BAC Information

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BAC

Clone NameB6Ng01-016L24
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,448 - 18,835,96898,261,519 - 98,262,666
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016L24.bB6Ng01-016L24.g
ACCDH850624DH850625
length9831,142
definitionDH850624|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L24, 5' end.DH850625|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,448 - 18,835,968)(98,261,519 - 98,262,666)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctatagtccaccttcttaagttctttatatatgttggatattagtccc
ctatatgatttaggataggtaaagatactttcccaatctgttggtggtct
ttttgtcttatcgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaaccagttgtgccagcaacaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
aaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcgggcatggtgattccaccagatgttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatcttttccatct
ttctgagatcttctttaatttctttcttcagagacttgaagtttttatca
tacagatctttcacttccttagtttgagtcacgccgagatattttatatt
attgtgactattgagaagggtgttgtttcccta
gaattctaaatcttttaatatttttaattttctttcttaagtacaaagat
aagtattacaaaatgaaacgtaaaaatgtaaatactaataatgttttagt
gtaaactcgggttatttttaatatcatatatcttttttacgcttgttagt
taagccagatggttttaatagatactttatgcatgttttatttgagtcat
attgatttgtttatattattttgttctattttattttgtgtgtgtgaggg
gcaaggtctttcccttgcatatatgtctgtgaaccatgtgtgtgtagtaa
ttgaggatatcagaaaactttggatatcctgagaataatgttacaaacag
ttgtgacatgtgtctaggtactaggaattgggcctgagtcatctccaagc
ttttttaagtcaagtaacaaaaaagtctaaaatttcatttgcatgattat
tctatagattacagaatgtgatcatatagtgtgtattaatttaaaaacaa
acaatattttgtcttttttcagagtcaagttattcaaagcttgtactttg
ctcatattaggaatcttgtcgtaggaataaagagaagacaagaccaaagc
aactgagggatgggccttactccggggtacaggaagaccataaaataaga
ccactcaaagcaaagcatgttaaaatgaaagaccaaggtgaagccagagt
aaaactgtgctacaaataaaatcccaagaaaagagctagggaaagatata
aaacatacagtgtagattaattattaaaattcacaaaatgatgcaactgc
aattaaagtcagataaaaaaatctagaataaagccagatgcagggaaatg
atgggtaagcccaagagacccataaatgttgtcagtagagaaaagtagga
acacttccttctagttgcaaaatcagattatgggtgtgtaatccatgttg
catttctttggcagtgacagaagtagaaagcaaacatatatctcatttga
tcagggtctcaaggaaaaggataaggctgtctcttgtgagactaatgccg
ggctagcaaacacagaagtggaatgctcacagatagctaatgatggatca
caggctccaatggaggagctgggaaagtactcaaggacctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835448_18835968
seq2: B6Ng01-016L24.b_44_565 (reverse)

seq1  ATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGAACCCACACACCTATGGTTACTTGATCTTCGACAAGGGAGCTAAAAC  50

seq1  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT  100
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGTTGCTGGCACAACT  100

seq1  GGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGT  150
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  GGTTGTTATCATGTAGAAGAATGTGAATCGATCCATACTTATCTCCTTGT  150

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGAC  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTAAGGTCAAATCTAAATGGATCAAGGAACTTCACATAAAACCAGAGAC  200

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCA  250

seq1  GAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAG  299
       ||||||||| ||||||||||||||||||||||| ||| |||| || | |
seq2  CAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTACTGTAAGATTG  300

seq1  AGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAA  350

seq1  AGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCT  399
      |||||| ||| |||||||||||||||||||||||||||||||||| ||||
seq2  AGACACTGTCGATAAGACAAAAAGACCACCAACAGATTGGGAAAGTATCT  400

seq1  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAA  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTACCTATCCTAAATCATATAGGGGACTAATATCCAACATATATAAAGAA  450

seq1  CTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGG  499
      || |||||||||||||  ||||||||||||||||||||||| ||||||||
seq2  CTTAAGAAGGTGGACTATAGAAAATCAAATAACCCCATTAAAAAATGGGG  500

seq1  CTCAGAACTGAACAAAGAATTC  521
      ||||||||||||||||||||||
seq2  CTCAGAACTGAACAAAGAATTC  522

seq1: chr1_98261519_98262666
seq2: B6Ng01-016L24.g_65_1206

seq1  GAATTCTAAATCTTTTAATATTTTTAATTTTCTTTCTTAAGTACAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATCTTTTAATATTTTTAATTTTCTTTCTTAAGTACAAAGAT  50

seq1  AAGTATTACAAAATGAAACGTAAAAATGTAAATACTAATAATGTTTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTACAAAATGAAACGTAAAAATGTAAATACTAATAATGTTTTAGT  100

seq1  GTAAACTCGGGTTATTTTTAATATCATATATCTTTTTTACGCTTGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCGGGTTATTTTTAATATCATATATCTTTTTTACGCTTGTTAGT  150

