BAC Information

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BAC

Clone NameB6Ng01-015E04
Chromosome6 (Build37)
Map Location 142,948,380 - 143,083,642
singlet/doubletdoublet
Overlap gene5730419I09Rik
Upstream geneEG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056
Downstream geneEtnk1, D6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015E04.bB6Ng01-015E04.g
ACCDH849569DH849570
length1,098935
definitionDH849569|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E04, 5' end.DH849570|Mus musculus domesticus DNA, BAC clone: B6Ng01-015E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,948,380 - 142,949,502)(143,082,706 - 143,083,642)
sequence
gaattcaaacttatgagtgtatgggggccattctccttcgaataccacac
atctcagaaaaacaagatcaagaccaggactggctgttttaaagatgcaa
aagacttgacaaccttcagttaagttttcaatgtttatttatttatttgg
tgccaagccatcaccctattcttgcaatttcaagatgtataattttctta
ctttggcatatctgaaatcagtgagtctctctggctgccatctaccaggc
cgccagcctacattctggagggatagagatctccatcgaggggagagtct
catggaaaggagtgagactttaccaacagctttgttttgtttctgagaca
aggcctcactatgtatctctgatcctgggatccactgtatgatcgatctt
gtctagaacttaaggcaaccctccagactctgcctccagagtttctgggg
tcccaggtgtgtgttatgaacactctgttgcacagtcagcagcagtgcat
agaacaggatgtataatgtcaggtatttggtcatgtactgagaaaagtcg
ccaatgtgttgtcatagatgagcagagttttagacacacccgatttgtgt
tgcaataaaacacacactgagagtcaaccataagcatccatgcagaaatg
aaaatacacgcacaccaataaacagaaacctgtgacacttgatatcaacc
tttctactcttcaaaaagtttgccagtgctctaaatagataaaaaccgat
gctaacatcaaaggttatatcaatttaggattcagtttggtgcttagcac
tgcagactcagtcctctgcaagagcagtagtcatgcttaaccaccgagcc
atttctccaactagcatcatagctgtaaacagcaacaaactattaatgat
acataaacattagagaatagctctttacaaaactgagaaaacagctttat
gcttaaaggtatttctatattatagtacacataatattagatttattgtt
tagatgtatataatatgtgtgtgtattttgctggttgtatgagtcagaca
tcctaggtatcagagatcagagggcatggatcagttgcagaattgatc
gaattcatagatggcaactttcttctccttggtcatccatattattggct
cagggtctggggccgaggctctgttcccatttctgcatcagttcctcctc
tggagttcctcccagcttcatattgggacgttcctcactgtctgcgtctt
atcatcttttctctctttatttcatattttcttttctcttcctctgacac
tgcctcaaatctgccctttctaccactcataacgttttctccagtatcaa
ctttgttctttactggttttgctgtagactgtaattctgatgtcagtcgg
gcggtggtggtgcacgtctttagtcccagcacttgggaggcagaggcagg
cggatttctgagttcgaggccagcctggtctacagagtgagttccaggat
agccagggctacacagagaaaccctgtctcgaaaaacaaaaaacaaacaa
acaaaaaaaacaaaacaaacaaatctggtgtccagcttttctttctttgt
gtgccttcttgttcttgttttcatcaatatcatgcttctccctgggtaaa
ataatttgaatgaatgaatgagcgagtgaatgaatgaatgaatgaacgaa
cagaaagtctcaccatatggagcaggccagcttcagtttaggagtctcct
tctacagaagcatctaagtgccgggattacagcgtcaaactgccatagcc
agcggataattttatcgttaacaaacacagaaggcattttagggattttg
aactctgtggtacagtgcttgtgaagtgaacggaaaactcatggcctgtt
cgtaacttctctacaaacaaacaaacaagcaaaagaacaacagaaaagat
gaagtagaccgagaagtccttttttttgttgttgttgttttgcattttaa
tgtgtgtgggcatgttgcctgcatgtatgtgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142948380_142949502
seq2: B6Ng01-015E04.b_44_1141

seq1  GAATTCAAACTTATGAGTGTATGGGGGCCATTCTCCTTCGAATACCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTATGAGTGTATGGGGGCCATTCTCCTTCGAATACCACAC  50

seq1  ATCTCAGAAAAACAAGATCAAGACCAGGACTGGCTGTTTTAAAGATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAAAAACAAGATCAAGACCAGGACTGGCTGTTTTAAAGATGCAA  100

