BAC Information

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BAC

Clone NameB6Ng01-013O21
Chromosome6 (Build37)
Map Location 54,487,047 - 54,592,014
singlet/doubletdoublet
Overlap geneScrn1, Fkbp14, Plekha8
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3
Downstream geneLOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013O21.bB6Ng01-013O21.g
ACCDH848621DH848622
length1,1211,123
definitionDH848621|Mus musculus domesticus DNA, BAC clone: B6Ng01-013O21, 5' end.DH848622|Mus musculus domesticus DNA, BAC clone: B6Ng01-013O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,590,868 - 54,592,014)(54,487,047 - 54,488,173)
sequence
gaattctgtaaactagaattcaaatgggaatttggctcttcagccttgta
agatctgggttcttcaggcatgtcctaggactctgttctttgaaacagca
tgtcatgtgacttcaatacagaggtgatctagatcacatttggaagctac
ctggctcttttgctgaagagttaatgaaacaggcaaaataaataaatcaa
taaataaaaataaaatcaccagaaacaagaaattccacaaatgtgagcag
acctccctactgtaagctttacttgtgaagtaggattaaatatcctcttt
aaagtcgctgttctgctatgatgttcaattcagataacacataggaaatg
tactgcattggcaaagagtggtatgtgtcacccaaatgacttatccttcc
tgtctattctgttctcaagcatgggctgaggtcattctcttgagccactg
tcccacctgacaacaggcatggcagtccatgtcaatgttttcctacaact
gcccaaatgttttcactacacagccctttccatcagcagaggaagggaga
aaggatccactcaggaaagtgtaggaatagcaaactcttacacagcaagt
ccttcaacaaaggggcttacactccctccaatgcccagtcaacatctaag
ctattttaaacactggctttatacaatagtcctgcatactgcttcggttt
gggtggcccattaaaactagtaactgaaacagaacaatacaaatgtgaac
ccaacaaatccatctgtcaattttgctcttactgcctgctattcaagtct
gggacagcgatgatctggtttccagtacgcctgttgaaatatttagcacc
ttgatttttaaacacatgaaacacatatgcattaaacaattctaaataaa
gcactaggacttcctcatgtccatctcccaaggaaagctgagagtatcaa
agctgttgctgaaattactaggcacacacactttagagactttattccct
ggagttaggaggtgctgtcctgtgctgtcccaccacctcatcaattcagc
ccgtgattctcataacgtgtcagatgccagcttgctttctaaccgggagg
taagctgagtctctgcatgcc
gaattcaaagggactgcaggtttaagacaagaaatggcctctgtcaggaa
gtaagataggcaaagcagctcgaggccaaatagaaagacgagagaaactt
aaatggacacaagaagcaggggaaacccctcaccctgggatctagcttgc
cttctgagagcttagagaattcagcacagctgctaaggccaaaatgacct
gagcgctttcctagaagcatctccagcaagaatattcaagacagcaaatg
aggagggcagagaggtggctctgtggttaagggcaccggcttctctctca
aaggacatgggttcaattcccagcaatcacatcacggctcaccaccggcc
cacacctgtttataactctacttccagagcatctaatgtctcctgctcgc
catggccgccaggcaagcacgtgggacacagacgtatatacaggcaaaac
acctacacacataagataaaaagaaatagcaaacgacccgtgcttcctga
agccaagaacgtttgtatctcaggctccatcgaattagctctcctcccgc
atttatccccaagccctaacaccactcctttgaaaaatgcaattacattt
acaaagagaaattattgatataaaaaaaccacatcgtctcatatcgttcc
ctcaatttgaaatttttaattttaaccattgtttaatcacaggcgtggtc
agaggcttatctcctgggtgatttctagatcctaacaagtttgataattg
atattaactgttgtggtcctcaaacatgctccactgctattttaatatgt
atatttgaaaatgtatctgtataaggagtaatgtcaccacgtaggccgcc
tttacagcaaatgctataaattacactggaatttctgactttcatctggc
aagaggcttcaatcagaattcctccccgtattccctttggttttcatttc
tgtcttgcctcagagcatttacatcatatacttactgctctatgactggg
aaggatacgggacacacacaaatagtgaccatcatcaagatgaattcagg
acatggtcacagggccttgtgtgttccatacacacgatcttgtgaccctc
tctggatagcttaccgggcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54590868_54592014
seq2: B6Ng01-013O21.b_47_1167 (reverse)

seq1  GGCATGCAGAGGGACCTCAGCCTTTACCTCCCCGCTATGGAAAAGCAGCT  50
      |||||||||||    ||||||  ||||||||| | ||  ||||   ||||
seq2  GGCATGCAGAG---ACTCAGC--TTACCTCCCGGTTA--GAAAGCAAGCT  43

seq1  GGCCATACTGGACACGTTATATGAGATCCACGGGCTGGAATCTGATGAGG  100
      || ||| || |||||||  |||||||  |||||||| |||| ||||||||
seq2  GG-CAT-CT-GACACGT--TATGAGAATCACGGGCT-GAAT-TGATGAGG  86

