BAC Information

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BAC

Clone NameB6Ng01-012E17
Chromosome6 (Build37)
Map Location 40,106,941 - 40,176,271
singlet/doubletdoublet
Overlap geneEG434008
Upstream geneA630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneAgk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012E17.bB6Ng01-012E17.g
ACCDH847428DH847429
length634711
definitionDH847428|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E17, 5' end.DH847429|Mus musculus domesticus DNA, BAC clone: B6Ng01-012E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,175,638 - 40,176,271)(40,106,941 - 40,107,571)
sequence
gaattcagtgcaaagtagggaaatgagcacttatgaaattcttgtttggg
ggatgggtgcttttgcaatatattatctcatttcatctccacaataatcc
caacagagttggaagtgctacctcagttttacaaacgagaaacgcaggct
cagagattggcaaccaacttggggcgagggtagagatttctacccagagc
taaatgactcccgaaatactgcagtttcagtaacagcccagatggagctc
gaggagtggaggcaaatgaacattgtgaggaaagcgatggcagatgttga
caattgatggaaaggtgaaggtgaaaaggggccaggaaaaatgacagagg
aacagccggagtcttcaggtgtcaaggaggagtggctttccttgggggga
agggacagaatgggaggtcacatgcatggggtgactaaggtaagccaagt
gttttcatgtgtttaaaaatcaaagagcactgtgtaatttgtgcagagag
aaagacaagcctacttgaaagcatgcctgggattctagcagggtaggaat
gaagtgcacgaggcctgcgcgcagaggactgtttcatagtcaccagagtt
accctcgtgtgtgtgtgtgtgtgagtgtgtgtgt
gaattcaaggacagtcgggtctacagtgtgagtggcaagacagccaaggc
taaatagaaaaaccctgattttgaagaagaggaggaagaggaggaggagg
aaggagaaagtagctttattccatgaatctttatttctcaacactcatta
aaaaacttctttttgcagtagataaatggtgagtaacacagagaccacaa
ctgatcaaggaatagagagtagcaggctgctgaatactcaacccttagtt
ggatacacacacacacacacacacaccacaacccttcatcccagtgatcc
cagactcagggatcattttagaatagggtgttggaaagggcataagagaa
agatgtgataactgtctcctggacatagcaggaaaattgtgagctcacac
aggctataacattgttcataagacctgtacaagctcaagccagacaaaag
cccaataagaactggaaggtagaacaaaatcccatccctagccaagagct
attgaaaattgatagctattgagaaagtcagttttgttgttgttattgtt
gttggtggtggtttgagctgtgttacctcttataagttgaccacattcca
gtggtcttcactccctcattcaaaacagcacaaattaattagatttgatg
ggtgttcaaaaacaacaaaaaaacaggacacaaagttggttgggtaggga
aaggggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40175638_40176271
seq2: B6Ng01-012E17.b_46_679 (reverse)

seq1  ACACACACACTCACACACACACACACACGAGGGTAACTCTGGTGACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTCACACACACACACACACGAGGGTAACTCTGGTGACTATG  50

seq1  AAACAGTCCTCTGCGCGCAGGCCTCGTGCACTTCATTCCTACCCTGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCCTCTGCGCGCAGGCCTCGTGCACTTCATTCCTACCCTGCTAG  100

seq1  AATCCCAGGCATGCTTTCAAGTAGGCTTGTCTTTCTCTCTGCACAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGGCATGCTTTCAAGTAGGCTTGTCTTTCTCTCTGCACAAATTA  150

seq1  CACAGTGCTCTTTGATTTTTAAACACATGAAAACACTTGGCTTACCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCTCTTTGATTTTTAAACACATGAAAACACTTGGCTTACCTTAG  200

seq1  TCACCCCATGCATGTGACCTCCCATTCTGTCCCTTCCCCCCAAGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCATGCATGTGACCTCCCATTCTGTCCCTTCCCCCCAAGGAAAGC  250

seq1  CACTCCTCCTTGACACCTGAAGACTCCGGCTGTTCCTCTGTCATTTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCCTTGACACCTGAAGACTCCGGCTGTTCCTCTGTCATTTTTCC  300

