BAC Information

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BAC

Clone NameB6Ng01-012M04
Chromosome6 (Build37)
Map Location 9,477,380 - 9,621,643
singlet/doubletdoublet
Overlap genenone
Upstream geneGlcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012M04.bB6Ng01-012M04.g
ACCDH847759DH847760
length761972
definitionDH847759|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M04, 5' end.DH847760|Mus musculus domesticus DNA, BAC clone: B6Ng01-012M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,620,883 - 9,621,643)(9,477,380 - 9,478,136)
sequence
gaattcatcaatttggaagatgatactgttatagtgaaagtatctttaaa
agtgattatttagcttcatcaatcctaaaactctggcaacatgaaattac
tcttatctaggatttatcatttagatgaattatctccagttggtgttctt
ctgtggtgtgtttttcttctaggaaactctttgattaagaaaaatgagat
aagattaaaagacaaaatttgttctcattagctcaaataatgtcttcccc
atttttccaaataaatattgcatgcactgtgggtcagtttactctccata
tctttctcaatctttttcttctttgtctggagaagagaaaataagtgatt
cgagttcccaggaggaaaaagctctataagattccatctactgctcaaag
gaacggaagcttaattctctgtcacttaagaagagtcctgttctgattca
tatgcagctagagacatgagctccggggggggattggttagttcataatg
ttgttccacctataggattgcagatccctttagctccttgggtaccttct
ctatctcctccattgggggccctgtgatccatccaatagctgactaggag
catccacttctgtgtttgctagaccccggcatagtctcacaagagacagc
tctatctgggtcctttcagcaaagtcttgctagtgtacgcaatggtgtca
gcatttggaggctgattatgggatggatccctggatatggcagtgggtgg
gggagcgtgtg

gaattcacagatacataaacttgttgtagtctctgtgtgatcgatataag
cttttagaatctttctaagtgaaagttacagttgtaaattcctattgcag
tttatgaatacttcaaagctcttttctccacatatatggggatgtggctt
tgcctttcccagtcccatagaagagagaaggatgaacacaaagagaggga
aaaaataaaacattgcttagtcatggataacacaaaggaggcaatgcatt
tttcttttaaaattgaaaatagttttttttaacacaatattttatgatta
cagtttccgctcacccaccccctcccagggtctctccaccttgccaacta
ccgaatccatattatttcttgccctctctcattagaaaacaaacaggaat
tatataggggactaatatccaacatatataaagaactcaagaaggtggac
ttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaa
agaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactatcggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacaggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacctaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacatg
gagtactactcagctattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9620883_9621643
seq2: B6Ng01-012M04.b_46_806 (reverse)

seq1  CACACGCTCCCCCACCCACTGCCATATCCAGGGATCCATCCCATAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTCCCCCACCCACTGCCATATCCAGGGATCCATCCCATAATCAG  50

seq1  CCTCCAAATGCTGACACCATTGCGTACACTAGCAAGACTTTGCTGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATGCTGACACCATTGCGTACACTAGCAAGACTTTGCTGAAAGG  100

seq1  ACCCAGATAGAGCTGTCTCTTGTGAGACTATGCCGGGGTCTAGCAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATAGAGCTGTCTCTTGTGAGACTATGCCGGGGTCTAGCAAACAC  150

seq1  AGAAGTGGATGCTCCTAGTCAGCTATTGGATGGATCACAGGGCCCCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGATGCTCCTAGTCAGCTATTGGATGGATCACAGGGCCCCCAAT  200

seq1  GGAGGAGATAGAGAAGGTACCCAAGGAGCTAAAGGGATCTGCAATCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATAGAGAAGGTACCCAAGGAGCTAAAGGGATCTGCAATCCTAT  250

seq1  AGGTGGAACAACATTATGAACTAACCAATCCCCCCCCGGAGCTCATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACAACATTATGAACTAACCAATCCCCCCCCGGAGCTCATGTCT  300