seq1  AAGACTTGACAACCTTCAGTTAAGTTTTCAATGTTTATTTATTTATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGACAACCTTCAGTTAAGTTTTCAATGTTTATTTATTTATTTGG  150

seq1  TGCCAAGCCATCACCCTATTCTTGCAATTTCAAGATGTATAATTTTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCCATCACCCTATTCTTGCAATTTCAAGATGTATAATTTTCTTA  200

seq1  CTTTGGCATATCTGAAATCAGTGAGTCTCTCTGGCTGCCATCTACCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCATATCTGAAATCAGTGAGTCTCTCTGGCTGCCATCTACCAGGC  250

seq1  CGCCAGCCTACATTCTGGAGGGATAGAGATCTCCATCGAGGGGAGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCCTACATTCTGGAGGGATAGAGATCTCCATCGAGGGGAGAGTCT  300

seq1  CATGGAAAGGAGTGAGACTTTACCAACAGCTTTGTTTTGTTTCTGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGGAGTGAGACTTTACCAACAGCTTTGTTTTGTTTCTGAGACA  350

seq1  AGGCCTCACTATGTATCTCTGATCCTGGGATCCACTGTATGATCGATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCACTATGTATCTCTGATCCTGGGATCCACTGTATGATCGATCTT  400

seq1  GTCTAGAACTTAAGGCAACCCTCCAGACTCTGCCTCCAGAGTTTCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAACTTAAGGCAACCCTCCAGACTCTGCCTCCAGAGTTTCTGGGG  450

seq1  TCCCAGGTGTGTGTTATGAACACTCTGTTGCACAGTCAGCAGCAGTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGTGTGTTATGAACACTCTGTTGCACAGTCAGCAGCAGTGCAT  500

seq1  AGAACAGGATGTATAATGTCAGGTATTTGGTCATGTACTGAGAAAAGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGATGTATAATGTCAGGTATTTGGTCATGTACTGAGAAAAGTCG  550

seq1  CCAATGTGTTGTCATAGATGAGCAGAGTTTTAGACACACCCGATTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGTTGTCATAGATGAGCAGAGTTTTAGACACACCCGATTTGTGT  600

seq1  TGCAATAAAACACACACTGAGAGTCAACCATAAGCATCCATGCAGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAAAACACACACTGAGAGTCAACCATAAGCATCCATGCAGAAATG  650

seq1  AAAATACACGCACACCAATAAACAGAAACCTGTGACACTTGATATCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACGCACACCAATAAACAGAAACCTGTGACACTTGATATCAACC  700

seq1  TTTCTACTCTTCAAAAAGTTTGCCAGTGCTCTAAATAGATAAAAACCGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTCTTCAAAAAGTTTGCCAGTGCTCTAAATAGATAAAAACCGAT  750

seq1  GCTAACATCAAAGGTTATATCAATTTAGGATTCAGGTTTGGTGCTTAGCA  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTAACATCAAAGGTTATATCAATTTAGGATTCA-GTTTGGTGCTTAGCA  799

seq1  CTGCAGACTCAGGTCCTCTGCAAGAGCAGTAGTCATGCTTAACCACCGAG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACTCA-GTCCTCTGCAAGAGCAGTAGTCATGCTTAACCACCGAG  848

seq1  CCATTTCTCCAACTAGCATCATAGCTGTAAACAGCAACAAACTATTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCCAACTAGCATCATAGCTGTAAACAGCAACAAACTATTAATG  898

seq1  ATACATAAACATTAGGAGAAATAGCTCTTTACAAAACTGAGAAAACAGCT  950
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  ATACATAAACATTA-GAG-AATAGCTCTTTACAAAACTGAGAAAACAGCT  946

seq1  TTATGCTTAAAGGTATTTCTATATTATAAGTAACACCATAATATTTTAGA  1000
      ||||||||||||||||||||||||||| ||| ||| |||||||  |||||
seq2  TTATGCTTAAAGGTATTTCTATATTAT-AGT-ACA-CATAATA--TTAGA  991

seq1  TTTATTTGTTTAGAATTGTTATAT-ATATGTGTGTGTATTTTGCCTGTGT  1049
      |||| |||||||||  || ||||| |||||||||||||||||||     |
seq2  TTTA-TTGTTTAGA--TG-TATATAATATGTGTGTGTATTTTGC-----T  1032

