BAC Information

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BAC

Clone NameB6Ng01-012A08
Chromosome6 (Build37)
Map Location 135,932,313 - 136,072,822
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneApold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A08.bB6Ng01-012A08.g
ACCDH847228DH847229
length956788
definitionDH847228|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A08, 5' end.DH847229|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,932,313 - 135,933,261)(136,072,035 - 136,072,822)
sequence
gaattctttttgtgtttttacttgacgagtaactagtagacatctacaca
tgcattaatagtatacaaattatgttttgaaatatgcatatgcatatatg
catcatagaatatttgggcatatgtatgtgcacacatgtatgcacagtgt
atgcaaatgtgttgtagggtatgtatgtacatgtacacatgtgtgtacag
gaaagaggtcaacctcagatgccattattcagacagccatccagtttgac
ttttgagaaagggtttgtcactggcctggaaactgctaagtaggctagac
tgcctgagcagtgagcgctgactgcatctacatcaccagtgtgtacatca
cgagagagtgtgcatcacaggtatgtgtgcctcacaggagtgtgtacatc
acaggagtatgtgtgtgcatagcaggagtgtgtgtacatcacaggagtgt
gtgtgtgcatcacaggagtgtgtttgtgtgcatcacaggagtgtgtacat
agcaagagtgtgtgtacatcacagaagtgtatgtgtgcatcacaggagtg
tgtgtgtgcatcacaggagtgtgcagcaatgctcagctttttcacgtgga
ttctcagaattagacccaggaccttacattttcaggaaaagtattttatc
aaatgagctacggtcccaccctcaagaccaattctcatcagatggctctt
ctgttgagtttgagtctttgcagtgtgaatattaactccttcacaaatct
atggcttgaaaatacatacgttctcccattcagaatgcaatcacttcttg
ttaactgtttccttttctgggaagactgtttcagttcagtgcaacccatt
tgcccatttaaaaaattttgtgatttgtgctctgaggatcatattttaaa
agaaatctttacacccagttgtggtgttggacccctataatctcagattt
tgggga
gaattccagagcacatactgttctgactgtggcaagtgatcagaagtgga
gatgcacaggtatacaggcttcggtcacagcagatctgagacagtgcttt
ctgtaggtggtgtgaggtctgcgttgctcctgtgtgtgtggatcagcaag
caaaagtctgggtttagaactcagcccgtgtcctagggttgatgaagctg
tggcttacagctgagatgtcctgtttgttttactgacgtcccatggaaga
gactgttaatctgggcacaggggaagagacgcattggtaaaggaaggcca
tggagttgcagataaacacactcaggttctaagctgagttaaaatatcct
gtaaccttgcattaagtacttaactgttctgagccttgatttcactgatc
ctaaaatgggacaatccaatcttacggattatttgagaaaatgaaataat
acacaggaaaagtagattacccaatctcctttcagatagtttatgggagt
aaacaaattaataaagcatgatttctgaccacttaattagtgtgtaattt
ctgaatttgggaaaagaacggacagaaagaggtggctggggaggtttaga
cactggcaaagaaagaacacaaggccattgtgctttgaatatgtttgacc
cctctgaaatgctcatttcagtgaaatttaagccccatttgggagatagt
agaaggtggagctcagcttggacattcaaggagccatgtcctgtctaaac
tagaggatctggctcagggaggctgcttcacagtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135932313_135933261
seq2: B6Ng01-012A08.b_45_993

seq1  GAATTCTTTTTGTGTTTTTACTTGACGAGTAACTAGTAGACATCTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTGTTTTTACTTGACGAGTAACTAGTAGACATCTACACA  50

seq1  TGCATTAATAGTATACAAATTATGTTTTGAAATATGCATATGCATATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAATAGTATACAAATTATGTTTTGAAATATGCATATGCATATATG  100

seq1  CATCATAGAATATTTGGGCATATGTATGTGCACACATGTATGCACAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGAATATTTGGGCATATGTATGTGCACACATGTATGCACAGTGT  150

seq1  ATGCAAATGTGTTGTAGGGTATGTATGTACATGTACACATGTGTGTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGTGTTGTAGGGTATGTATGTACATGTACACATGTGTGTACAG  200

seq1  GAAAGAGGTCAACCTCAGATGCCATTATTCAGACAGCCATCCAGTTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCAACCTCAGATGCCATTATTCAGACAGCCATCCAGTTTGAC  250

seq1  TTTTGAGAAAGGGTTTGTCACTGGCCTGGAAACTGCTAAGTAGGCTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAAGGGTTTGTCACTGGCCTGGAAACTGCTAAGTAGGCTAGAC  300

seq1  TGCCTGAGCAGTGAGCGCTGACTGCATCTACATCACCAGTGTGTACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGCAGTGAGCGCTGACTGCATCTACATCACCAGTGTGTACATCA  350

seq1  CGAGAGAGTGTGCATCACAGGTATGTGTGCCTCACAGGAGTGTGTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGTGTGCATCACAGGTATGTGTGCCTCACAGGAGTGTGTACATC  400

seq1  ACAGGAGTATGTGTGTGCATAGCAGGAGTGTGTGTACATCACAGGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTATGTGTGTGCATAGCAGGAGTGTGTGTACATCACAGGAGTGT  450

seq1  GTGTGTGCATCACAGGAGTGTGTTTGTGTGCATCACAGGAGTGTGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATCACAGGAGTGTGTTTGTGTGCATCACAGGAGTGTGTACAT  500

