BAC Information

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BAC

Clone NameB6Ng01-016D04
Chromosome6 (Build37)
Map Location 47,417,974 - 47,553,588
singlet/doubletdoublet
Overlap geneCul1, Ezh2
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078, A930035D04Rik
Downstream geneRn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016D04.bB6Ng01-016D04.g
ACCDH850236DH850237
length837819
definitionDH850236|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D04, 5' end.DH850237|Mus musculus domesticus DNA, BAC clone: B6Ng01-016D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,552,755 - 47,553,588)(47,417,974 - 47,418,791)
sequence
gaattcacactgtagaccaggctagccttgaactcagaaatctgcctgcc
tctgcctcccaagtgctgggattgtgggacgagatttttaagatcacact
gctaagctgacaggagggagggagaggggagacaatggcagtgatgcaaa
ggacaagtccttggtaacagaggtgcagcctgatattgcttactgttctc
attacctgaccaagctaaagatgaaaggaaccatcttaggtagaaagggt
gctgattttctcctgccctgaaaaagtgcactgagcacatttcttagaat
accttggcaatggttttttaaaaagaccattgctaagctgggtagtggtg
gcacatgcctttaatcttagcactcaggaggaagaggaagtcagatctct
gtgagttcaaggcttggttggtctacagagtgagttctagtaccaccagg
gccatacagagaaagcctgtcttaaaataccaaaacaaacaaacaaacaa
cccaaataaaccattgttgtgttcactttttaagaggggcctcgtagtct
cttgcaaatggaggctagaggtaatactaatgtctccttccttttttttg
gacagggatgcactgaattttaaattttatccatttgacttgactagata
gccaataagtttgtgggatgtctaactagctcctcccatcccagtactga
ggtacaggtatctgtaccacaatgcctagtattttatgttggtttctggg
gaatccaaactcaggttttcatgctttgtgctggaggaaattttacctgc
agagccatgtcctcagcatggagtctattatttctac
gaattcaggccatcaggctttcagtactttacttctgagctcctttacca
gtctcatgcctatgagttctatccatggaccccactgaagtttctttcac
ttgacctagtttgccaagcttcctcctctgaagctggctttttttttttt
tttttaaatctttctagaaacaaaaatatactcgtgtccgtatgttggta
tttgttcttccctatacatagaaggtctcctgctttgatcagctaatgtc
tactgagaaatgcttgtgtggtcagtacccagaggccctcctcattcctt
tgcataattgcataggacaccaaggtgtggacaggtcttcttgtcccctg
ctgatggaattttttttttttttttttgataaattactagtgttttgcag
tgactaaacttgaatttacaacttcttggaattttggcctgtttatttgg
gggagagattcctacaaatggatttctgggccaaaggtaaaatgtttccg
ttttaggaagaaaaaaagccaacttttctatcattgaacatttctactag
ttagaacaaagttgcacttttaaaaaagatttacttttatttatttcaaa
ttatgtgtgtgtaggggagaggtatgtgtgcatattttacatacagggtg
ccctccaaatctagacgaggcattgtcaaaaccctgattgtgctagaaac
tttgggacctccgcaagagccccaaacactgttttagctgaaccctctct
ccagccccttgaatgtaaatgttattgtctgttctggaaatgaaagagaa
attggtggaaggttgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47552755_47553588
seq2: B6Ng01-016D04.b_39_875 (reverse)

seq1  GTAGAAATAATAGACTCCATGCTGAGGACATGGCTCTGCAGGTAAAA-TT  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGAAATAATAGACTCCATGCTGAGGACATGGCTCTGCAGGTAAAATTT  50

seq1  CCTCCAGCAC-AAGCATGAAAACCTGAGTTTGGATTCCCCAG-AACCAAC  97
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  CCTCCAGCACAAAGCATGAAAACCTGAGTTTGGATTCCCCAGAAACCAAC  100

seq1  ATAAAATACTAGGCATTGTGGTACAGATACCTGTACCTCAGTACTGGGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATACTAGGCATTGTGGTACAGATACCTGTACCTCAGTACTGGGAT  150

seq1  GGGAGGAGCTAGTTAGACATCCCACAAACTTATTGGCTATCTAGTCAAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGCTAGTTAGACATCCCACAAACTTATTGGCTATCTAGTCAAGT  200

seq1  CAAATGGATAAAATTTAAAATTCAGTGCATCCCTGTCCAAAAAAAAGGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGATAAAATTTAAAATTCAGTGCATCCCTGTCCAAAAAAAAGGAA  250

seq1  GGAGACATTAGTATTACCTCTAGCCTCCATTTGCAAGAGACTACGAGGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATTAGTATTACCTCTAGCCTCCATTTGCAAGAGACTACGAGGCC  300

seq1  CCTCTTAAAAAGTGAACACAACAATGGTTTATTTGGGTTGTTTGTTTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAAAAGTGAACACAACAATGGTTTATTTGGGTTGTTTGTTTGTT  350

seq1  TGTTTTGGTATTTTAAGACAGGCTTTCTCTGTATGGCCCTGGTGGTACTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGTATTTTAAGACAGGCTTTCTCTGTATGGCCCTGGTGGTACTA  400

seq1  GAACTCACTCTGTAGACCAACCAAGCCTTGAACTCACAGAGATCTGACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAACCAAGCCTTGAACTCACAGAGATCTGACTT  450

