BAC Information

Click to search

BAC

Clone NameB6Ng01-015K02
Chromosome6 (Build37)11 (Build37)
Map Location 18,835,257 - 18,835,78040,702,376 - 40,703,276
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015K02.bB6Ng01-015K02.g
ACCDH849833DH849834
length720933
definitionDH849833|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K02, 5' end.DH849834|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,257 - 18,835,780)(40,702,376 - 40,703,276)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtaataaagctttaggtcaggcatgggtgattccaccagagggttct
tttatcccttgagaagaatttttttgctttcctcggttttttgttattcc
cagatgaatttggcaaattg
gaattctttgtctagctctgagcctcattttttaatggggttattttatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagataaagaccatttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttttagattctctatgactaatgtctttataaaaacaga
tgacattgaagaaaagcatcagaggggagatcctccaagtatgactggag
cagaggcaacttgctgaagctgcaaccaacggccttcaaggaattttggc
aaccacagaaattaagggagggatgagggccttttactccagagccttca
gaggaagcaaaggccaacggataccatggattcagaattctacattccag
aatttagagaaaatgagtttctgttatttgaagacactggcatcttttga
tttgctgtggaagccccagagatctaatgtataccatagaagggaattac
tgttgaaaagcaaaatggcagttgggtatcaactcagaaatttaaagcac
cagtgagggggtataaagagagaaggtgttacccaccacaacatacttac
ttattgttacacactctaaacttcttatccttggtttcttagattaaaat
agaaaaggaataaaattgtctatttcttctctgtgccttactcttttgat
gaatcaaattatgggaaaggggatattttttgtttcttgatccagtttta
taatccatatacagttgtgagaaactctaaacagttttggcaacaacatt
tgtcatctttattttaggccccatctagttattacgtgtgaatattggca
aagtattttgaaggggtgtggattgttgagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835257_18835780
seq2: B6Ng01-015K02.b_230_761 (reverse)

seq1  CAATTTG-CAAATTCATCT-GGAATAACAAAAAACCTAGGATAGC--AAA  46
      ||||||| ||||||||||| |||||||||||||||| |||| |||  |||
seq2  CAATTTGCCAAATTCATCTGGGAATAACAAAAAACCGAGGAAAGCAAAAA  50

seq1  ACCTCTTCTCAA-GGATAAAAGAA-CCTCTGGTGGAATCA-CCATGCCTG  93
      |  ||||||||| ||||||||||| ||||||||||||||| |||||||||
seq2  AATTCTTCTCAAGGGATAAAAGAACCCTCTGGTGGAATCACCCATGCCTG  100

seq1  ACCTAAAGCTTTACTACAGAGCAATTGTGGTAAAAACTGCATGGTACTGG  143
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  ACCTAAAGCTTTATTACAGAGCAATTGTGATAAAAACTGCATGGTACTGG  150

seq1  TATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAGAT  193
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TATAGAGACAGACAAGTGGACCAATGGAATAGAATTGAAGACCCAGAAAT  200

seq1  GAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCA  243
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCCAAAACCA  250

seq1  TCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGG  300

seq1  TTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTAC  343
      |||||||| |||||||||||| |||||||||||||||||||||| |||||
seq2  TTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTAC  350

seq1  TAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACAC  400

seq1  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGA  443
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACA  450

seq1  GGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAG  492
      |||||||| ||||||||||||||||||||||| |||||||| || | |||
seq2  GGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  500

seq1  AATCGACAAATGGGACCTAATGAAACTCCAAA  524
      ||| ||||||||||||||||||||||||||||
seq2  AATTGACAAATGGGACCTAATGAAACTCCAAA  532

seq1: chr11_40702376_40703276
seq2: B6Ng01-015K02.g_94_998

seq1  TTTTTAATGGGGTTATTTTATTTTCTGGAGTCCACCTTCTTGAGTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGGGGTTATTTTATTTTCTGGAGTCCACCTTCTTGAGTTCTTT  50

seq1  ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGATAAAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGATAAAGACCA  100

seq1  TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCC  150

seq1  TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTTTAGATTCTCTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTTTAGATTCTCTATGA  200

seq1  CTAATGTCTTTATAAAAACAGATGACATTGAAGAAAAGCATCAGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTCTTTATAAAAACAGATGACATTGAAGAAAAGCATCAGAGGGGA  250

seq1  GATCCTCCAAGTATGACTGGAGCAGAGGCAACTTGCTGAAGCTGCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCAAGTATGACTGGAGCAGAGGCAACTTGCTGAAGCTGCAACCA  300

seq1  ACGGCCTTCAAGGAATTTTGGCAACCACAGAAATTAAGGGAGGGATGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCTTCAAGGAATTTTGGCAACCACAGAAATTAAGGGAGGGATGAGG  350

seq1  GCCTTTTACTCCAGAGCCTTCAGAGGAAGCAAAGGCCAACGGATACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTACTCCAGAGCCTTCAGAGGAAGCAAAGGCCAACGGATACCATG  400

seq1  GATTCAGAATTCTACATTCCAGAATTTAGAGAAAATGAGTTTCTGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAATTCTACATTCCAGAATTTAGAGAAAATGAGTTTCTGTTATT  450

seq1  TGAAGACACTGGCATCTTTTGATTTGCTGTGGAAGCCCCAGAGATCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTGGCATCTTTTGATTTGCTGTGGAAGCCCCAGAGATCTAAT  500

seq1  GTATACCATAGAAGGGAATTACTGTTGAAAAGCAAAATGGCAGTTGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCATAGAAGGGAATTACTGTTGAAAAGCAAAATGGCAGTTGGGTA  550

seq1  TCAACTCAGAAATTTAAAGCACCAGTGAGGGGGTATAAAGAGAGAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGAAATTTAAAGCACCAGTGAGGGGGTATAAAGAGAGAAGGTG  600

seq1  TTACCCACCACAACATACTTACTTATTGTTACACACTCTAAACTTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACCACAACATACTTACTTATTGTTACACACTCTAAACTTCTTAT  650

seq1  CCTTGGTTTCTTAGATTAAAATAGAAAAGGAATAAAATTGTCTATTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTTCTTAGATTAAAATAGAAAAGGAATAAAATTGTCTATTTCTT  700

seq1  CTCTGTGCCTTACTCTTTTGATGAATCAAATTAT-GGAAAGGGGATA-TT  748
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CTCTGTGCCTTACTCTTTTGATGAATCAAATTATGGGAAAGGGGATATTT  750

seq1  TTTGTTTCTTGATCCAGTTTTATAATCCATATACAGTTGTGAGAAACTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTGATCCAGTTTTATAATCCATATACAGTTGTGAGAAACTCT  800

seq1  AAACAGTTTTGGCAACAACATTTGTCATCTTTATTTTAGGCCCCATCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACAGTTTTGGCAACAACATTTGTCATCTTTATTTTAGGCCCCATC-TA  849

seq1  GTTATTACGTGTGAATATT-GCAGAGTATTTTGAAGGTGTGTGTAT--GT  895
      ||||||||||||||||||| ||| ||||||||||||| ||||| ||   |
seq2  GTTATTACGTGTGAATATTGGCAAAGTATTTTGAAGGGGTGTGGATTGTT  899

seq1  GAGAAG  901
      ||||||
seq2  GAGAAG  905