BAC Information

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BAC

Clone NameB6Ng01-013D04
Chromosome6 (Build37)
Map Location 33,071,424 - 33,213,496
singlet/doubletdoublet
Overlap geneGm1401, Exoc4
Upstream genePlxna4, Chchd3, LOC100039118
Downstream geneLrguk, Slc35b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013D04.bB6Ng01-013D04.g
ACCDH848078DH848079
length1,136532
definitionDH848078|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D04, 5' end.DH848079|Mus musculus domesticus DNA, BAC clone: B6Ng01-013D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,071,424 - 33,072,948)(33,212,961 - 33,213,496)
sequence
gaattctttgagttgagagagcatgagtttatttatttcataggaaaaaa
acaaaacaaaacaaaaacacctgaggcacgctaagctaaataccatcccc
aaagtcatagaaagaaaaaaactaaattagatattagaactcatgtctgc
cgtccctaaagtccttaacagctcttttattaaagttggtcttaatgatt
atctggaggacatgcttaaaagaagctgtttgggttgagagcatcacagg
gccaacttgattttttacttgaatttccaatcattgtcccatccaatgtc
ttcatttgttgcacacataggaatgcatgatgggaacatagtgaaggagg
aacggtttctgtggtagtaaaggagatgttttctgtgacaaagacttaat
ccagacaatgttatcacaattagggcatatcctgaaggcattctaaactc
tcagctgacaatgaggtccaaatgtggagtgccggctggcattcttcatc
aattatcttctgaatcacgcagtttgacatgtccagtctaggaatcacca
ccataaagtctactgagacttttgcaagggaaagtctcccacatttgtct
ttgtaacttggtacatcttctaattcaatgcttattccagagcagattca
caaaagtgtctgttgagagaattaattgggagggagtaaacatggatccg
gtttaggagataacctcctaagataaagacaatcaaatcaataaggagtg
ttgtccaggttggtatacccaattccaattcttcatggctcagatgatca
ttgctgaaaatggccggtcagtcctccacattagaacctttgtcagctgt
aaccccactttatgagaagtctcttcatgtagaccagatgtttcagatcc
tcaagtagatctgagtgtagtaaggatgccttcctgtgacctgtttcatg
tctaggatcagtctctgtcatgagcactatggtcctgagctcagtcacgt
gagggaagctttcagagatgctcacccaaatacttcagtatctcatcatg
tagattggcatggggctagcaccccagttggatcagcgctcaccagtaga
aagacctgggactatacgtacatgtcaactcttgtt
taactgcctaggctgggctccttagtccaccgaatttactacccagagga
cttcagctactgaatcttattttgttcatctataaaatgaaaagaagata
cattccttataggatggaggtgttaagcacaatcaaacaaagcctcaaac
accactatcagtcaacaaacgttgtccgtagttattagcgatcattgcta
caagaacggtttcgctttggaggggtatttatctttgtttgtgtttgttg
gttggttggttttgaggaagttgtttgtggttttcattttctaagacagt
ggcttgctatggagctcaggctggcctaccaatcactgtacagaccaagc
tgaccactactatcctcctgcctctacctcccaagtgttggcgttacaga
caagcaccaccacaccgggcactacaatgcagttttagtttaaaaaaaaa
aatcttcgttctggtggacagtccatgttgatgagcaagatttcacatct
ctacttataaaaatgttaatactaagcccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33071424_33072948
seq2: B6Ng01-013D04.b_45_1180

seq1  GAATTCTTTGAGTTGAGAGAGCATGAGTTTATTTATTTCATAGGAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGTTGAGAGAGCATGAGTTTATTTATTTCATAGGAAAAAA  50

seq1  ACAAAACAAAACAAAAACACCTGAGGCACGCTAAGCTAAATACCATCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAAAACACCTGAGGCACGCTAAGCTAAATACCATCCCC  100

seq1  AAAGTCATAGAAAGAAAAAAACTAAATTAGATATTAGAACTCATGTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATAGAAAGAAAAAAACTAAATTAGATATTAGAACTCATGTCTGC  150

seq1  CGTCCCTAAAGTCCTTAACAGCTCTTTTATTAAAGTTGGTCTTAATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCTAAAGTCCTTAACAGCTCTTTTATTAAAGTTGGTCTTAATGATT  200