seq1  TGGCCCCTTTTCACCTTCACCTTTCCATCAATTGTCAACATCTGCCATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTTTTCACCTTCACCTTTCCATCAATTGTCAACATCTGCCATCG  350

seq1  CTTTCCTCACAATGTTCATTTGCCTCCACTCCTCGAGCTCCATCTGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCACAATGTTCATTTGCCTCCACTCCTCGAGCTCCATCTGGGCT  400

seq1  GTTACTGAAACTGCAGTATTTCGGGAGTCATTTAGCTCTGGGTAGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAAACTGCAGTATTTCGGGAGTCATTTAGCTCTGGGTAGAAATC  450

seq1  TCTACCCTCGCCCCAAGTTGGTTGCCAATCTCTGAGCCTGCGTTTCTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCGCCCCAAGTTGGTTGCCAATCTCTGAGCCTGCGTTTCTCGT  500

seq1  TTGTAAAACTGAGGTAGCACTTCCAACTCTGTTGGGATTATTGTGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAACTGAGGTAGCACTTCCAACTCTGTTGGGATTATTGTGGAGAT  550

seq1  GAAATGAGATAATATATTGCAAAAGCACCCATCCCCCAAACAAGAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGATAATATATTGCAAAAGCACCCATCCCCCAAACAAGAATTTC  600

seq1  ATAAGTGCTCATTTCCCTACTTTGCACTGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCTCATTTCCCTACTTTGCACTGAATTC  634

seq1: chr6_40106941_40107571
seq2: B6Ng01-012E17.g_64_694

seq1  GAATTCAAGGACAGTCGGGTCTACAGTGTGAGTGGCAAGACAGCCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGTCGGGTCTACAGTGTGAGTGGCAAGACAGCCAAGGC  50

seq1  TAAATAGAAAAACCCTGATTTTGAAGAAGAGGAGGAAGAGGAGGAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAAAACCCTGATTTTGAAGAAGAGGAGGAAGAGGAGGAGGAGG  100

seq1  AAGGAGAAAGTAGCTTTATTCCATGAATCTTTATTTCTCAACACTCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAAGTAGCTTTATTCCATGAATCTTTATTTCTCAACACTCATTA  150

seq1  AAAAACTTCTTTTTGCAGTAGATAAATGGTGAGTAACACAGAGACCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCTTTTTGCAGTAGATAAATGGTGAGTAACACAGAGACCACAA  200

seq1  CTGATCAAGGAATAGAGAGTAGCAGGCTGCTGAATACTCAACCCTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAAGGAATAGAGAGTAGCAGGCTGCTGAATACTCAACCCTTAGTT  250

seq1  GGATACACACACACACACACACACACCACAACCCTTCATCCCAGTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACACACACACACACACACACCACAACCCTTCATCCCAGTGATCC  300

seq1  CAGACTCAGGGATCATTTTAGAATAGGGTGTTGGAAAGGGCATAAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGGGATCATTTTAGAATAGGGTGTTGGAAAGGGCATAAGAGAA  350

seq1  AGATGTGATAACTGTCTCCTGGACATAGCAGGAAAATTGTGAGCTCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATAACTGTCTCCTGGACATAGCAGGAAAATTGTGAGCTCACAC  400

seq1  AGGCTATAACATTGTTCATAAGACCTGTACAAGCTCAAGCCAGACAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATAACATTGTTCATAAGACCTGTACAAGCTCAAGCCAGACAAAAG  450

seq1  CCCAATAAGAACTGGAAGGTAGAACAAAATCCCATCCCTAGCCAAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAGAACTGGAAGGTAGAACAAAATCCCATCCCTAGCCAAGAGCT  500

seq1  ATTGAAAATTGATAGCTATTGAGAAAGTCAGTTTTGTTGTTGTTATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATTGATAGCTATTGAGAAAGTCAGTTTTGTTGTTGTTATTGTT  550

seq1  GTTGGTGGTGGTTTGAACTGTGTTACCTCTTATAAGTTGACCACATTCCA  600
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGGTGGTGGTTTGAGCTGTGTTACCTCTTATAAGTTGACCACATTCCA  600

seq1  GTGGTCTTCACTCCCTCATTCAAAACAGCAC  631
      |||||||||||||||||||||||||||||||
seq2  GTGGTCTTCACTCCCTCATTCAAAACAGCAC  631