BAC Information

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BAC

Clone NameB6Ng01-013N24
Chromosome6 (Build37)
Map Location 108,111,363 - 108,112,409
singlet/doubletsinglet
Overlap geneSumf1
Upstream geneLrrn1, Setmar, LOC100043718
Downstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N24.bB6Ng01-013N24.g
ACCDH848579DH848580
length1,1951,039
definitionDH848579|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N24, 5' end.DH848580|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaccatgaaaaagcaatctacagcaaaccag
tagccaacatcaaagtaaatggtgagaagctggaagcaatcctactaaaa
tcagggactagacaaggctgtccactctctccctacgtattcaatattgt
acttgaagtcctagccaaagcaattcgacaacaaaaggagatcaagggca
tacaaattggaaaagaagaagtcaaaatatcacttttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaacgcctaaacc
tgataaacagcttcgatgaagtagctgggtataaacttaacacgaacaag
tcaatggcctttctctacacaaaggataaacaggctgagaaagaaattag
ggaaacaacacccttctcaattgtcacaaataatataaaataccttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggatgggcaggatcaatatagtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattcgaactcaattcttc
acgaattagaaagggcaatatacaaatctatctggaataacaaaaaacct
agcatagcaaaaactctcctcaaagataaaagaacctttgggggaatcac
catgcctgacctaaagctttactacagagcaatagtgataaaaactgcat
tgtactgatatagagaaagacaagtagatcaatggaatagaattaaagac
ccagaaatgaacacacacacctatggtctcttgatctttgacaaggagct
aaaaccatccagtggaaaaaagacagcatctttaacaaatgttgctggca
caactggtggtagcatgtagagatggatgatcattctatctcctgtacta
gtcaatctagtggatcaagaactccacataaataagaccctgaacctaca
gagaaaatggggaaggcctcgaagattggtcacgggaaatcctgaataga
acagcattgctctctgcgtgatcgaatagcaaatgatctcaattgcaacc
tctgtggcaataacctcatcatgactatcctcacacgacgttgga
gaattctaaacatcatacaatcacagaaactatcatcagctggctgaagg
ttttaaagaaaccaaaattccagaattctcactgcagccctccatgtgga
ggtaatttctgtgttgtagtcatagttactcttctgctattgtgctaaga
cactgtgactgatgctacttataaaagatagagtttattggggcctatag
tttcacaggatgggttcatgatcatcgtgatagggagcagggcagcagga
tggcaaatggagttggcttttgaaacctcaaagccctcttccttctccaa
gttcctccctccaggccacacctcctcatcttttctaagtagttccacaa
accagggaccaaaccttcaagtatatgtacccaggaggtcgtcctcattc
acagcacgacagctggcctgtataagtggttccgtcaacttgctggctgt
gcatgggatgcagacttttcatgagtactgtcacgttgtttaaagatggg
acatgctctcacctatttgcacatcctgttaaagtttttttttttttttt
agatacttttttttcttactccttttaagcagtcacccaaatcagtacca
ttccctgtgtctctctccatctcaactggaaatgagtaaaatcagtccag
tgtcagctactgtcggctgcacgaattccttgagctgttcttacagggtg
cctgcaatgctccaccctgccagggtttctattcttcctgtgaagacctg
aagtgtgatgggtgctaattgtgagtataacgttccagtatggggggttt
cagtaagagctgaaacaaacatttgttggtttcaccctttatttcataaa
ttatttgtgaaatctgttgaaaaggcatgtattgttctctttaagtgcag
tctgtgagttcatcaaagtcctgacttaggataatcagagtcatgcatct
gactactactccattgtgatggacggctttgtttccgcctttattagagc
tcgttcgatgttcagtgtgggtacaggtgtctgaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108111363_108112409
seq2: B6Ng01-013N24.g_68_1106 (reverse)

seq1  TGGCTTCAGCAACCTGTACCCACACTGAACATCAGAACGAGGCTCTAATA  50
      |||||||||  |||||||||||||||||||||| |||||| |||||||||
seq2  TGGCTTCAGACACCTGTACCCACACTGAACATC-GAACGA-GCTCTAATA  48

seq1  AAGGGCGGAAACAAAGCCAT-CATCACAATGGGAAGGTAGGTAGGTCAGA  99
      || ||||||||||||||| | |||||||||||    ||| ||| ||||||
seq2  AA-GGCGGAAACAAAGCCGTCCATCACAATGG---AGTA-GTA-GTCAGA  92