seq1  ATCTGGAGGACATGCTTAAAAGAAGCTGTTTGGGTTGAGAGCATCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGACATGCTTAAAAGAAGCTGTTTGGGTTGAGAGCATCACAGG  250

seq1  GCCAACTTGATTTTTTACTTGAATTTCCAATCATTGTCCCATCCAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTGATTTTTTACTTGAATTTCCAATCATTGTCCCATCCAATGTC  300

seq1  TTCATTTGTTGCACACATAGGAATGCATGATGGGAACATAGTGAAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTTGCACACATAGGAATGCATGATGGGAACATAGTGAAGGAGG  350

seq1  AACGGTTTCTGTGGTAGTAAAGGAGATGTTTTCTGTGACAAAGACTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTTTCTGTGGTAGTAAAGGAGATGTTTTCTGTGACAAAGACTTAAT  400

seq1  CCAGACAATGTTATCACAATTAGGGCATATCCTGAAGGCATTCTAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAATGTTATCACAATTAGGGCATATCCTGAAGGCATTCTAAACTC  450

seq1  TCAGCTGACAATGAGGTCCAAATGTGGAGTGCCGGCTGGCATTCTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGACAATGAGGTCCAAATGTGGAGTGCCGGCTGGCATTCTTCATC  500

seq1  AATTATCTTCTGAATCACGCAGTTTGACATGTCCAGTCTAGGAATCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTTCTGAATCACGCAGTTTGACATGTCCAGTCTAGGAATCACCA  550

seq1  CCATAAAGTCTACTGAGACTTTTGCAAGGGAAAGTCTCCCACATTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGTCTACTGAGACTTTTGCAAGGGAAAGTCTCCCACATTTGTCT  600

seq1  TTGTAACTTGGTACATCTTCTAATTCAATGCTTATTCCAGAGCAGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTTGGTACATCTTCTAATTCAATGCTTATTCCAGAGCAGATTCA  650

seq1  CAAAAGTGTCTGTTGAGAGAATTAATTGGGAGGGAGTAAACATGGATCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGTCTGTTGAGAGAATTAATTGGGAGGGAGTAAACATGGATCCG  700

seq1  GTTTAGGAGATAACCTTCTAAGATAAAGACAATCAAATCAATAAGGAGTG  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTAGGAGATAACCTCCTAAGATAAAGACAATCAAATCAATAAGGAGTG  750

seq1  TTGTCCAGGTTGGTATACCCAATTCCAATTCTTCATGGCTCAGATGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGGTTGGTATACCCAATTCCAATTCTTCATGGCTCAGATGATCA  800

seq1  TTGCTGAAAATGGCCGGTCAGTCCTCCACATTAGAACCTTTGTCAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAAATGGCCGGTCAGTCCTCCACATTAGAACCTTTGTCAGCTGT  850

seq1  AACCCCACTTTATGAGAAGTCTCTTCATGTAGACCAGATGTTTCAGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACTTTATGAGAAGTCTCTTCATGTAGACCAGATGTTTCAGATCC  900

seq1  TCAAGTAGATCTGAGTGTAGTAAGGATGCCTTCCTGTGACCTGTTTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TCAAGTAGATCTGAGTGTAGTAAGGATGCCTTCCTGTGACCTGTTT--CA  948

seq1  TGTCTAGGATCAGTCTCTGTTCATGAGCAACTATGGTCCTGAGGCTCCAG  1000
      ||||||||||||||||||| |||||||| ||||||||||||| ||| |||
seq2  TGTCTAGGATCAGTCTCTG-TCATGAGC-ACTATGGTCCTGA-GCT-CAG  994

seq1  TCACCGTGAGGGGAAGGCTTTCAGAGATGCTCACCCAAATACTTTCAGTA  1050
      ||| ||||||||  | |||||||||||||||||||||||||| |||||| 
seq2  TCA-CGTGAGGG--AAGCTTTCAGAGATGCTCACCCAAATAC-TTCAGT-  1039

seq1  ATCTTCATCATTGTAAGAATGGCATGGGGGTTAGCACCCCAGTTTGAGTC  1100
      ||| |||||| ||| ||| |||||| |||| ||||||||||||| || ||
seq2  ATC-TCATCA-TGT-AGATTGGCAT-GGGGCTAGCACCCCAGTTGGA-TC  1084