seq1  CCTCTTCCTCCTGAGTGCTAAGATTAAAGGCATGTGCCACCACTACCCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTCCTGAGTGCTAAGATTAAAGGCATGTGCCACCACTACCCAG  500

seq1  CTTAGCAATGGTCTTTTTAAAAAACCATTGCCAAGGTATTCTAAGAAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAATGGTCTTTTTAAAAAACCATTGCCAAGGTATTCTAAGAAATG  550

seq1  TGCTCAGTGCACTTTTTCAGGGCAGGAGAAAATCAGCACCCTTTCTACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGCACTTTTTCAGGGCAGGAGAAAATCAGCACCCTTTCTACCT  600

seq1  AAGATGGTTCCTTTCATCTTTAGCTTGGTCAGGTAATGAGAACAGTAAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTTCCTTTCATCTTTAGCTTGGTCAGGTAATGAGAACAGTAAGC  650

seq1  AATATCAGGCTGCACCTCTGTTACCAAGGACTTGTCCTTTGCATCACTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGGCTGCACCTCTGTTACCAAGGACTTGTCCTTTGCATCACTGC  700

seq1  CATTGTCTCCCCTCTCCCTCCCTCCTGTCAGCTTAGCAGTGTGATCTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTCCCCTCTCCCTCCCTCCTGTCAGCTTAGCAGTGTGATCTTAA  750

seq1  AAATCTCGTCCCACAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCGTCCCACAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTT  800

seq1  CTGAGTTCAAGGCTAGCCTGGTCTACAGTGTGAATTC  834
      |||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAGGCTAGCCTGGTCTACAGTGTGAATTC  837

seq1: chr6_47417974_47418791
seq2: B6Ng01-016D04.g_65_883

seq1  GAATTCAGGCCATCAGGCTTTCAGTACTTTACTTCTGAGCTCCTTTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCATCAGGCTTTCAGTACTTTACTTCTGAGCTCCTTTACCA  50

seq1  GTCTCATGCCTATGAGTTCTATCCATGGACCCCACTGAAGTTTCTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGCCTATGAGTTCTATCCATGGACCCCACTGAAGTTTCTTTCAC  100

seq1  TTGACCTAGTTTGCCAAGCTTCCTCCTCTGAAGCTGGCTTTTTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTAGTTTGCCAAGCTTCCTCCTCTGAAGCTGGCTTTTTTTTTTTT  150

seq1  TTTTTAAATCTTTCTAGAAACAAAAATATACTCGTGTCCGTATGTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCTTTCTAGAAACAAAAATATACTCGTGTCCGTATGTTGGTA  200

seq1  TTTGTTCTTCCCTATACATAGAAGGTCTCCTGCTTTGATCAGCTAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTCCCTATACATAGAAGGTCTCCTGCTTTGATCAGCTAATGTC  250

seq1  TACTGAGAAATGCTTGTGTGGTCAGTACCCAGAGGCCCTCCTCATTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGAAATGCTTGTGTGGTCAGTACCCAGAGGCCCTCCTCATTCCTT  300

seq1  TGCATAATTGCATAGGACACCAAGGTGTGGACAGGTCTTCTTGTCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTGCATAGGACACCAAGGTGTGGACAGGTCTTCTTGTCCCCTG  350

seq1  CTGATGGAATTTTTTTTTTTTTTTTTTGATAAATTACTAGTGTTTTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAATTTTTTTTTTTTTTTTTTGATAAATTACTAGTGTTTTGCAG  400

seq1  TGACTAAACTTGAATTTACAACTTCTTGGAATTTTGGCCTGTTTATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAACTTGAATTTACAACTTCTTGGAATTTTGGCCTGTTTATTTGG  450

seq1  GGGAGAGATTCCTACAAATGGATTTCTGGGCCAAAGGTAAAATGTTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGATTCCTACAAATGGATTTCTGGGCCAAAGGTAAAATGTTTCCG  500

seq1  TTTTAGGAAGAAAAAAAGCCAACTTTTCTATCATTGAACATTTCTACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAGAAAAAAAGCCAACTTTTCTATCATTGAACATTTCTACTAG  550

seq1  TTAGAACAAAGTTGCACTTTTAAAAAAGATTTACTTTTATTTATTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAAAGTTGCACTTTTAAAAAAGATTTACTTTTATTTATTTCAAA  600

seq1  TTATGTGTGTGTAGGGGAGAGGTATGTGTGCATA-TTTACATACA-GGTG  648
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TTATGTGTGTGTAGGGGAGAGGTATGTGTGCATATTTTACATACAGGGTG  650

seq1  CCCTCCAAATCTAGACGAGGCATTGTCAAAACCCTGATTGTGCTAGAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAATCTAGACGAGGCATTGTCAAAACCCTGATTGTGCTAGAAAC  700

seq1  TTT-GGACCTCTGCAAGAGCCCCAAACACTGTTTATAGCTGAACCCTCTC  747
      ||| ||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TTTGGGACCTCCGCAAGAGCCCCAAACACTGTTT-TAGCTGAACCCTCTC  749

seq1  TCCAGCCCCTTGAATGTTAATTGTTATTGTCTGTTCTGGAATTGAAAGAG  797
      |||||||||||||||| ||| |||||||||||||||||||| ||||||||
seq2  TCCAGCCCCTTGAATG-TAAATGTTATTGTCTGTTCTGGAAATGAAAGAG  798

seq1  AAATTGTTGGAGGTTTGAAAG  818
      |||||| |||| | |||||||
seq2  AAATTGGTGGAAGGTTGAAAG  819