaaagcggacagactccaatgactcaggcaa
ctcttataggggatgacaattaattggggctgggtaacaggttcagaagg
ttcagctctttatcatcaaggtgggaagcatggcagcattcagacaggca
tggtgcaagaagagctgagagttctacatctcatctgaaggctgctacag
aatactggcttctaggaagctagtctaggataaactcaaatctcacctta
cttcaccaggctcacttctatatgctgaagaagtcagctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18567019_18568202
seq2: B6Ng01-011J18.b_43_1204 (reverse)

seq1  AAACACATTTCAAAGCTTCCTTTGTATAAATAAGTATTTTTCTGTTATTT  50
      |||||||||   ||||| |   ||||||||||||   ||||| | || ||
seq2  AAACACATT--CAAGCTCC---TGTATAAATAAG--GTTTTC-GGTAATT  42

seq1  TTGCTTTTCCTATAAAGACCTGCATTTCTTTTGGCTTATTTACGCTATGA  100
      | ||||| |||| ||||| ||||| |||||    | ||||||||||| ||
seq2  TGGCTTTCCCTA-AAAGA-CTGCAATTCTT---ACCTATTTACGCTA-GA  86

seq1  TTTAAATCTTTGTCTCAGTAATGCCATATGAAAATAAGAAAAAAGGTGTT  150
       |||||||||  | ||||| |||||||||| ||||||||||||| |||||
seq2  -TTAAATCTTGTTTTCAGT-ATGCCATATG-AAATAAGAAAAAAAGTGTT  133

seq1  AATTGATGATTCTGCCTCTATTCCTTTGGGACATGAAAATGGAAGAAAGA  200
       |||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  -ATTGATGA-TCTGCCTCTATTCCTTTGGGACATGAAAATGAAAGAAAGA  181

seq1  AGTAGTTAATTAAACATTTATTATCTACGCAAATCATATATGGCAGTCTT  250
      ||||||  |||||||| |||||||||||||||||||||||||||||||||
seq2  AGTAGT--ATTAAACA-TTATTATCTACGCAAATCATATATGGCAGTCTT  228

seq1  GGGCTTATTTGTGCTTGGACAACCTCACTCTTTCCCTGCACAGCCATTTG  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATTTGTGCTTGGACAACCTCACTCTTTCCCTGCACAGCCATTTG  278

seq1  CCACACATGGTGACTGGGTTAAGTTCTGTTTATATTGGCTCAAAGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGGTGACTGGGTTAAGTTCTGTTTATATTGGCTCAAAGATGGA  328

seq1  TCTGGGCACTGGGGAGCATTGAGAGGGGCCTAGGTGATAGGAGGAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCACTGGGGAGCATTGAGAGGGGCCTAGGTGATAGGAGGAATGAG  378

seq1  GAAGCTAGGGCTCAGCTGCTCTGCCCTAGTGCAGGTGCTTTCCTTTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGGGCTCAGCTGCTCTGCCCTAGTGCAGGTGCTTTCCTTTAATG  428

seq1  GTTCTCCCTTCCACAGACTGGCCATTGTGCTCACAGCATCCTCTGTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCCTTCCACAGACTGGCCATTGTGCTCACAGCATCCTCTGTGTGC  478

seq1  CACCCACATTTGACTTCGCTAATATTGTAGCCTACTTCGTTCATTTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATTTGACTTCGCTAATATTGTAGCCTACTTCGTTCATTTAGCA  528

seq1  TCAAAGTAGCTTTTTGAGATGATCAGACTCAGGGTTGCATCTTTGGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGCTTTTTGAGATGATCAGACTCAGGGTTGCATCTTTGGTCCT  578

seq1  TCTCAGTGTTATACTCCATGTGTGAAAATTTCTATATTGGGTTTGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTTATACTCCATGTGTGAAAATTTCTATATTGGGTTTGATCTG  628

seq1  TTTTAAATATTCAAAATTATTTTTGTTTCGTGGTTGGTGCATTATGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATTCAAAATTATTTTTGTTTCGTGGTTGGTGCATTATGGATA  678

seq1  ATGCTAGATTCTTAGACTCATGCCATCAATTTCAACAGGTTACTGTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGATTCTTAGACTCATGCCATCAATTTCAACAGGTTACTGTGTTC  728

seq1  CCAGATATTATGAACACACAAATATCTGAGTGTACCACTCTTTAAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATTATGAACACACAAATATCTGAGTGTACCACTCTTTAAAAAGT  778

seq1  GTTTCAGAGGGAATATTTGGGGAAAGATATGTGATTAGAAAGGGCAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGGGAATATTTGGGGAAAGATATGTGATTAGAAAGGGCAATCA  828

seq1  GATCAGGAAGAGAAGGCTAGGGATGAGTGACTGGGGGAGGGCATGATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAGAGAAGGCTAGGGATGAGTGACTGGGGGAGGGCATGATTAC  878

seq1  AACATTCTATACTTTAATGAAAACACAATGAAACCCATTATTTTGTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTATACTTTAATGAAAACACAATGAAACCCATTATTTTGTAAAA  928

seq1  GTAGCAAATGCTACTACAATTTCTAAATGCATTAGTTTAATCTCTTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAATGCTACTACAATTTCTAAATGCATTAGTTTAATCTCTTGAAA  978

seq1  CTTAAACTCATCTCAAAAACATTACTATTGTTTTATGTGTGCTTTAAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCATCTCAAAAACATTACTATTGTTTTATGTGTGCTTTAAGAT  1028

seq1  TTCTGATACTGTTTTCTTAAAAGGATGTCCACTACACCAAAATCTAAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATACTGTTTTCTTAAAAGGATGTCCACTACACCAAAATCTAAGCT  1078

