BAC Information

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BAC

Clone NameB6Ng01-012I14
Chromosome6 (Build37)
Map Location 71,692,027 - 71,868,181
singlet/doubletdoublet
Overlap geneReep1, Mrpl35, Immt, Ptcd3, Rpo1-4
Upstream geneRpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034
Downstream geneLOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I14.bB6Ng01-012I14.g
ACCDH847603DH847604
length1,1281,080
definitionDH847603|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I14, 5' end.DH847604|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,692,027 - 71,693,157)(71,867,092 - 71,868,181)
sequence
gaattcaatgccattcttggctacatagtgagttggagtccaaccagcct
gcaatacaagagatcctgtctcaaaaacattttttttttctagttgaaac
atatacttcccccatctctttttcttccttttctgtttagtactagacat
tgagcccagggcctggaacgtgccaaacacgtattgtaccactaaccaca
ccctgagctccaacagaagtctgtttgctggggaacttccaaatggaaag
aaatacataggcatttttccttctgaaaaaccagaaccacttaaaaatgt
ctacattgcctctgagcttgttctcaaatgtcacttccctagtgggacat
agctaggttatacaagcgctcagcagaactttgccccttgtgagatcaga
cactgaaacactctccatacttatcaatcatctcccactgtgtacacggt
tggcgttttgtttgttgtttgctttctgtgaatttagcagtagacagact
tggtaagccttgtaagtcgactcactgggaatctaccttttctgcttggc
tcatttcacttagtgtaatgtcctcttggttgtagcttgtgtctgaattt
ccttcccttttcagactgaatacattaataccttctatacacagtctaga
gtttgcttattcatttatccattgatgggcatttgtattgcttccatttc
ttggctgttgtgaattgtggtgctatgagcacaggtgtgtaactatctct
gcgaggactatttttggtggctcagctgcctgctactttgttaacttgga
tgatgatgatgatgatggtgatgggaaatcttgccatgtacctcaggctg
acctacaactcatagtcctcctgcctcagctgcccgagcaatgggcttac
agatgtgtaccccatgtccagttagcagatattaaccgatgaggaattca
gcaatagaacccatcagactagcctcactagttatatttccacattgtct
aggctcaatatgcataaggatggggtccctgtttattgagcgaggagatg
gaagggactggaattcaatcatgggcagatgtttctgacctgatggtatg
aacctctgctgcaggaagctgcagtgat
gaattctttcacagacgcctccagggagagagaagacagcagggatttaa
gagaaagtccagagtaggggatggagtggaggtcgaggcagacagtgctc
tcaacacagctgcttgctggatgctatacttaaactagtgccatctaacc
ctctagtcagccccgctatagccatgaaggtgaggaactgaacgtcatgg
gactcgtaagagacagagctgggactgaaacctaagtctacccttggaag
cgaggaacttgtgcagatgacgggatagagaaactgtggtcactgtacta
aaagcagatcattacacaggtagacgctggtcacttacatgtgtgccctg
ggaccccaagaggttgttctgcagaattttgcttgtgtattcttctaact
cttcttgaatttcgaaggcggaaggatctccagtttcttccagaaactga
aagagaggaaaattactgtgttactacagtaaagtaagtgtctggtgagc
accatggctgggactggccttttcaaggacggagatcaatccaggaaaga
aatccagagttactgtgctacatttttaaatcagtgaagcggggctaggg
atgccattggtggtggagcagagcactcagagtaaatgtgagctgggggt
cactcactattcttatgcacctaggtgggactctaagtgtccttattcct
tatgcatctctgtggaaagcactatagccctaaattcattttgtagtttg
ttaattttatgcttttcattttgaagcccccaaatgatgcaggaacagaa
atggacacctagaatgagtacaacgatgattatcaaatgggacatcacca
cttcccggccccagcaaggcgaggatccaaaggaaataacacttgtacat
ttgtacaagcagaccagggctttaacctgaattatgcaggttcagactgg
gagcaccacccgagtgagcaagagccccctctctgaagaaggtggccgtg
cccttgcatacacgcagcaatcaaaagtagtcttctagacaaggaagagg
aaaggtttctacatatagtggacatcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71692027_71693157
seq2: B6Ng01-012I14.b_44_1171

seq1  GAATTCAATGCCATTCTTGGCTACATAGTGAGTTGGAGTCCAACCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCATTCTTGGCTACATAGTGAGTTGGAGTCCAACCAGCCT  50

seq1  GCAATACAAGAGATCCTGTCTCAAAAACATTTTTTTTTTCTAGTTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACAAGAGATCCTGTCTCAAAAACATTTTTTTTTTCTAGTTGAAAC  100

seq1  ATATACTTCCCCCATCTCTTTTTCTTCCTTTTCTGTTTAGTACTAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTCCCCCATCTCTTTTTCTTCCTTTTCTGTTTAGTACTAGACAT  150

