BAC Information

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BAC

Clone NameB6Ng01-012C04
Chromosome6 (Build37)14 (Build37)
Map Location 18,835,442 - 18,835,968117,883,204 - 117,884,288
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012C04.bB6Ng01-012C04.g
ACCDH847308DH847309
length9221,067
definitionDH847308|Mus musculus domesticus DNA, BAC clone: B6Ng01-012C04, 5' end.DH847309|Mus musculus domesticus DNA, BAC clone: B6Ng01-012C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,442 - 18,835,968)(117,883,204 - 117,884,288)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatcgttgagaagactttttgcaatcctaggttttacgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtatattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttattatac
agatctttcacctccttagtta
gaattccaaagttgtcttacgtgctgttaaagaacctgtatgtgaatatt
tcatagacacaccaccgaagacagttgcaggaaacttgggaagaaaggga
taatctgtaggtggatacgggagcgtagtgatccgtccaatacatcttta
actagactgaaaacagtctgtacaagagaactccgtgctcagcaaggcac
ggtgatgcacatctataatccagcacttgtgaggctgacggaagactatc
aaggccatcctgggctccagagatagcaaggatcttcactaaaaatcaag
ggctagggatttagttcaatggcagaatgcttgcatggaaggtgggaagg
taagacgaagggatggagggaagaagggaaaatcggtgactgtgaatctt
tagtttataaactgactgacacaacctccctgactgcctgaaggatggag
tgttaaagtcacacgtaacttccttctcagcatgtagaaaagtacatgtt
tgcacacagaaatattttctatctgagactaatgtaattgttgtatgaat
gaatgtaattagctcgaacaatgacactggccactagaacaacttgccca
cacttgtggctctcactcaggaacataatcaagaaccattctagcatgca
tatcacatgccttatgtaaagccactcagaaggcctagaaacatgattta
tcttctgtgttaatccttcaaattcccttaacttccctcctctttagtga
ttacagacactgagtaatataatatgtgagactgggactgtggttccaag
ctggtcatttcctagccattagcgccgtggaaggtatcagtcagttcgtt
caattttatacagcctggctatgtaacatgagccatttttaaagatacag
gaataatgtggaatacacatacaattttaatctagtaaaatatttcccta
aagtacagagcacacccattgtattgacactgacaagcatgctgaattct
tctgctatgtgcctgtgcagtctctaggttcaatacctctgggtattact
ttggcaatgtcactctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835442_18835968
seq2: B6Ng01-012C04.b_43_570 (reverse)

seq1  CCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  50

seq1  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  100

seq1  ACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCT  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGTGAATCGATCCATACTTATCT  150

seq1  CCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  200

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  250

seq1  TGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTG  299
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  TGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  300

seq1  AGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  349
      || | |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  350

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  399
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAA  400

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  450

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  500

seq1  ATGGGGCTCAGAACTGAACAAAGAATTC  527
      ||||||||||||||||||||||||||||
seq2  ATGGGGCTCAGAACTGAACAAAGAATTC  528

seq1: chr14_117883204_117884288
seq2: B6Ng01-012C04.g_65_1131

seq1  GAATTCCAAAGTTGTCTTACGTGCTGTTAAAGAACCTGTATGTGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTTGTCTTACGTGCTGTTAAAGAACCTGTATGTGAATATT  50

seq1  TCATAGACACACCACCGAAGACAGTTGCAGGAAACTTGGGAAGAAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGACACACCACCGAAGACAGTTGCAGGAAACTTGGGAAGAAAGGGA  100

seq1  TAATCTGTAGGTGGATACGGGAGCGTAGTGATCCGTCCAATACATCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTAGGTGGATACGGGAGCGTAGTGATCCGTCCAATACATCTTTA  150

seq1  ACTAGACTGAAAACAGTCTGTACAAGAGAACTCCGTGCTCAGCAAGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTGAAAACAGTCTGTACAAGAGAACTCCGTGCTCAGCAAGGCAC  200

seq1  GGTGATGCACATCTATAATCCAGCACTTGTGAGGCTGACGGAAGACTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCACATCTATAATCCAGCACTTGTGAGGCTGACGGAAGACTATC  250