seq1  AGCGTCTACATTATTTCTCTTACAGGCATTGGAAGTATGTGTTTCAATGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCTACATTATTTCTCTTACAGGCATTGGAAGTATGTGTTTCAATGT  1128

seq1  TTAAGACTACTTATGCTTCTACTCAGAGGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  TTAAGACTACTTATGCTTCTACTCAGAGGAATTC  1162

seq1: chr6_18437570_18438670
seq2: B6Ng01-011J18.g_64_1155

seq1  GAATTCAACCCATTAACAATGCCTATTAAGGTTTTCTAAAATTCTTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCATTAACAATGCCTATTAAGGTTTTCTAAAATTCTTCCAC  50

seq1  TAATTTTCCAACCAACCTTTCCTCCCTCAAACCCTCCTGACATCTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCAACCAACCTTTCCTCCCTCAAACCCTCCTGACATCTTATTA  100

seq1  CCACTTTCCAAATGGGAACAAAACTCCATGGAGCCATTGATTATAGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCCAAATGGGAACAAAACTCCATGGAGCCATTGATTATAGTCAT  150

seq1  GAAGAGATGTGGCTTCTTAATTCCACCAGTGAGATTGTATTATTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGTGGCTTCTTAATTCCACCAGTGAGATTGTATTATTTTTGTT  200

seq1  AAGATACTTGAGCAGAAAGCTCACTACCTTTTATATTTTGGGATCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTTGAGCAGAAAGCTCACTACCTTTTATATTTTGGGATCTGGAT  250

seq1  ATATAGCCAAGAACTCAGGATTCTTTTGCCTCGGTCTCTAGAGTTAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCCAAGAACTCAGGATTCTTTTGCCTCGGTCTCTAGAGTTAGGAT  300

seq1  TGCAGGTACATATCACCATGCTTACCTGACGAATTTTCAGAGTGTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTACATATCACCATGCTTACCTGACGAATTTTCAGAGTGTCACTC  350

seq1  CAGGAAGGAGGGGACACTCACCCACTACTGCATCATCACCTTCATGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGAGGGGACACTCACCCACTACTGCATCATCACCTTCATGCTAA  400

seq1  CCTTCACAGATTATTTAGAGACTTTTAAAAAATAATTTAAAACTCATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACAGATTATTTAGAGACTTTTAAAAAATAATTTAAAACTCATTTC  450

seq1  AGGGAGCTACTCAGATGATTCAGTAATTAAGAACACCAGATGCTCTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTACTCAGATGATTCAGTAATTAAGAACACCAGATGCTCTTGCA  500

seq1  GAAAGCCTGGGTTTGATACATAGCACCCACATCATGGCTCAGGCAACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTGGGTTTGATACATAGCACCCACATCATGGCTCAGGCAACTCC  550

seq1  TGTTCTATGGGGATCTGATACCCTCTTCTAACATCCACAGCAACCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGGGGATCTGATACCCTCTTCTAACATCCACAGCAACCAGGCA  600

seq1  CACACAAGGCAAGAAGACATACATGCCAGCAAAACATTCTTATAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGGCAAGAAGACATACATGCCAGCAAAACATTCTTATAATAAAA  650

seq1  GATACAAAATTTAAAAAAAAAATGTTTCTACTGACTTATATTTTGTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAATTTAAAAAAAAAATGTTTCTACTGACTTATATTTTGTGAAT  700

seq1  GTAACTGCATTTTAATACTGTAATTACTTAAAACATCAAGCTTTTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGCATTTTAATACTGTAATTACTTAAAACATCAAGCTTTTTTCAT  750

seq1  TGCTATTCACTGTCTCTATGCAAAGACGGTGGCTTTAGGGGAAACTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCACTGTCTCTATGCAAAGACGGTGGCTTTAGGGGAAACTCCTA  800

seq1  AAACATGTTCAAAATATGCTAAAGCGGACAGACCCCAATGACCAAGGCAA  850
      ||||||||||||||||||||||||||||||||| ||||||||  ||||||
seq2  AAACATGTTCAAAATATGCTAAAGCGGACAGACTCCAATGACTCAGGCAA  850

seq1  CTCTTATA-GGGACGACATTTAATTGGGGCTGGTTAACAGGTTCAG-AGG  898
      |||||||| |||| |||| |||||||||||||| |||||||||||| |||
seq2  CTCTTATAGGGGATGACAATTAATTGGGGCTGGGTAACAGGTTCAGAAGG  900

seq1  TTCAGCCCTTTATCATCAAGGTGGGAAGCATGGCAGCATCCAGACAGGCA  948
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAGCTCTTTATCATCAAGGTGGGAAGCATGGCAGCATTCAGACAGGCA  950

seq1  TGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGC  998
      ||||||| || ||||||||||||||||||| ||||||||||||||||| |
seq2  TGGTGCAAGAAGAGCTGAGAGTTCTACATC-TCATCTGAAGGCTGCTA-C  998

seq1  AGAATACTGGCTTCTAGGAAGCTAGGTCTAGGGTATTAAAACCCAATCTC  1048
      |||||||||||||||||||||||| |||||||    ||||  | ||||||
seq2  AGAATACTGGCTTCTAGGAAGCTA-GTCTAGG---ATAAACTCAAATCTC  1044

seq1  ACC-TACTTCAACAAGGCCTCACCTCCAAATAGTGCTGAAGAAGTCAAGC  1097
      ||| ||||||| ||  | ||||| || | |   ||||||||||||| |||
seq2  ACCTTACTTCACCA--GGCTCACTTCTATA---TGCTGAAGAAGTC-AGC  1088

seq1  TCAG  1101
      ||||
seq2  TCAG  1092