seq1  AGCAAGAGTGTGTGTACATCACAGAAGTGTATGTGTGCATCACAGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTGTGTGTACATCACAGAAGTGTATGTGTGCATCACAGGAGTG  550

seq1  TGTGTGTGCATCACAGGAGTGTGCAGCAATGCTCAGCTTTTTCACGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCATCACAGGAGTGTGCAGCAATGCTCAGCTTTTTCACGTGGA  600

seq1  TTCTCAGAATTAGACCCAGGACCTTACATTTTCAGGAAAAGTATTTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAATTAGACCCAGGACCTTACATTTTCAGGAAAAGTATTTTATC  650

seq1  AAATGAGCTACGGTCCCACCCTCAAGACCAATTCTCATCAGATGGCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTACGGTCCCACCCTCAAGACCAATTCTCATCAGATGGCTCTT  700

seq1  CTGTTGAGTTTGAGTCTTTGCAGTGTGAATATTAACTCCTTCACAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTTTGAGTCTTTGCAGTGTGAATATTAACTCCTTCACAAATCT  750

seq1  ATGGCTTGAAAATACATACGTTCTCCCATTCAGAATGCAATCACTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGAAAATACATACGTTCTCCCATTCAGAATGCAATCACTTCTTG  800

seq1  TTAACTGTTTCCTTTTCTGGGAAGACTGTTTCAGTTCAGTGCAACCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTTCCTTTTCTGGGAAGACTGTTTCAGTTCAGTGCAACCCATT  850

seq1  TGCCCATTTAAAAAATTTTGTGATTTGTGCTCTGAGGATCATATTTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTAAAAAATTTTGTGATTTGTGCTCTGAGGATCATATTTTAAA  900

seq1  AGAAATCTTTACACCCAGTTGTGGTGTTGGACCCCTATAATCTCAGATT  949
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTTACACCCAGTTGTGGTGTTGGACCCCTATAATCTCAGATT  949

seq1: chr6_136072035_136072822
seq2: B6Ng01-012A08.g_65_852 (reverse)

seq1  CCTCACTGTGAAGCAGCCTCCCTGAGCCAGATCCTCTAGTTTAGACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGTGAAGCAGCCTCCCTGAGCCAGATCCTCTAGTTTAGACAGGA  50

seq1  CATGGCTCCTTGAATGTCCAAGCTGAGCTCCACCTTCTACTATCTCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTCCTTGAATGTCCAAGCTGAGCTCCACCTTCTACTATCTCCCAA  100

seq1  ATGGGGCTTAAATTTCACTGAAATGAGCATTTCAGAGGGGTCAAACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTTAAATTTCACTGAAATGAGCATTTCAGAGGGGTCAAACATAT  150

seq1  TCAAAGCACAATGGCCTTGTGTTCTTTCTTTGCCAGTGTCTAAACCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCACAATGGCCTTGTGTTCTTTCTTTGCCAGTGTCTAAACCTCCC  200

seq1  CAGCCACCTCTTTCTGTCCGTTCTTTTCCCAAATTCAGAAATTACACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCTCTTTCTGTCCGTTCTTTTCCCAAATTCAGAAATTACACACT  250

seq1  AATTAAGTGGTCAGAAATCATGCTTTATTAATTTGTTTACTCCCATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGTGGTCAGAAATCATGCTTTATTAATTTGTTTACTCCCATAAAC  300

seq1  TATCTGAAAGGAGATTGGGTAATCTACTTTTCCTGTGTATTATTTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAAGGAGATTGGGTAATCTACTTTTCCTGTGTATTATTTCATTT  350

seq1  TCTCAAATAATCCGTAAGATTGGATTGTCCCATTTTAGGATCAGTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATAATCCGTAAGATTGGATTGTCCCATTTTAGGATCAGTGAAAT  400

seq1  CAAGGCTCAGAACAGTTAAGTACTTAATGCAAGGTTACAGGATATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCAGAACAGTTAAGTACTTAATGCAAGGTTACAGGATATTTTAA  450

seq1  CTCAGCTTAGAACCTGAGTGTGTTTATCTGCAACTCCATGGCCTTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTAGAACCTGAGTGTGTTTATCTGCAACTCCATGGCCTTCCTTT  500

seq1  ACCAATGCGTCTCTTCCCCTGTGCCCAGATTAACAGTCTCTTCCATGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCGTCTCTTCCCCTGTGCCCAGATTAACAGTCTCTTCCATGGGA  550

seq1  CGTCAGTAAAACAAACAGGACATCTCAGCTGTAAGCCACAGCTTCATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTAAAACAAACAGGACATCTCAGCTGTAAGCCACAGCTTCATCAA  600

seq1  CCCTAGGACACGGGCTGAGTTCTAAACCCAGACTTTTGCTTGCTGATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGACACGGGCTGAGTTCTAAACCCAGACTTTTGCTTGCTGATCCA  650

seq1  CACACACAGGAGCAACGCAGACCTCACACCACCTACAGAAAGCACTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGGAGCAACGCAGACCTCACACCACCTACAGAAAGCACTGTCT  700

seq1  CAGATCTGCTGTGACCGAAGCCTGTATACCTGTGCATCTCCACTTCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGCTGTGACCGAAGCCTGTATACCTGTGCATCTCCACTTCTGAT  750

seq1  CACTTGCCACAGTCAGAACAGTATGTGCTCTGGAATTC  788
      ||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCACAGTCAGAACAGTATGTGCTCTGGAATTC  788