seq1  AGCGCTCACCAGTAAGAATGACATGGGGACCAATACCCCAGCATGGCCCA  1150
      ||||||||||||| |||| ||| ||||    | ||  |   ||||   ||
seq2  AGCGCTCACCAGT-AGAAAGACCTGGG----ACTATACGTACATG--TCA  1127

seq1  GCTCTTGTTACATAGTTGGAATCCTAGGGGATCTGCCCTCAGTTGCTTAG  1200
       ||||||||                                         
seq2  ACTCTTGTT-----------------------------------------  1136

seq1  TATATTCCAGAGCAGTTTGAGTTAAACCAGTCTGAGCTCTGCAAACACAG  1250
                                                        
seq2  --------------------------------------------------  1136

seq1  GTTTCTTAGCAACAACGAGGACACATTACCATGGGTCAGGTCCCCTCCTT  1300
                                                        
seq2  --------------------------------------------------  1136

seq1  GTCAAATCAACACTTGACGCTCTGTCTGGCTTCCTGTTGAGAGTGAGCAT  1350
                                                        
seq2  --------------------------------------------------  1136

seq1  GCCCTCTTTACTAGACTCAGGAGTGTGCAGCCATCAAAAACAATACTGGT  1400
                                                        
seq2  --------------------------------------------------  1136

seq1  ACATCAACACCTCAGCTTATGTCTTTGCATCTTCCACAGCTTGTTGGCTA  1450
                                                        
seq2  --------------------------------------------------  1136

seq1  TTTATAGCAGGTATACTGCCCGAAGATGGTTTTGAGGGGCTGGAGGCACT  1500
                                                        
seq2  --------------------------------------------------  1136

seq1  AGGCAGTCTTTGTCTAACTCTTGTT  1525
                               
seq2  -------------------------  1136

seq1: chr6_33212961_33213496
seq2: B6Ng01-013D04.g_64_600 (reverse)

seq1  CTGGGCTTAGTATTAACA-TTTTATAAGTAGAGATGTGAAATCTTGCTCA  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGGGCTTAGTATTAACATTTTTATAAGTAGAGATGTGAAATCTTGCTCA  50

seq1  TCAGCATGGACTGTCCACCAGAACGAAGATTTTTTTTTTTAAACTAAAAC  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGGACTGTCCACCAGAACGAAGATTTTTTTTTTTAAACTAAAAC  100

seq1  TGCATTGTAGTGCCCAGTGTGGTGGTGCTTGTCTGTAACGCCAACACTTG  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCATTGTAGTGCCCGGTGTGGTGGTGCTTGTCTGTAACGCCAACACTTG  150

seq1  GGAGGTAGAGGCAGGAGGATAGTAGTGGTCAGCTTGGTCTGTACAGTGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGAGGCAGGAGGATAGTAGTGGTCAGCTTGGTCTGTACAGTGAT  200

seq1  TGGTAGGCCAGCCTGAGCTCCATAGCAAGCCACTGTCTTAGAAAATGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCCAGCCTGAGCTCCATAGCAAGCCACTGTCTTAGAAAATGAAA  250

seq1  ACCACAAACAACTTCCTCAAAACCAACCAACCAACAAACACAAACAAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACAACTTCCTCAAAACCAACCAACCAACAAACACAAACAAAGA  300

seq1  TAAATACCCCTCCAAAGCGAAACCGTTCTTGTAGCAATGATCGCTAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCCCTCCAAAGCGAAACCGTTCTTGTAGCAATGATCGCTAATAA  350

seq1  CTACGGACAACGTTTGTTGACTGATAGTGGTGTTTGAGGCTTTGTTTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGACAACGTTTGTTGACTGATAGTGGTGTTTGAGGCTTTGTTTGAT  400

seq1  TGTGCTTAACACCTCCATCCTATAAGGAATGTATCTTCTTTTCATTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAACACCTCCATCCTATAAGGAATGTATCTTCTTTTCATTTTAT  450

seq1  AGATGAACAAAATAAGATTCAGTAGCTGAAGTCCTCTGGGTAGTAAATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACAAAATAAGATTCAGTAGCTGAAGTCCTCTGGGTAGTAAATTC  500

seq1  GGTGGACTAAGGAGCCCAGCCTAGGCAGTTAGAATTC  536
      |||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTAAGGAGCCCAGCCTAGGCAGTTAGAATTC  537