seq1  TGGTGTGACAGCCACAGGACAGCACCTCCTAACTTCAGGGAATAAAGTCT  150
      ||||| ||||| |||||||||||||||||||||| |||||||||||||||
seq2  TGGTGGGACAG-CACAGGACAGCACCTCCTAACTCCAGGGAATAAAGTCT  135

seq1  GCTAAAGTGTTGTGTTGCCCTAGTTAATTTCCAGCAACAGCTTTGATACT  200
       |||||||| |||||   ||||| |||||| |||||||||||||||||||
seq2  -CTAAAGTG-TGTGT--GCCTAG-TAATTT-CAGCAACAGCTTTGATACT  179

seq1  CTCCAGCCTTTCCTTGGGGAGATGGACATGAGGAAGTCCTAGTGCTTTTA  250
      || ||| |||||||| ||||||||||||||||||||||||||||| ||||
seq2  CT-CAG-CTTTCCTT-GGGAGATGGACATGAGGAAGTCCTAGTGC-TTTA  225

seq1  TTTAGAATTGTTTTAATGCATATGTGTTTCATGTGTTTAAAAATCAAGGT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTG-TTTAATGCATATGTGTTTCATGTGTTTAAAAATCAAGGT  274

seq1  GCTAAATATTTCAACAGGCCTACTGGAAACCAGATCATCGCTGTCCCAGA  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTAAATATTTCAACAGGCGTACTGGAAACCAGATCATCGCTGTCCCAGA  324

seq1  CTTGAATAGCAGGCAGTAAGAGCAAAATTGACAGATGGATTTGTTGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAGCAGGCAGTAAGAGCAAAATTGACAGATGGATTTGTTGGGTT  374

seq1  CACATTTGTATTGTTCTGTTTCAGTTACTAGTTTTAATGGGCCACCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGTATTGTTCTGTTTCAGTTACTAGTTTTAATGGGCCACCCAAA  424

seq1  CCGAAGCAGTATGCAGGACTATTGTATAAAGCCAGTGTTTAAAATAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGCAGTATGCAGGACTATTGTATAAAGCCAGTGTTTAAAATAGCTT  474

seq1  AGATGTTGACTGGGCATTGGAGGGAGTGTAAGCCCCTTTGTTGAAGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGACTGGGCATTGGAGGGAGTGTAAGCCCCTTTGTTGAAGGACT  524

seq1  TGCTGTGTAAGAGTTTGCTATTCCTACACTTTCCTGAGTGGATCCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTAAGAGTTTGCTATTCCTACACTTTCCTGAGTGGATCCTTTCT  574

seq1  CCCTTCCTCTGCTGATGGAAAGGGCTGTGTAGTGAAAACATTTGGGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTGCTGATGGAAAGGGCTGTGTAGTGAAAACATTTGGGCAGT  624

seq1  TGTAGGAAAACATTGACATGGACTGCCATGCCTGTTGTCAGGTGGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAAAACATTGACATGGACTGCCATGCCTGTTGTCAGGTGGGACAG  674

seq1  TGGCTCAAGAGAATGACCTCAGCCCATGCTTGAGAACAGAATAGACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAGAGAATGACCTCAGCCCATGCTTGAGAACAGAATAGACAGGA  724

seq1  AGGATAAGTCATTTGGGTGACACATACCACTCTTTGCCAATGCAGTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAGTCATTTGGGTGACACATACCACTCTTTGCCAATGCAGTACAT  774

seq1  TTCCTATGTGTTATCTGAATTGAACATCATAGCAGAACAGCGACTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGTGTTATCTGAATTGAACATCATAGCAGAACAGCGACTTTAAA  824

seq1  GAGGATATTTAATCCTACTTCACAAGTAAAGCTTACAGTAGGGAGGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATATTTAATCCTACTTCACAAGTAAAGCTTACAGTAGGGAGGTCTG  874

seq1  CTCACATTTGTGGAATTTCTTGTTTCTGGTGATTTTATTTTTATTTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTGTGGAATTTCTTGTTTCTGGTGATTTTATTTTTATTTATTG  924

seq1  ATTTATTTATTTTGCCTGTTTCATTAACTCTTCAGCAAAAGAGCCAGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTTGCCTGTTTCATTAACTCTTCAGCAAAAGAGCCAGGTA  974

seq1  GCTTCCAAATGTGATCTAGATCACCTCTGTATTGAAGTCACATGACATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAATGTGATCTAGATCACCTCTGTATTGAAGTCACATGACATGC  1024

seq1  TGTTTCAAAGAACAGAGTCCTAGGACATGCCTGAAGAACCCAGATCTTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAAGAACAGAGTCCTAGGACATGCCTGAAGAACCCAGATCTTAC  1074

seq1  AAGGCTGAAGAGCCAAATTCCCATTTGAATTCTAGTTTACAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAAGAGCCAAATTCCCATTTGAATTCTAGTTTACAGAATTC  1121

seq1: chr6_54487047_54488173
seq2: B6Ng01-013O21.g_68_1190

seq1  GAATTCAAAGGGACTGCAGGTTTAAGACAAGAAATGGCCTCTGTCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGACTGCAGGTTTAAGACAAGAAATGGCCTCTGTCAGGAA  50

