BAC Information

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BAC

Clone NameB6Ng01-014I05
Chromosome6 (Build37)
Map Location 11,477,971 - 11,611,959
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014I05.bB6Ng01-014I05.g
ACCDH849032DH849033
length5231,137
definitionDH849032|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I05, 5' end.DH849033|Mus musculus domesticus DNA, BAC clone: B6Ng01-014I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,611,433 - 11,611,959)(11,477,971 - 11,479,146)
sequence
ctttaaagacacctagagttctaatatgcactagacggttgaatgtatca
attagggcccttatttggggtggtgcagaaaggccacataggtgttatag
taagtaaccactgagaacttcatgagcttcaaaggcttgtgtaatgactc
ttgctctactgacttctagtcctctttcccatccttaaatattccccttc
ttactcaatattgtgctttatttagctaggtttttctatgtcctgtttct
ttaagaactataagctccaagattcacatttgtttttatcttcaaaagtt
atagcaaatttattattaacctaacatggaattaggcactttgcatgcta
atctaatacaatcttgcaagacaatgttttttcaagatatgatcattgta
ggtttgaatgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgt
caattagaatgtcatagtctataatcacttagatcttattttcattttgc
ttcttcagagtaaattgtagttc
gaattcactgtccaagcagtctaatttttctgtggactgcagcagggtca
gtaaaagactctatctcaaaaaattaggtggagggctattgaggaagatg
ctccatgtatatttctagcctccacatgcaactgcatactgcacacatgt
acatatgaaccctccaccacaggaatacacatacacaaatatgcataaaa
tattacaaagagagagaaatagagagaaacagagacagagagagagaggt
ctaagaatgagaaacagacaagcatgccaaacaatcagaaaccagaagaa
taaataaataaataaataaaggtaacatctgcctgcaagaataggaaaaa
gcagtaagtgaaaaagtcagtgaggaagaatcctgactctgaaattagcc
caaacaaaattttaaataatctcgatacttcagagtttcaccttgaatta
tttcaccatctttttattgaactgtgatgcatgacagagagcaaagcagc
aagtagctgccactttctagtgatgaacgaggaggggatcattcaccaag
tggtcaccatagggatgattcggaacatcctggacaaaccacccccacta
ctggagatacatgccacagagcagagccagggagtccctgtcaaagttat
tgcttattgcactctctctactgaagtcaatccttggaagctacacctct
tcttggagaagaacgccctctggcaggaactcatataagaacagctgttg
ttagcttggttctgggaacagaatgaaaacactgcaagaacccttgtcac
caggccctgcttgaagagcagcagcttctagtccagaatgtcttgtacac
tatgctttgccttatatacctttagggaaagaggagttatcccctatctg
agagactggaaatcactgcctttgctttcttatgcacagcagataatgtt
tgtatcctagaatactaaactatagcccatgtatagaataaaatgcggag
atgttttatgcatgacagtctgacagttagatcaaagagcatgcctttct
catacttcctgtgttagttaacatctctcctgtaagctacagacatgtga
tgtatctaactctggatgccaatctgattgatacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11611433_11611959
seq2: B6Ng01-014I05.b_48_576 (reverse)

seq1  GAACTACAA-TTACTCTG-AGAAGCAAAATGAAAATAAGATCTAAGTGAT  48
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  GAACTACAATTTACTCTGAAGAAGCAAAATGAAAATAAGATCTAAGTGAT  50

seq1  TATAGACTAAGACATTCTAATTGATAGTATAACACACACACACACACACA  98
      ||||||||| |||||||||||||| | | | |||||||||||||||||||
seq2  TATAGACTATGACATTCTAATTGACACTCTCACACACACACACACACACA  100

seq1  CACACACACACTTCATTCAAACCTACAATGATCATATCTTGAAAAAACAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACTTCATTCAAACCTACAATGATCATATCTTGAAAAAACAT  150

seq1  TGTCTTGCAAGATTGTATTAGATTAGCATGCAAAGTGCCTAATTCCATGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCAAGATTGTATTAGATTAGCATGCAAAGTGCCTAATTCCATGT  200

seq1  TAGGTTAATAATAAATTTGCTATAACTTTTGAAGATAAAAACAAATGTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAATAATAAATTTGCTATAACTTTTGAAGATAAAAACAAATGTGA  250

seq1  ATCTTGGAGCTTATAGTTCTTAAAGAAACAGGACATAGAAAAACCTAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAGCTTATAGTTCTTAAAGAAACAGGACATAGAAAAACCTAGCT  300

seq1  AAATAAAGCACAATATTGAGTAAGAAGGGGAATATTTAAGGATGGGAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCACAATATTGAGTAAGAAGGGGAATATTTAAGGATGGGAAAG  350

seq1  AGGACTAGAAGTCAGTAGAGCAAGAGTCATTACACAAGCCTTTGAAGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGAAGTCAGTAGAGCAAGAGTCATTACACAAGCCTTTGAAGCTC  400

seq1  ATGAAGTTCTCAGTGGTTACTTACTATAACACCTATGTGGCCTTTCTGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTCTCAGTGGTTACTTACTATAACACCTATGTGGCCTTTCTGCA  450

seq1  CCACCCCAAATAAGGGCCCTAATTGATACATTCAACCGTCTAGTGCATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAAATAAGGGCCCTAATTGATACATTCAACCGTCTAGTGCATAT  500

seq1  TAGAACTCTAGGTGTCTTTAAAGGAATTC  527
      |||||||||||||||||||||||||||||
seq2  TAGAACTCTAGGTGTCTTTAAAGGAATTC  529

seq1: chr6_11477971_11479146
seq2: B6Ng01-014I05.g_70_1206

seq1  GAATTCACTGTCCAAGCAGTCTAATTTTTCTGTGGACTGCAGCAGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCCAAGCAGTCTAATTTTTCTGTGGACTGCAGCAGGGTCA  50