seq1  AAGGCCATCCTGGGCTCCAGAGATAGCAAGGATCTTCACTAAAAATCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATCCTGGGCTCCAGAGATAGCAAGGATCTTCACTAAAAATCAAG  300

seq1  GGCTAGGGATTTAGTTCAATGGCAGAATGCTTGCATGGAAGGTGGGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGGATTTAGTTCAATGGCAGAATGCTTGCATGGAAGGTGGGAAGG  350

seq1  TAAGACGAAGGGATGGAGGGAAGAAGGGAAAATCGGTGACTGTGAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGAAGGGATGGAGGGAAGAAGGGAAAATCGGTGACTGTGAATCTT  400

seq1  TAGTTTATAAACTGACTGACACAACCTCCCTGACTGCCTGAAGGATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATAAACTGACTGACACAACCTCCCTGACTGCCTGAAGGATGGAG  450

seq1  TGTTAAAGTCACACGTAACTTCCTTCTCAGCATGTAGAAAAGTACATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGTCACACGTAACTTCCTTCTCAGCATGTAGAAAAGTACATGTT  500

seq1  TGCACACAGAAATATTTTCTATCTGAGACTAATGTAATTGTTGTATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAGAAATATTTTCTATCTGAGACTAATGTAATTGTTGTATGAAT  550

seq1  GAATGTAATTAGCTCGAACAATGACACTGGCCACTAGAACAACTTGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAATTAGCTCGAACAATGACACTGGCCACTAGAACAACTTGCCCA  600

seq1  CACTTGTGGCTCTCACTCAGGAACATAATCAAGAACCATTCTAGCATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTGGCTCTCACTCAGGAACATAATCAAGAACCATTCTAGCATGCA  650

seq1  TATCACATGCCTTATGTAAAGCCACTCAGAAGGCCTAGAAACATGATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATGCCTTATGTAAAGCCACTCAGAAGGCCTAGAAACATGATTTA  700

seq1  TCTTCTGTGTTAATCCTTCAAATTCCCTTAACTTCCCTCCTCTTTAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGTTAATCCTTCAAATTCCCTTAACTTCCCTCCTCTTTAGTGA  750

seq1  TTACAGACACTGAGTAATATAATATGTGAGACTGGGACTGTGGTTCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACACTGAGTAATATAATATGTGAGACTGGGACTGTGGTTCCAAG  800

seq1  CTGGTCATTTCCTAGCCATTAGCGCCGTGGAAGGTATCAGTCAGTTCGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATTTCCTAGCCATTAGCGCCGTGGAAGGTATCAGTCAGTTCGTT  850

seq1  CAATTTTATACAGCCTGGGCTATGTAACATGAGCCATTTTTAAAGATACA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATTTTATACAGCCT-GGCTATGTAACATGAGCCATTTTTAAAGATACA  899

seq1  GGAATAATGTGGAATACCACATACAATTTTAATCTAGTAAAATATTTCCC  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAATAATGTGGAATA-CACATACAATTTTAATCTAGTAAAATATTTCCC  948

seq1  TAAAGTACAGAGCACAACCCATTGGTATTGACAACCTGACAAGCATGCTG  1000
      ||||||||||||||| ||||||| |||||||||  |||||||||||||||
seq2  TAAAGTACAGAGCAC-ACCCATT-GTATTGACA--CTGACAAGCATGCTG  994

seq1  GATTCCTCTGGCTATTGTGCCCTGTGGCAAGTCTCTTAGGTTTCAATACC  1050
       |||| ||| |||| |||| ||||||   |||||| |||| ||||||| |
seq2  AATTCTTCT-GCTA-TGTG-CCTGTG--CAGTCTC-TAGG-TTCAATA-C  1036

seq1  CTCTGGGTATTACCTTTGGGCAAAATGTCACTCTG  1085
      |||||||||||| ||||||    ||||||||||||
seq2  CTCTGGGTATTA-CTTTGG---CAATGTCACTCTG  1067