seq1  GTATGTATGTACAACACATCCCTAGTATCCAGAGATCAGAAGGGGCATTG  1099
      |  ||||||    | ||||||   |||| |||||||||||  ||||| ||
seq2  GGTTGTATGAGTCAGACATCCTAGGTAT-CAGAGATCAGA--GGGCA-TG  1078

seq1  GATCATGTTGCAGGATATTTGATC  1123
      ||||| |||||||   | ||||||
seq2  GATCA-GTTGCAG---AATTGATC  1098

seq1: chr6_143082706_143083642
seq2: B6Ng01-015E04.g_70_1004 (reverse)

seq1  TGCACACATACATGCAGGCAACATGCCCACACACATTTAAAATGCAAAAC  50
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAACACATACATGCAGGCAACATGCCCACACACA-TTAAAATGCAAAAC  49

seq1  AACAACAACAAAAAAAAGGACTTCTCGGTCTACTTCATCTTTTCTGTTTG  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACAACAACAAAAAAAAGGACTTCTCGGTCTACTTCATCTTTTCTG-TTG  98

seq1  TTCTTTTGCTTGTTTGTTTGTTTGTAGAGAAGTTACGAACAGGCCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGCTTGTTTGTTTGTTTGTAGAGAAGTTACGAACAGGCCATGAG  148

seq1  TTTTCCGTTCACTTCACAAGCACTGTACCACAGAGTTCAAAATCCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGTTCACTTCACAAGCACTGTACCACAGAGTTCAAAATCCCTAAA  198

seq1  ATGCCTTCTGTGTTTGTTAACGATAAAATTATCCGCTGGCTATGGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTGTGTTTGTTAACGATAAAATTATCCGCTGGCTATGGCAGTT  248

seq1  TGACGCTGTAATCCCGGCACTTAGATGCTTCTGTAGAAGGAGACTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCTGTAATCCCGGCACTTAGATGCTTCTGTAGAAGGAGACTCCTAA  298

seq1  ACTGAAGCTGGCCTGCTCCATATGGTGAGACTTTCTGTTCGTTCATTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTGGCCTGCTCCATATGGTGAGACTTTCTGTTCGTTCATTCAT  348

seq1  TCATTCATTCACTCGCTCATTCATTCATTCAAATTATTTTACCCAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCACTCGCTCATTCATTCATTCAAATTATTTTACCCAGGGAG  398

seq1  AAGCATGATATTGATGAAAACAAGAACAAGAAGGCACACAAAGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGATATTGATGAAAACAAGAACAAGAAGGCACACAAAGAAAGAAA  448

seq1  AGCTGGACACCAGATTTGTTTGTTTTGTTTTTTTTGTTTGTTTGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACACCAGATTTGTTTGTTTTGTTTTTTTTGTTTGTTTGTTTTTT  498

seq1  GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCA  548

seq1  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCT  598

seq1  CCCAAGTGCTGGGACTAAAGACGTGCACCACCACCGCCCGACTGACATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGGGACTAAAGACGTGCACCACCACCGCCCGACTGACATCA  648

seq1  GAATTACAGTCTACAGCAAAACCAGTAAAGAACAAAGTTGATACTGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGTCTACAGCAAAACCAGTAAAGAACAAAGTTGATACTGGAGA  698

seq1  AAACGTTATGAGTGGTAGAAAGGGCAGATTTGAGGCAGTGTCAGAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTATGAGTGGTAGAAAGGGCAGATTTGAGGCAGTGTCAGAGGAAG  748

seq1  AGAAAAGAAAATATGAAATAAAGAGAGAAAAGATGATAAGACGCAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAATATGAAATAAAGAGAGAAAAGATGATAAGACGCAGACAG  798

seq1  TGAGGAACGTCCCAATATGAAGCTGGGAGGAACTCCAGAGGAGGAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACGTCCCAATATGAAGCTGGGAGGAACTCCAGAGGAGGAACTGA  848

seq1  TGCAGAAATGGGAACAGAGCCTCGGCCCCAGACCCTGAGCCAATAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATGGGAACAGAGCCTCGGCCCCAGACCCTGAGCCAATAATATG  898

seq1  GATGACCAAGGAGAAGAAAGTTGCCATCTATGAATTC  937
      |||||||||||||||||||||||||||||||||||||
seq2  GATGACCAAGGAGAAGAAAGTTGCCATCTATGAATTC  935