BAC Information

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BAC

Clone NameB6Ng01-016C16
Chromosome6 (Build37)
Map Location 34,662,495 - 34,799,849
singlet/doubletdoublet
Overlap geneCald1, Agbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C16.bB6Ng01-016C16.g
ACCDH850216DH850217
length6401,053
definitionDH850216|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C16, 5' end.DH850217|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,662,495 - 34,663,134)(34,798,793 - 34,799,849)
sequence
gaattcaaagtcctcccacttcatgggctccaggaacgcacgtggtgcac
agaactacttgcaggcagaatacctgtacacattaaaaagttaaagaaat
aaaaatatttaaagtattgttttatccagtgtgccaggggatgtaacatt
ttgattttccaataggatagctttcctattaataacagaaagtatttctt
tcccctcttatgagcaacattacagcccatttaaaataatttccagtgtc
tgggagttgtcatcttcagtgttattcttagatgtgctgtgaagcagaga
tactcaccccaagctgtgcccaccgcctctttattgtcacctttaccttc
tctagaagctggcagtcagattgcttttcatgtcccactctggtcgacag
tagcccagggtgtcagggaagccacaggttagagtgtgtcagaaagaaag
gtaacggcccctagactgtcttctcttacaaagaaagcagcatgtgtatt
ttgtgattcttgctttgcgttacaaattggatttgtgtgtgtgtgtgtgt
gcgcgcgagcgcgcaagagagagagaaagagagagagagagagagagaga
gagagagagagagagagagagagagaggtgtaagtgtgtg
gaattccatttcaggtctatcatattccatctgtccttctgaaactctga
catgaaaacagactgtattttatctcccacaagtccctctatttaatctc
cttgtctctgctggtcagctaagtaatctctctctcaagccatcggctcc
ttttgtcacgctgctatactggcagatggactccttttttccaacgttgt
acttttcagttttatagatgtcgcttggctacttttaatattacttttaa
tttctctccctcagccatttctttccttttgctctttctccttctttctt
ttatcatctctcctcgctcttttcttttatctccttcccccttttccttt
cccatccctcttctttcttgtctttctctccttggtcatgacagctacag
cactccgctagaaactacgactaactgcctgtcttctgtatgatgttgat
gattatacagtaaagggataaacatcacacagaggacctccctgcccgcc
agtactttacctatctagaggtaatcgctcttgaggatgtgtgcttctaa
agctttcttcttcattctatttgagtgtgtataatgcatacatacatgta
aatgtaatcacctaagccaaactggtagatagcccatgcttttgcacata
tatggtgaacatcatttcctattaactagtagtcactttgccatactgaa
gtactacataatatttcataatttaaggaattttctattcttgaacatct
atattctttattttttaactcctataagcaatactgaaatgaacattaca
tatgactctgtttctcattcagtttttccttagatcgacttccaagtggg
gatctgctttagtcaagtgagtggtgtgacctgggtgctttagtcaaggt
gagtggtgtgacctggtgctttaatcaaggtgagtgggtgtgacctgtgg
ctttagtcaggggatggtggactggagctttagtcaagggagtggtgtga
cctggtgcttaatcaaagtgagtggtgagacctgtgctttatcaaggtga
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34662495_34663134
seq2: B6Ng01-016C16.b_45_684

seq1  GAATTCAAAGTCCTCCCACTTCATGGGCTCCAGGAACGCACGTGGTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCCTCCCACTTCATGGGCTCCAGGAACGCACGTGGTGCAC  50

seq1  AGAACTACTTGCAGGCAGAATACCTGTACACATTAAAAAGTTAAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACTTGCAGGCAGAATACCTGTACACATTAAAAAGTTAAAGAAAT  100

seq1  AAAAATATTTAAAGTATTGTTTTATCCAGTGTGCCAGGGGATGTAACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTAAAGTATTGTTTTATCCAGTGTGCCAGGGGATGTAACATT  150

seq1  TTGATTTTCCAATAGGATAGCTTTCCTATTAATAACAGAAAGTATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCCAATAGGATAGCTTTCCTATTAATAACAGAAAGTATTTCTT  200

seq1  TCCCCTCTTATGAGCAACATTACAGCCCATTTAAAATAATTTCCAGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTTATGAGCAACATTACAGCCCATTTAAAATAATTTCCAGTGTC  250

seq1  TGGGAGTTGTCATCTTCAGTGTTATTCTTAGATGTGCTGTGAAGCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTGTCATCTTCAGTGTTATTCTTAGATGTGCTGTGAAGCAGAGA  300

seq1  TACTCACCCCAAGCTGTGCCCACCGCCTCTTTATTGTCACCTTTACCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACCCCAAGCTGTGCCCACCGCCTCTTTATTGTCACCTTTACCTTC  350

seq1  TCTAGAAGCTGGCAGTCAGATTGCTTTTCATGTCCCACTCTGGTCGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGCTGGCAGTCAGATTGCTTTTCATGTCCCACTCTGGTCGACAG  400

seq1  TAGCCCAGGGTGTCAGGGAAGCCACAGGTTAGAGTGTGTCAGAAAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGGTGTCAGGGAAGCCACAGGTTAGAGTGTGTCAGAAAGAAAG  450

seq1  GTAACGGCCCCTAGACTGTCTTCTCTTACAAAGAAAGCAGCATGTGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGGCCCCTAGACTGTCTTCTCTTACAAAGAAAGCAGCATGTGTATT  500

seq1  TTGTGATTCTTGCTTTGCGTTACAAATTGGATTTGTGTGTGTGTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTCTTGCTTTGCGTTACAAATTGGATTTGTGTGTGTGTGTGTGT  550

seq1  GCGCGCGAGCGCGCAAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGAGCGCGCAAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA  600