seq1  TGAGCCCAGGGCCTGGAACGTGCCAAACACGTATTGTACCACTAACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGGGCCTGGAACGTGCCAAACACGTATTGTACCACTAACCACA  200

seq1  CCCTGAGCTCCAACAGAAGTCTGTTTGCTGGGGAACTTCCAAATGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCTCCAACAGAAGTCTGTTTGCTGGGGAACTTCCAAATGGAAAG  250

seq1  AAATACATAGGCATTTTTCCTTCTGAAAAACCAGAACCACTTAAAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAGGCATTTTTCCTTCTGAAAAACCAGAACCACTTAAAAATGT  300

seq1  CTACATTGCCTCTGAGCTTGTTCTCAAATGTCACTTCCCTAGTGGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTGCCTCTGAGCTTGTTCTCAAATGTCACTTCCCTAGTGGGACAT  350

seq1  AGCTAGGTTATACAAGCGCTCAGCAGAACTTTGCCCCTTGTGAGATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTTATACAAGCGCTCAGCAGAACTTTGCCCCTTGTGAGATCAGA  400

seq1  CACTGAAACACTCTCCATACTTATCAATCATCTCCCACTGTGTACACGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAACACTCTCCATACTTATCAATCATCTCCCACTGTGTACACGGT  450

seq1  TGGCGTTTTGTTTGTTGTTTGCTTTCTGTGAATTTAGCAGTAGACAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTTTGTTTGTTGTTTGCTTTCTGTGAATTTAGCAGTAGACAGACT  500

seq1  TGGTAAGCCTTGTAAGTCGACTCACTGGGAATCTACCTTTTCTGCTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGCCTTGTAAGTCGACTCACTGGGAATCTACCTTTTCTGCTTGGC  550

seq1  TCATTTCACTTAGTGTAATGTCCTCTTGGTTGTAGCTTGTGTCTGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTTAGTGTAATGTCCTCTTGGTTGTAGCTTGTGTCTGAATTT  600

seq1  CCTTCCCTTTTCAGACTGAATACATTAATACCTTCTATACACAGTCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTTTTCAGACTGAATACATTAATACCTTCTATACACAGTCTAGA  650

seq1  GTTTGCTTATTCATTTATCCATTGATGGGCATTTGTATTGCTTCCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTATTCATTTATCCATTGATGGGCATTTGTATTGCTTCCATTTC  700

seq1  TTGGCTGTTGTGAATTGTGGTGCTATGAGCACAGGTGTGTAACTATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTTGTGAATTGTGGTGCTATGAGCACAGGTGTGTAACTATCTCT  750

seq1  GCGAGGACTATTTTTGGTGGCTCAGCTGCCTGCTACTTTGTTAACTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGACTATTTTTGGTGGCTCAGCTGCCTGCTACTTTGTTAACTTGGA  800

seq1  TGATGATGATGATGATGGTGATGGGAAATCTTGCCATGTACCTCAGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGATGATGATGGTGATGGGAAATCTTGCCATGTACCTCAGGCTG  850

seq1  ACCTACAACTCATAGTCCTCCTGCCTCAGCTGCCCGAGCAATGGGCTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAACTCATAGTCCTCCTGCCTCAGCTGCCCGAGCAATGGGCTTAC  900

seq1  AGATGTGTACCCCATGTCCAGTTAGCAGATATTAACCGATGAGGAATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTACCCCATGTCCAGTTAGCAGATATTAACCGATGAGGAATTCA  950

seq1  GCAATAGAACCCATCAGACTAGCCTCACTTAGTAATATTTCCACATTGTC  1000
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GCAATAGAACCCATCAGACTAGCCTCAC-TAGTTATATTTCCACATTGTC  999

seq1  ATAGGCTC-ATATGCATAAAGGATGGGGTCCCTGTTTA-TGAGCGAGGAG  1048
       ||||||| |||||||| |||||||||||||||||||| |||||||||||
seq2  -TAGGCTCAATATGCAT-AAGGATGGGGTCCCTGTTTATTGAGCGAGGAG  1047

seq1  ATGGAAGGGACTGG-ATTCATACATGGGCAGATGTCTCTGA-CTGATGGT  1096
      |||||||||||||| |||||  ||||||||||||| ||||| ||||||||
seq2  ATGGAAGGGACTGGAATTCAATCATGGGCAGATGTTTCTGACCTGATGGT  1097

seq1  ATGAAACTCTGCTGCAAGGGAAGCTGCAAAGTGAT  1131
      ||||| ||||||||||  |||||||||  ||||||
seq2  ATGAACCTCTGCTGCA--GGAAGCTGC--AGTGAT  1128

seq1: chr6_71867092_71868181
seq2: B6Ng01-012I14.g_66_1145 (reverse)

seq1  CCTTGATGT-CACTATATGTTAGAAACCCTCTCCTCTTCCCTTGTCCTAG  49
      ||||||||| ||||||||| |||||| ||| ||||||| |||||| ||||
seq2  CCTTGATGTCCACTATATG-TAGAAA-CCTTTCCTCTT-CCTTGT-CTAG  46

