BAC Information

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BAC

Clone NameB6Ng01-015M10
Chromosome6 (Build37)
Map Location 86,082,565 - 86,255,165
singlet/doubletdoublet
Overlap geneTgfa, LOC665233, LOC100043094
Upstream geneSpr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Downstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015M10.bB6Ng01-015M10.g
ACCDH849943DH849944
length825736
definitionDH849943|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M10, 5' end.DH849944|Mus musculus domesticus DNA, BAC clone: B6Ng01-015M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,082,565 - 86,083,396)(86,254,430 - 86,255,165)
sequence
gaattcccaaggccactcgacaggaaaacaaggatcctctttagagcatt
tgtgggaaacaaacagccatactgcccccttgattttggggtggtatcct
ccaaaactgttagaaagcacagcttattttttataagccacccatgctgt
ggcaaatgcacacacacacacacacacacacacacacacacacacacaca
cacacacacacacaaacacacacacttccatacattgtgagggtactaga
ttccattctggagtcccctgagtgacacatatgaaatcttaaggagggac
ccactccctcttagttccatgtgtgaatggtatcgagctaatagctgttg
ggtgtatcctgtgatgggtttgggcagatgagcaggaatcccctctcagg
gagggggccttcatatctcaaaggcaaggtggacatagtctgaagcctgg
agcaacggtctctgtccagcctcccagatcaaacttcaaggccatcttta
ggctgaaagccagacttcaaagtctaaaggtttcttacaaagtcaaaaag
gaaatctctcctgctttctgttcctttttactgtatttcccagatttctt
taaatatgatttcaatgtaatgaaaaattataattgttgggtcatgaatg
tttcccagatgcccatgtagtgaggacttggccacagcccatggtgctgt
tcaaagtggtagtgtctctaagtggaggtctcattagagaaagtacatca
ctgggtgtgttgctgatggggatactggtacccaagcctcctcttctgtc
tttattaccccatcatgaagaaata
gaattctctcgactgtgtctgcagggatgcccagtctggaaagcttcggg
aatgtgtctgcctgcaggtgaggtcatttggctgagcacctgtaaaaatg
aaaggtgaggttaaccgcagcttgcttctccacatctcgctcactgctgg
tgggctgttcccaaatcactctccagaggctggtgatgctgttcacacca
ttaaagctcgagacgccgggcttgacattggcactcaatgtctggccagt
ctgaaagcctgggatgtcagggccacccgggactctgacttggtctgtgt
ggagatgaaacacagcatttgtttaaagcttcctggctgattcccatgca
cagtcaggtctaaggagctgtttccaagacgtgtatgtccattctgtata
actgggttgagggctggctcctgggggaagccctgggtgcaggcctgcca
gtgtctgaggactgatatagtttgggtttttaatctccgccaaaggatca
ggcattaaagttttgtctcctagcccatagtgctgttgggaggcagaggt
gtgacttctcctggggagacatgaacaaatgtctacttaccacagatagg
cactgatgatggcccaaagaagtgatctgtccagtatagcttagtgagat
gattgttttgatagggttacttataggggacaagctgtggcatcatcaaa
aacgccctggcatggtgacaagtttctctgcatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86082565_86083396
seq2: B6Ng01-015M10.b_45_869

seq1  GAATTCCCAAGGCCACTCGACAGGAAAAGAAGGATCCTCTTTAGAGCATT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCCCAAGGCCACTCGACAGGAAAACAAGGATCCTCTTTAGAGCATT  50

seq1  TGTGGGAAACAAACAGCCATACTGCCCCCTTGATTTTGGGGTGGTATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAACAAACAGCCATACTGCCCCCTTGATTTTGGGGTGGTATCCT  100

seq1  CCAAAACTGTTAGAAAGCACAGCTTATTTTTTATAAGCCACCCATGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGTTAGAAAGCACAGCTTATTTTTTATAAGCCACCCATGCTGT  150

seq1  GGCAAATGCACACACACACACACACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGCACACACACACACACACACACACACACACACACACACACACA  200

seq1  CACACACACACACAAACACACACACTTCCATACATTGTGAGGGTACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAAACACACACACTTCCATACATTGTGAGGGTACTAGA  250

seq1  TTCCATTCTGGAGTCCCCTGAGTGACACAGATGAAATCTTAAGGAGGGAC  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCATTCTGGAGTCCCCTGAGTGACACATATGAAATCTTAAGGAGGGAC  300

seq1  CCACTCCCTCTTAGTTCCATGTGTGAATGGTATCGAGCTAATAGCTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCTCTTAGTTCCATGTGTGAATGGTATCGAGCTAATAGCTGTTG  350

seq1  GGTGTATCCTGTGATGGGTTTGGGCAGATGAGCAGGAATCCCCTCTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATCCTGTGATGGGTTTGGGCAGATGAGCAGGAATCCCCTCTCAGG  400

seq1  GAGGGGGCCTTCATATCTCAAAGGCAAGGTGGACATAGTCTGAAGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCCTTCATATCTCAAAGGCAAGGTGGACATAGTCTGAAGCCTGG  450

seq1  AGCAACGGTCTCTGTCCAGCCTCCCAGATCAAACTTCAAGGCCATCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGGTCTCTGTCCAGCCTCCCAGATCAAACTTCAAGGCCATCTTTA  500