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGGTGTAAGTGTGTG  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGGTGTAAGTGTGTG  640

seq1: chr6_34798793_34799849
seq2: B6Ng01-016C16.g_65_1117 (reverse)

seq1  CACTCACCTTGACTAAAGCACCAGGTCACACCACTCACTTTGACTAAAGC  50
      |||||||||||| ||||||| |||||| ||||||||||||||| | ||||
seq2  CACTCACCTTGA-TAAAGCA-CAGGTCTCACCACTCACTTTGA-TTAAGC  47

seq1  ACCAGGTCACACCACTCACCTTGACTAAAGCACCAGGTCACACCACTCAC  100
      ||||||||||||||||| ||||||||||||| ||| ||| ||||| || |
seq2  ACCAGGTCACACCACTC-CCTTGACTAAAGCTCCA-GTC-CACCA-TC-C  92

seq1  CTTGACTAAAGCACCAGGTCACA-CCACTCACCTTGACTAAAGCACCAGG  149
      | ||||||||||  ||||||||| ||||||||||||| ||||||||||||
seq2  CCTGACTAAAGCCACAGGTCACACCCACTCACCTTGATTAAAGCACCAGG  142

seq1  TCACACCACTCACCTTGACTAAAGCA-CCAGGTCACACCACTCACTTTGA  198
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  TCACACCACTCACCTTGACTAAAGCACCCAGGTCACACCACTCAC-TTGA  191

seq1  CTAAAGCAGAT-CCCACTTGGAAGTCGATCTAAGGAAAAACTGAATGAGA  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAGATCCCCACTTGGAAGTCGATCTAAGGAAAAACTGAATGAGA  241

seq1  AACAGAGTCATATGTAATGTTCATTTCAGTATTGCTTATAGGAGTTAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTCATATGTAATGTTCATTTCAGTATTGCTTATAGGAGTTAAAA  291

seq1  AATAAAGAATATAGATGTTCAAGAATAGAAAATTCCTTAAATTATGAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAATATAGATGTTCAAGAATAGAAAATTCCTTAAATTATGAAAT  341

seq1  ATTATGTAGTACTTCAGTATGGC-AAGTGACTACTAGTTAATAGGAAATG  396
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTATGTAGTACTTCAGTATGGCAAAGTGACTACTAGTTAATAGGAAATG  391

seq1  ATGTTCACCATATATGTGC-AAAGCATGGGCTATCTACCAGTTTGGCTTA  445
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTTCACCATATATGTGCAAAAGCATGGGCTATCTACCAGTTTGGCTTA  441

seq1  GGTGATTACATTTACATGTATGTATGCATTATACACACTCAAATAGAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTACATTTACATGTATGTATGCATTATACACACTCAAATAGAATG  491

seq1  AAGAAGAAAGCTTTAGAAGCACACATCCTCAAGAGCGATTACCTCTAGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGCTTTAGAAGCACACATCCTCAAGAGCGATTACCTCTAGAT  541

seq1  AGGTAAAGTACTGGCGGGCAGGGAGGTCCTCTGTGTGATGTTTATCCCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGTACTGGCGGGCAGGGAGGTCCTCTGTGTGATGTTTATCCCTT  591

seq1  TACTGTATAATCATCAACATCATACAGAAGACAGGCAGTTAGTCGTAGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATAATCATCAACATCATACAGAAGACAGGCAGTTAGTCGTAGTT  641

seq1  TCTAGCGGAGTGCTGTAGCTGTCATGACCAAGGAGAGAAAGACAAGAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGGAGTGCTGTAGCTGTCATGACCAAGGAGAGAAAGACAAGAAAG  691

seq1  AAGAGGGATGGGAAAGGAAAAGGGGGAAGGAGATAAAAGAAAAGAGCGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGATGGGAAAGGAAAAGGGGGAAGGAGATAAAAGAAAAGAGCGAG  741

seq1  GAGAGATGATAAAAGAAAGAAGGAGAAAGAGCAAAAGGAAAGAAATGGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGATAAAAGAAAGAAGGAGAAAGAGCAAAAGGAAAGAAATGGCT  791

seq1  GAGGGAGAGAAATTAAAAGTAATATTAAAAGTAGCCAAGCGACATCTATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGAAATTAAAAGTAATATTAAAAGTAGCCAAGCGACATCTATA  841

seq1  AAACTGAAAAGTACAACGTTGGAAAAAAGGAGTCCATCTGCCAGTATAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAAGTACAACGTTGGAAAAAAGGAGTCCATCTGCCAGTATAGC  891

seq1  AGCGTGACAAAAGGAGCCGATGGCTTGAGAGAGAGATTACTTAGCTGACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGACAAAAGGAGCCGATGGCTTGAGAGAGAGATTACTTAGCTGACC  941

seq1  AGCAGAGACAAGGAGATTAAATAGAGGGACTTGTGGGAGATAAAATACAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACAAGGAGATTAAATAGAGGGACTTGTGGGAGATAAAATACAG  991

seq1  TCTGTTTTCATGTCAGAGTTTCAGAAGGACAGATGGAATATGATAGACCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCATGTCAGAGTTTCAGAAGGACAGATGGAATATGATAGACCT  1041

seq1  GAAATGGAATTC  1057
      ||||||||||||
seq2  GAAATGGAATTC  1053