seq1  GAGACTTACTTTTGATTGCTGGCGTGTATGCAAGGGCACGGCCACCTTCC  99
       |||| |||||||||||||| ||||||||||||||||||||||||||| |
seq2  AAGAC-TACTTTTGATTGCT-GCGTGTATGCAAGGGCACGGCCACCTT-C  93

seq1  TTCAGAGAGGGGGCTTCCTGCTTCACTCGGGTGGTGCTCCCAGTCTGAAC  149
      |||||||||||||| || ||| ||||||||||||||||||||||||||| 
seq2  TTCAGAGAGGGGGC-TCTTGC-TCACTCGGGTGGTGCTCCCAGTCTGAA-  140

seq1  CCTGCATAATTCAGGTTTAAAGCCCTGGTCTGCTTGTACAATTGTACAAG  199
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CCTGCATAATTCAGG-TTAAAGCCCTGGTCTGCTTGTACAAATGTACAAG  189

seq1  TGTTATTTCCTTTGGATCCTCGCCTTGCTGGGGCCGGGAAGTGGTGATGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTCCTTTGGATCCTCGCCTTGCTGGGGCCGGGAAGTGGTGATGT  239

seq1  CCCATTTGATAATCATCGTTGTACTCATTCTAGGTGTCCATTTCTGTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGATAATCATCGTTGTACTCATTCTAGGTGTCCATTTCTGTTCC  289

seq1  TGCATCATTTGGGGGCTTCAAAATGAAAAGCATAAAATTAACAAACTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTTGGGGGCTTCAAAATGAAAAGCATAAAATTAACAAACTACA  339

seq1  AAATGAATTTAGGGCTATAGTGCTTTCCACAGAGATGCATAAGGAATAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATTTAGGGCTATAGTGCTTTCCACAGAGATGCATAAGGAATAAG  389

seq1  GACACTTAGAGTCCCACCTAGGTGCATAAGAATAGTGAGTGACCCCCAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTAGAGTCCCACCTAGGTGCATAAGAATAGTGAGTGACCCCCAGC  439

seq1  TCACATTTACTCTGAGTGCTCTGCTCCACCACCAATGGCATCCCTAGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTACTCTGAGTGCTCTGCTCCACCACCAATGGCATCCCTAGCCC  489

seq1  CGCTTCACTGATTTAAAAATGTAGCACAGTAACTCTGGATTTCTTTCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCACTGATTTAAAAATGTAGCACAGTAACTCTGGATTTCTTTCCTG  539

seq1  GATTGATCTCCGTCCTTGAAAAGGCCAGTCCCAGCCATGGTGCTCACCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATCTCCGTCCTTGAAAAGGCCAGTCCCAGCCATGGTGCTCACCAG  589

seq1  ACACTTACTTTACTGTAGTAACACAGTAATTTTCCTCTCTTTCAGTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACTTTACTGTAGTAACACAGTAATTTTCCTCTCTTTCAGTTTCT  639

seq1  GGAAGAAACTGGAGATCCTTCCGCCTTCGAAATTCAAGAAGAGTTAGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAACTGGAGATCCTTCCGCCTTCGAAATTCAAGAAGAGTTAGAAG  689

seq1  AATACACAAGCAAAATTCTGCAGAACAACCTCTTGGGGTCCCAGGGCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACAAGCAAAATTCTGCAGAACAACCTCTTGGGGTCCCAGGGCACA  739

seq1  CATGTAAGTGACCAGCGTCTACCTGTGTAATGATCTGCTTTTAGTACAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGTGACCAGCGTCTACCTGTGTAATGATCTGCTTTTAGTACAGT  789

seq1  GACCACAGTTTCTCTATCCCGTCATCTGCACAAGTTCCTCGCTTCCAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGTTTCTCTATCCCGTCATCTGCACAAGTTCCTCGCTTCCAAGG  839

seq1  GTAGACTTAGGTTTCAGTCCCAGCTCTGTCTCTTACGAGTCCCATGACGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTAGGTTTCAGTCCCAGCTCTGTCTCTTACGAGTCCCATGACGT  889

seq1  TCAGTTCCTCACCTTCATGGCTATAGCGGGGCTGACTAGAGGGTTAGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTCACCTTCATGGCTATAGCGGGGCTGACTAGAGGGTTAGATG  939

seq1  GCACTAGTTTAAGTATAGCATCCAGCAAGCAGCTGTGTTGAGAGCACTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGTTTAAGTATAGCATCCAGCAAGCAGCTGTGTTGAGAGCACTGT  989

seq1  CTGCCTCGACCTCCACTCCATCCCCTACTCTGGACTTTCTCTTAAATCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCGACCTCCACTCCATCCCCTACTCTGGACTTTCTCTTAAATCCC  1039

seq1  TGCTGTCTTCTCTCTCCCTGGAGGCGTCTGTGAAAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTCTCTCTCCCTGGAGGCGTCTGTGAAAGAATTC  1080