seq1  TGCATGACCTCTGATTAATCCTAAGTCAGGACCTTGATGACTTCACAGAC  149
      ||||||| |||||||| ||||||||||||||| |||||||  ||||||||
seq2  TGCATGA-CTCTGATT-ATCCTAAGTCAGGACTTTGATGAACTCACAGAC  140

seq1  TGCACTT-AAGAGAACAATACATGCCTTTTCAAACAGATTTCACAAAT-A  197
      ||||||| ||||||||||||||||||||||| |||||||||||||||| |
seq2  TGCACTTAAAGAGAACAATACATGCCTTTTC-AACAGATTTCACAAATAA  189

seq1  TTTATGAAATATAGGGTGAAACCAACAAATGTTTGTTTCAGCTCTTACTG  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAATAAAGGGTGAAACCAACAAATGTTTGTTTCAGCTCTTACTG  239

seq1  AAACCCCCCATACTGGAACGTTATACTCACAATTAGCACCCATCACACTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCCATACTGGAACGTTATACTCACAATTAGCACCCATCACACTT  289

seq1  CAGGTCTTCACAGGAAGAATAGAAACCCTGGCAGGGTGGAGCATTGCAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCACAGGAAGAATAGAAACCCTGGCAGGGTGGAGCATTGCAGG  339

seq1  CACCCTGTAAGAACAGCTCAAGGAATTCGTGCAGCCGACAGTAGCTGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTAAGAACAGCTCAAGGAATTCGTGCAGCCGACAGTAGCTGACA  389

seq1  CTGGACTGATTTTACTCATTTCCAGTTGAGATGGAGAGAGACACAGGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGATTTTACTCATTTCCAGTTGAGATGGAGAGAGACACAGGGAA  439

seq1  TGGTACTGATTTGGGTGACTGCTTAAAAGGAGTAAGAAAAAAAAGTATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGATTTGGGTGACTGCTTAAAAGGAGTAAGAAAAAAAAGTATCT  489

seq1  AAAAAAAAAAAAAAAACTTTAACAGGATGTGCAAATAGGTGAGAGCATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACTTTAACAGGATGTGCAAATAGGTGAGAGCATGT  539

seq1  CCCATCTTTAAACAACGTGACAGTACTCATGAAAAGTCTGCATCCCATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTAAACAACGTGACAGTACTCATGAAAAGTCTGCATCCCATGC  589

seq1  ACAGCCAGCAAGTTGACGGAACCACTTATACAGGCCAGCTGTCGTGCTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGCAAGTTGACGGAACCACTTATACAGGCCAGCTGTCGTGCTGT  639

seq1  GAATGAGGACGACCTCCTGGGTACATATACTTGAAGGTTTGGTCCCTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGACGACCTCCTGGGTACATATACTTGAAGGTTTGGTCCCTGGT  689

seq1  TTGTGGAACTACTTAGAAAAGATGAGGAGGTGTGGCCTGGAGGGAGGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAACTACTTAGAAAAGATGAGGAGGTGTGGCCTGGAGGGAGGAAC  739

seq1  TTGGAGAAGGAAGAGGGCTTTGAGGTTTCAAAAGCCAACTCCATTTGCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAGGAAGAGGGCTTTGAGGTTTCAAAAGCCAACTCCATTTGCCA  789

seq1  TCCTGCTGCCCTGCTCCCTATCACGATGATCATGAACCCATCCTGTGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGCCCTGCTCCCTATCACGATGATCATGAACCCATCCTGTGAAA  839

seq1  CTATAGGCCCCAATAAACTCTATCTTTTATAAGTAGCATCAGTCACAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGCCCCAATAAACTCTATCTTTTATAAGTAGCATCAGTCACAGTG  889

seq1  TCTTAGCACAATAGCAGAAGAGTAACTATGACTACAACACAGAAATTACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCACAATAGCAGAAGAGTAACTATGACTACAACACAGAAATTACC  939

seq1  TCCACATGGAGGGCTGCAGTGAGAATTCTGGAATTTTGGTTTCTTTAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGGAGGGCTGCAGTGAGAATTCTGGAATTTTGGTTTCTTTAAAA  989

seq1  CCTTCAGCCAGCTGATGATAGTTTCTGTGATTGTATGATGTTTAGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCCAGCTGATGATAGTTTCTGTGATTGTATGATGTTTAGAATTC  1039