seq1  CTAGCTGCATATGAATCAGAACAGGACTCTTCTTAAGTGACAGAGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGAATCAGAACAGGACTCTTCTTAAGTGACAGAGAATTA  350

seq1  AGCTTCCGTTCCTTTGAGCAGTAGATGGAATCTTATAGAGCTTTTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCGTTCCTTTGAGCAGTAGATGGAATCTTATAGAGCTTTTTCCTC  400

seq1  CTGGGAACTCGAATCACTTATTTTCTCTTCTCCAGACAAAGAAGAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACTCGAATCACTTATTTTCTCTTCTCCAGACAAAGAAGAAAAAG  450

seq1  ATTGAGAAAGATATGGAGAGTAAACTGACCCACAGTGCATGCAATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAGATATGGAGAGTAAACTGACCCACAGTGCATGCAATATTTA  500

seq1  TTTGGAAAAATGGGGAAGACATTATTTGAGCTAATGAGAACAAATTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAATGGGGAAGACATTATTTGAGCTAATGAGAACAAATTTTGT  550

seq1  CTTTTAATCTTATCTCATTTTTCTTAATCAAAGAGTTTCCTAGAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATCTTATCTCATTTTTCTTAATCAAAGAGTTTCCTAGAAGAAAA  600

seq1  ACACACCACAGAAGAACACCAACTGGAGATAATTCATCTAAATGATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACAGAAGAACACCAACTGGAGATAATTCATCTAAATGATAAAT  650

seq1  CCTAGATAAGAGTAATTTCATGTTGCCAGAGTTTTAGGATTGATGAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATAAGAGTAATTTCATGTTGCCAGAGTTTTAGGATTGATGAAGCT  700

seq1  AAATAATCACTTTTAAAGATACTTTCACTATAACAGTATCATCTTCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCACTTTTAAAGATACTTTCACTATAACAGTATCATCTTCCAAA  750

seq1  TTGATGAATTC  761
      |||||||||||
seq2  TTGATGAATTC  761


seq1: chr6_9477380_9478136
seq2: B6Ng01-012M04.g_67_823

seq1  GAATTCACAGATACATAAACTTGTTGTAGTCTCTGTGTGATCGATATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATACATAAACTTGTTGTAGTCTCTGTGTGATCGATATAAG  50

seq1  CTTTTAGAATCTTTCTAAGTGAAAGTTACAGTTGTAAATTCCTATTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAATCTTTCTAAGTGAAAGTTACAGTTGTAAATTCCTATTGCAG  100

seq1  TTTATGAATACTTCAAAGCTCTTTTCTCCACATATATGGGGATGTGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATACTTCAAAGCTCTTTTCTCCACATATATGGGGATGTGGCTT  150

seq1  TGCCTTTCCCAGTCCCATAGAAGAGAGAAGGATGAACACAAAGAGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCCAGTCCCATAGAAGAGAGAAGGATGAACACAAAGAGAGGGA  200

seq1  AAAAATAAAACATTGCTTAGTCATGGATAACACAAAGGAGGCAATGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAACATTGCTTAGTCATGGATAACACAAAGGAGGCAATGCATT  250

seq1  TTTCTTTTAAAATTGAAAATAGTTTTTTTTAACACAATATTTTATGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAAAATTGAAAATAGTTTTTTTTAACACAATATTTTATGATTA  300

seq1  CAGTTTCCGCTCACCCACCCCCTCCCAGGGTCTCTCCACCTTGCCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCGCTCACCCACCCCCTCCCAGGGTCTCTCCACCTTGCCAACTA  350

seq1  CCGAATCCATATTATTTCTTGCCCTCTCTCATTAGAAAACAAACAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATCCATATTATTTCTTGCCCTCTCTCATTAGAAAACAAACAGGAAT  400

seq1  TATATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC  450

seq1  TTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAA  500

seq1  AGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAAT  550

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA  600

seq1  TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG  650

seq1  CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT  700

seq1  GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC  750

seq1  AGAAAAC  757
      |||||||
seq2  AGAAAAC  757


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