seq1  GTAAGATAGGCAAAGCAGCTCGAGGCCAAATAGAAAGACGAGAGAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAGGCAAAGCAGCTCGAGGCCAAATAGAAAGACGAGAGAAACTT  100

seq1  AAATGGACACAAGAAGCAGGGGAAACCCCTCACCCTGGGATCTAGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACACAAGAAGCAGGGGAAACCCCTCACCCTGGGATCTAGCTTGC  150

seq1  CTTCTGAGAGCTTAGAGAATTCAGCACAGCTGCTAAGGCCAAAATGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAGCTTAGAGAATTCAGCACAGCTGCTAAGGCCAAAATGACCT  200

seq1  GAGCGCTTTCCTAGAAGCATCTCCAGCAAGAATATTCAAGACAGCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTTTCCTAGAAGCATCTCCAGCAAGAATATTCAAGACAGCAAATG  250

seq1  AGGAGGGCAGAGAGGTGGCTCTGTGGTTAAGGGCACCGGCTTCTCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAGAGAGGTGGCTCTGTGGTTAAGGGCACCGGCTTCTCTCTCA  300

seq1  AAGGACATGGGTTCAATTCCCAGCAATCACATCACGGCTCACCACCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATGGGTTCAATTCCCAGCAATCACATCACGGCTCACCACCGGCC  350

seq1  CACACCTGTTTATAACTCTACTTCCAGAGCATCTAATGTCTCCTGCTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTTTATAACTCTACTTCCAGAGCATCTAATGTCTCCTGCTCGC  400

seq1  CATGGCCGCCAGGCAAGCACGTGGGACACAGACGTATATACAGGCAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCGCCAGGCAAGCACGTGGGACACAGACGTATATACAGGCAAAAC  450

seq1  ACCTACACACATAAGATAAAAAGAAATAGCAAACGACCCGTGCTTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACACATAAGATAAAAAGAAATAGCAAACGACCCGTGCTTCCTGA  500

seq1  AGCCAAGAACGTTTGTATCTCAGGCTCCATCGAATTAGCTCTCCTCCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAACGTTTGTATCTCAGGCTCCATCGAATTAGCTCTCCTCCCGC  550

seq1  ATTTATCCCCAAGCCCTAACACCACTCCTTTGAAAAATGCAATTACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCCCAAGCCCTAACACCACTCCTTTGAAAAATGCAATTACATTT  600

seq1  ACAAAGAGAAATTATTGATATAAAAAAACCACATCGTCTCATATCGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAATTATTGATATAAAAAAACCACATCGTCTCATATCGTTCC  650

seq1  CTCAATTTGAAATTTTTAATTTTAACCATTGTTTAATCACAGGCGTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTGAAATTTTTAATTTTAACCATTGTTTAATCACAGGCGTGGTC  700

seq1  AGAGGCTTATCTCCTGGGTGATTTCTAGATCCTAACAAGTTTGATAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTATCTCCTGGGTGATTTCTAGATCCTAACAAGTTTGATAATTG  750

seq1  ATATTAACTGTTGTGGTCCTCAAACATGCTCCACTGCTATTTTAATATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACTGTTGTGGTCCTCAAACATGCTCCACTGCTATTTTAATATGT  800

seq1  ATATTTG-AAATGTATCTGTATAAGGAGTAATGTCACCACGTAGGCCGCC  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAAATGTATCTGTATAAGGAGTAATGTCACCACGTAGGCCGCC  850

seq1  TTTACAGCAAATGCTATAAATTACACTGGAATTTCTGACTTTCATCTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCAAATGCTATAAATTACACTGGAATTTCTGACTTTCATCTGGC  900

seq1  AAGAGGCTTCAATCAGAATTCCTCCCCGTATTCCCTTTGGTTTTTCATTT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAGGCTTCAATCAGAATTCCTCCCCGTATTCCCTTTGG-TTTTCATTT  949

seq1  CTGTCTTGCCTCAAGAGCATTTACATCATATACTTACTGCTCTATGACTG  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGCCTC-AGAGCATTTACATCATATACTTACTGCTCTATGACTG  998

seq1  GGAAGGATACGGAGCACACACAAATAGTGACCATCATCAGGATGAATTCA  1049
      ||||||||||||  ||||||||||||||||||||||||| ||||||||||
seq2  GGAAGGATACGGGACACACACAAATAGTGACCATCATCAAGATGAATTCA  1048

seq1  GGACAT-GTCACAGGGGCCTGTGTGTTCCATACACACGGTATCTTGTGGC  1098
      |||||| ||||||||| | |||||||||||||||||||  |||||||| |
seq2  GGACATGGTCACAGGGCCTTGTGTGTTCCATACACACG--ATCTTGTGAC  1096

seq1  CCTTCTCTGATTAGCTTTACCGTGCTTCC  1127
      || ||||||  |||| |||||| ||||||
seq2  CC-TCTCTGGATAGC-TTACCGGGCTTCC  1123