seq1  TAAGCCAGATGGTTTTAATAGATACTTTATGCATGTTTTATTTGAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGATGGTTTTAATAGATACTTTATGCATGTTTTATTTGAGTCAT  200

seq1  ATTGATTTGTTTATATTATTTTGTTCTATTTTATTTTGTGTGTGTGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGTTTATATTATTTTGTTCTATTTTATTTTGTGTGTGTGAGGG  250

seq1  GCAAGGTCTTTCCCTTGCATATATGTCTGTGAACCATGTGTGTGTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCTTTCCCTTGCATATATGTCTGTGAACCATGTGTGTGTAGTAA  300

seq1  TTGAGGATATCAGAAAACTTTGGATATCCTGAGAATAATGTTACAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATATCAGAAAACTTTGGATATCCTGAGAATAATGTTACAAACAG  350

seq1  TTGTGACATGTGTCTAGGTACTAGGAATTGGGCCTGAGTCATCTCCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACATGTGTCTAGGTACTAGGAATTGGGCCTGAGTCATCTCCAAGC  400

seq1  TTTTTTAAGTCAAGTAACAAAAAAGTCTAAAATTTCATTTGCATGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTCAAGTAACAAAAAAGTCTAAAATTTCATTTGCATGATTAT  450

seq1  TCTATAGATTACAGAATGTGATCATATAGTGTGTATTAATTTAAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATTACAGAATGTGATCATATAGTGTGTATTAATTTAAAAACAA  500

seq1  ACAATATTTTGTCTTTTTTCAGAGTCAAGTTATTCAAAGCTTGTACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTTGTCTTTTTTCAGAGTCAAGTTATTCAAAGCTTGTACTTTG  550

seq1  CTCATATTAGGAATCTTGTCGTAGGAATAAAGAGAAGACAAGACCAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTAGGAATCTTGTCGTAGGAATAAAGAGAAGACAAGACCAAAGC  600

seq1  AACTGAGGGATGGGCCTTACTCCGGGGTACAGGAAGACCATAAAATAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGGATGGGCCTTACTCCGGGGTACAGGAAGACCATAAAATAAGA  650

seq1  CCACTCAAAGCAAAGCATGTTAAAATGAAAGACCAAGGTGAAGCCAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAAAGCAAAGCATGTTAAAATGAAAGACCAAGGTGAAGCCAGAGT  700

seq1  AAAACTGTGCTACAAATAAAATCCCAAGAAAAGAGCTAGGGAAAGATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGCTACAAATAAAATCCCAAGAAAAGAGCTAGGGAAAGATATA  750

seq1  AAACATACAGTGTAGATTAATTATTAAAATTCACAAAATGATGCAACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACAGTGTAGATTAATTATTAAAATTCACAAAATGATGCAACTGC  800

seq1  AATTAAAGTCAGATAAAAAAATCTAGAATAAAGCCAGATGCAGGGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGTCAGATAAAAAAATCTAGAATAAAGCCAGATGCAGGGAAATG  850

seq1  ATGGGTAAGCCCAAGAGACCCATAAATGTTGTCAGTAGAGAAAAGTAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAAGCCCAAGAGACCCATAAATGTTGTCAGTAGAGAAAAGTAGGA  900

seq1  ACACTTCCTTCTAGTTGCAAAATCAGATTATGGGTGTGTTATCCCATGTT  950
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  ACACTTCCTTCTAGTTGCAAAATCAGATTATGGGTGTGTAAT-CCATGTT  949

seq1  GCA-TTCCTTGGCAGTGACAGAAGTAGAAAGCAAACATATATCTCCATTT  999
      ||| ||| |||||||||||||||||||||||||||||||||||||   ||
seq2  GCATTTCTTTGGCAGTGACAGAAGTAGAAAGCAAACATATATCTC--ATT  997

seq1  TGATCAGGGTCTC-AGGAAAAGGATAAAAGCTGTCTCTTGTGAGACT-AT  1047
      ||||||||||||| ||||||||||| || |||||||||||||||||| ||
seq2  TGATCAGGGTCTCAAGGAAAAGGAT-AAGGCTGTCTCTTGTGAGACTAAT  1046

seq1  GCCGGGGCCTAGCAAACACAGAAGTGG-ATGCTCACAGTAAGCTAATGGA  1096
      ||||||  ||||||||||||||||||| ||||||||||  ||||||| ||
seq2  GCCGGG--CTAGCAAACACAGAAGTGGAATGCTCACAGATAGCTAAT-GA  1093

seq1  TGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  1146
      ||||||||| |||| |||||||||||||| | |||||||| |||||| ||
seq2  TGGATCACA-GGCT-CCAATGGAGGAGCT-GGGAAAGTACTCAAGGACCT  1140

seq1  AA  1148
      ||
seq2  AA  1142