seq1  GGCTGAAAGCCAGACTTCAAAGTCTAAAGGTTTCTTACAAAGTCAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGCCAGACTTCAAAGTCTAAAGGTTTCTTACAAAGTCAAAAAG  550

seq1  GAAATCTCTCCTGCTTTCTGTTCCTTTTTACTGTATTTCCCAGATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCTCCTGCTTTCTGTTCCTTTTTACTGTATTTCCCAGATTTCTT  600

seq1  TAAATGTGGTTTCAATGTAATGAAAAATTATAATGGTTGGGTCATGAATG  650
      ||||| || ||||||||||||||||||||||||| |||||||||||||||
seq2  TAAATATGATTTCAATGTAATGAAAAATTATAATTGTTGGGTCATGAATG  650

seq1  TTTCCCAGAGGCCCATGTAGTGAGGACTTGGCCACAGCCCATGGTGCTGT  700
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGATGCCCATGTAGTGAGGACTTGGCCACAGCCCATGGTGCTGT  700

seq1  TGCAAAGTGGTAGTGTCTCTAAGTGGAGGGTTCATTAGAGAAAGTTACAT  750
      | |||||||||||||||||||||||||||  ||||||||||||| |||||
seq2  T-CAAAGTGGTAGTGTCTCTAAGTGGAGGTCTCATTAGAGAAAG-TACAT  748

seq1  CACTGGGGTGTGTTGCTGATGGGGATACTGGTACCCAGGCCGTCCTCTTC  800
      |||| |||||||||||||||||||||||||||||||| ||| ||||||| 
seq2  CACT-GGGTGTGTTGCTGATGGGGATACTGGTACCCAAGCC-TCCTCTT-  795

seq1  CTGTCTTTGTTTAGCCCATCATGAAGTAAATA  832
      ||||||||  ||| |||||||||||| |||||
seq2  CTGTCTTT-ATTACCCCATCATGAAG-AAATA  825

seq1: chr6_86254430_86255165
seq2: B6Ng01-015M10.g_68_803 (reverse)

seq1  GCTATGCAGAG-AACTTGTCACCATGCCAGGGCGTTTTTGATGATGCCAC  49
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGAGAAACTTGTCACCATGCCAGGGCGTTTTTGATGATGCCAC  50

seq1  AGCTTGTCCCCTATAAGTAACCCTAACAAAACAATCATCTCACTAAGCTA  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCTTGTCCCCTATAAGTAACCCTATCAAAACAATCATCTCACTAAGCTA  100

seq1  TACTTGGACAGATCACTTCTTTGGGCCATCATCAGTGCCTATCTGTGGTA  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAC-TGGACAGATCACTTCTTTGGGCCATCATCAGTGCCTATCTGTGGTA  149

seq1  AGTAGACATTTGTTCATGTCTCCCCAGGAGAAGTCACACCTCTGCCTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATTTGTTCATGTCTCCCCAGGAGAAGTCACACCTCTGCCTCCC  199

seq1  AACAGCACTATGGGCTAGGAGACAAAACTTTAATGCCTGATCCTTTGGCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACTATGGGCTAGGAGACAAAACTTTAATGCCTGATCCTTTGGCG  249

seq1  GAGATTAAAAACCCAAACTATATCAGTCCTCAGACACTGGCAGGCCTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAAAACCCAAACTATATCAGTCCTCAGACACTGGCAGGCCTGCA  299

seq1  CCCAGGGCTTCCCCCAGGAGCCAGCCCTCAACCCAGTTATACAGAATGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTTCCCCCAGGAGCCAGCCCTCAACCCAGTTATACAGAATGGA  349

seq1  CATACACGTCTTGGAAACAGCTCCTTAGACCTGACTGTGCATGGGAATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACGTCTTGGAAACAGCTCCTTAGACCTGACTGTGCATGGGAATCA  399

seq1  GCCAGGAAGCTTTAAACAAATGCTGTGTTTCATCTCCACACAGACCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCTTTAAACAAATGCTGTGTTTCATCTCCACACAGACCAAGT  449

seq1  CAGAGTCCCGGGTGGCCCTGACATCCCAGGCTTTCAGACTGGCCAGACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCCGGGTGGCCCTGACATCCCAGGCTTTCAGACTGGCCAGACAT  499

seq1  TGAGTGCCAATGTCAAGCCCGGCGTCTCGAGCTTTAATGGTGTGAACAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCAATGTCAAGCCCGGCGTCTCGAGCTTTAATGGTGTGAACAGC  549

seq1  ATCACCAGCCTCTGGAGAGTGATTTGGGAACAGCCCACCAGCAGTGAGCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGCCTCTGGAGAGTGATTTGGGAACAGCCCACCAGCAGTGAGCG  599

seq1  AGATGTGGAGAAGCAAGCTGCGGTTAACCTCACCTTTCATTTTTACAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGAGAAGCAAGCTGCGGTTAACCTCACCTTTCATTTTTACAGGT  649

seq1  GCTCAGCCAAATGACCTCACCTGCAGGCAGACACATTCCCGAAGCTTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCAAATGACCTCACCTGCAGGCAGACACATTCCCGAAGCTTTCC  699

seq1  AGACTGGGCATCCCTGCAGACACAGTCGAGAGAATTC  736
      |||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGCATCCCTGCAGACACAGTCGAGAGAATTC  736