seq1  GTAAAAGACTCTATCTCAAAAAATTAGGTGGAGGGCTATTGAGGAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGACTCTATCTCAAAAAATTAGGTGGAGGGCTATTGAGGAAGATG  100

seq1  CTCCATGTATATTTCTAGCCTCCACATGCAACTGCATACTGCACACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTATATTTCTAGCCTCCACATGCAACTGCATACTGCACACATGT  150

seq1  ACATATGAACCCTCCACCACAGGAATACACATACACAAATATGCATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAACCCTCCACCACAGGAATACACATACACAAATATGCATAAAA  200

seq1  TATTACAAAGAGAGAGAAATAGAGAGAAACAGAGACAGAGAGAGAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAGAGAGAGAAATAGAGAGAAACAGAGACAGAGAGAGAGAGGT  250

seq1  CTAAGAATGAGAAACAGACAAGCATGCCAAACAATCAGAAACCAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATGAGAAACAGACAAGCATGCCAAACAATCAGAAACCAGAAGAA  300

seq1  TAAATAAATAAATAAATAAAGGTAACATCTGCCTGCAAGAATAGGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAAGGTAACATCTGCCTGCAAGAATAGGAAAAA  350

seq1  GCAGTAAGTGAAAAAGTCAGTGAGGAAGAATCCTGACTCTGAAATTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGTGAAAAAGTCAGTGAGGAAGAATCCTGACTCTGAAATTAGCC  400

seq1  CAAACAAAATTTTAAATAATCTCGATACTTCAGAGTTTCACCTTGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAATTTTAAATAATCTCGATACTTCAGAGTTTCACCTTGAATTA  450

seq1  TTTCACCATCTTTTTATTGAACTGTGATGCATGACAGAGAGCAAAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCATCTTTTTATTGAACTGTGATGCATGACAGAGAGCAAAGCAGC  500

seq1  AAGTAGCTGCCACTTTCTAGTGATGAACGAGGAGGGGATCATTCACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGCCACTTTCTAGTGATGAACGAGGAGGGGATCATTCACCAAG  550

seq1  TGGTCACCATAGGGATGATTCGGAACATCCTGGACAAACCACCCCCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCATAGGGATGATTCGGAACATCCTGGACAAACCACCCCCACTA  600

seq1  CTGGAGATACATGCCACAGAGCAAAGCCAGGGAGTCCCTGTCAAAGTTAT  650
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGGAGATACATGCCACAGAGCAGAGCCAGGGAGTCCCTGTCAAAGTTAT  650

seq1  TGCTTATTGCACTCTCTCTACTGAAGTCAATCCTTGGAAGCTACACCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTGCACTCTCTCTACTGAAGTCAATCCTTGGAAGCTACACCTCT  700

seq1  TCTTGGAGAAGAACGCCCTCTGGCAGGAACTCATATAAGAACAGCTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGAAGAACGCCCTCTGGCAGGAACTCATATAAGAACAGCTGTTG  750

seq1  TTAGCTTGGTTCTGGGAACAGAATGAAAACACTGCAAGAACCCTTGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGGTTCTGGGAACAGAATGAAAACACTGCAAGAACCCTTGTCAC  800

seq1  CAGGCCCTGCTTGAAGAGCAGGCAGCTTCTAGTCCAGAAATGTCTTGTAC  850
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  CAGGCCCTGCTTGAAGAGCA-GCAGCTTCTAGTCCAG-AATGTCTTGTAC  848

seq1  ACTATGCTTTGCCTTATAATACCTTTAGGGAAAGAGGAGTTATCCCCTAT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTATGCTTTGCCTTAT-ATACCTTTAGGGAAAGAGGAGTTATCCCCTAT  897

seq1  CTGAAGAGAACTTGGAAATCACTGCCTTTGCTTTCTTAATGCACAGCAAG  950
      ||| |||||   ||||||||||||||||||||||||| ||||||||| ||
seq2  CTG-AGAGA--CTGGAAATCACTGCCTTTGCTTTCTT-ATGCACAGC-AG  942

seq1  AATAAATGTTTGTATCCTAGAAAATAACTAAACCTAATAGCCCAATGTAT  1000
      |   ||||||||||||||||||    |||||||   ||||||| ||||||
seq2  A--TAATGTTTGTATCCTAGAA---TACTAAAC--TATAGCCC-ATGTAT  984

seq1  AGGAATAAAAAATGCGGGAGAATGTTTTATGCATGACCAGGTCTGAGCAG  1050
      | ||||  ||||||| |||| ||||||||||||||||   |||||| |||
seq2  A-GAAT--AAAATGC-GGAG-ATGTTTTATGCATGAC--AGTCTGA-CAG  1026

seq1  TAAGATCAGAAAGAGCATG-CTTTCTCATACTTTCTGGTTGTTTGGTAAA  1099
      | |||||  |||||||||| ||||||||||||| |||  || || || ||
seq2  TTAGATC--AAAGAGCATGCCTTTCTCATACTTCCTG--TG-TTAGTTAA  1071

seq1  CATCTCTCCTGTAAGCTACAAGACTATGGTTGATTGTATCTAACTCTGGA  1149
      ||||||||||||||||||| |||| |||  ||| ||||||||||||||||
seq2  CATCTCTCCTGTAAGCTAC-AGAC-ATG--TGA-TGTATCTAACTCTGGA  1116

seq1  TAGCACAATACTGAATCTGAATACTTT  1176
      | || |||| ||||   |  |||||||
seq2  T-GC-CAAT-CTGA---TTGATACTTT  1137