BAC Information

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BAC

Clone NameB6Ng01-016M03
Chromosome6 (Build37)
Map Location 99,097,134 - 99,262,323
singlet/doubletdoublet
Overlap geneFoxp1
Upstream geneGm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016M03.bB6Ng01-016M03.g
ACCDH850630DH850631
length1,002781
definitionDH850630|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M03, 5' end.DH850631|Mus musculus domesticus DNA, BAC clone: B6Ng01-016M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,261,323 - 99,262,323)(99,097,134 - 99,097,912)
sequence
gaattccaagtgtatgtgcgccggcattgctgcgtgtaatgacactcatt
cccgaagtgatctatgtgggctcagacttgttttgctattttataaaaat
ccagagtcatatgcggtgttcagtagaattctttatcctgagtggcagac
agagtttgttgaaatatttctttaatttgaattgcacattctatgatgaa
ccactttgggagcagtctccgttttatcatccctttaatagatgtaggcc
taccttttaaaaaagttattcattttaaattattatatgaatatttcagg
attataatcatcgtaaaatgaaagaaaatttgtcagaccaaaatagaaat
ttaatttaagatagaaattgattataaggtttagttaggactagaaacgt
gcataaaagggtatttttaaagccctccagctatacagttttgttatcat
ttcagaaaaatcacagatgtgtttattgatgtccttggtgatcatgtttg
agccagtttaattaaaggccaaacttttgtaaggttgaaaaagcaaagta
agccttgtgtcatccatggagaaatgaatgtaaagatctgcactcagagc
accgagattactgtcaccaagcaaacagcaaatgcagggacagacaaatc
ccaatgccctgacccagccaggccctgaaggagcccggggcctgtccgag
atacttaggcatccaggcctgttactcctctacacacaggggtccagacc
cagaacctgcccagatacggagcagtggtcaagtgaagacaatgtggtat
acaggcacaatggagttctaggtttctattaaaaaacaaaacaaaacaaa
acaacaacaacaacaaaaccatgtcaggtacaggaaaagcatctgagctg
cggggttatcctgtgaagtgaaagaagccagactcaggggacatcaagtt
ttctcttgtttgccgaatttagttcaagtaaacagcgggggggggggggg
tg
gaattcaatagtttactgattacatgtggatataagatgagtggggcagg
ctaaagaatggaacactctagagaaacaacccagtccataccagaccagt
atgttgggatccatactatcttgaccatggctttggtccatccttaaagg
atgggggacaaggagggtgatccagtactgagcacggtttaaagcagtga
ctgtttggccaagggcaatgtgctacttacacattcactacaccacctct
ttcagaaaggtgaatttgtgctgctccattttacaggtaagaaaatggag
acacagaatgctggtcacacgggacaacttttctcttttcttttcttttc
ttttcttttcttttcttttcttttcttttctttctttctttctttctttc
tttctttctttctttctttttttgttttttgttgctgttttggttttcca
agaaaaggtttctctttgtagccctggctgtcctggaactcactctgtag
accaggctggcctcaaactcagaaatctgcctgcctctgcctcccaagtg
ctgggattaaaggtgtgtgccaccactgcctggctgggacagcttttctc
atgcacgaactgtgaaaggtgggggttccaccctcctggcagggaattcc
agtcaaatggtcccccctacctctacaactcccaaagggaagtagcctca
gaaaggacagaagaagtgaccgagaagcgtgtacctatgtgtgcctgtgg
ctatgggaagggggtgtccacagggcctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_99261323_99262323
seq2: B6Ng01-016M03.b_43_1044 (reverse)

seq1  --CACCCCCCCCCCCCGCTGTTTACTTGAACTTAAATTCGGCAAACAAGA  48
        | ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACCCCCCCCCCCCCCGCTGTTTACTTGAAC-TAAATTCGGCAAACAAGA  49

seq1  GAAAACTTGATGTCCCCTGAGTCTGGCTTCTTTCACTTCACAGGATAACC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTGATGTCCCCTGAGTCTGGCTTCTTTCACTTCACAGGATAACC  99

seq1  CCGCAGCTCAGATGCTTTTCCTGTACCTGACATGGTTTTGTTGTTGTTGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCTCAGATGCTTTTCCTGTACCTGACATGGTTTTGTTGTTGTTGT  149

seq1  TGTTTTGTTTTGTTTTGTTTTTTAATAGAAACCTAGAACTCCATTGTGCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTTTAATAGAAACCTAGAACTCCATTGTGCC  199

seq1  TGTATACCACATTGTCTTCACTTGACCACTGCTCCGTATCTGGGCAGGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCACATTGTCTTCACTTGACCACTGCTCCGTATCTGGGCAGGTT  249

seq1  CTGGGTCTGGACCCCTGTGTGTAGAGGAGTAACAGGCCTGGATGCCTAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTGGACCCCTGTGTGTAGAGGAGTAACAGGCCTGGATGCCTAAG  299

seq1  TATCTCGGACAGGCCCCGGGCTCCTTCAGGGCCTGGCTGGGTCAGGGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCGGACAGGCCCCGGGCTCCTTCAGGGCCTGGCTGGGTCAGGGCAT  349

seq1  TGGGATTTGTCTGTCCCTGCATTTGCTGTTTGCTTGGTGACAGTAATCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGTCTGTCCCTGCATTTGCTGTTTGCTTGGTGACAGTAATCTC  399

seq1  GGTGCTCTGAGTGCAGATCTTTACATTCATTTCTCCATGGATGACACAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTGAGTGCAGATCTTTACATTCATTTCTCCATGGATGACACAAG  449

seq1  GCTTACTTTGCTTTTTCAACCTTACAAAAGTTTGGCCTTTAATTAAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTTGCTTTTTCAACCTTACAAAAGTTTGGCCTTTAATTAAACTG  499

seq1  GCTCAAACATGATCACCAAGGACATCAATAAACACATCTGTGATTTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAACATGATCACCAAGGACATCAATAAACACATCTGTGATTTTTCT  549

seq1  GAAATGATAACAAAACTGTATAGCTGGAGGGCTTTAAAAATACCCTTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATAACAAAACTGTATAGCTGGAGGGCTTTAAAAATACCCTTTTA  599

seq1  TGCACGTTTCTAGTCCTAACTAAACCTTATAATCAATTTCTATCTTAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTTTCTAGTCCTAACTAAACCTTATAATCAATTTCTATCTTAAAT  649

seq1  TAAATTTCTATTTTGGTCTGACAAATTTTCTTTCATTTTACGATGATTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCTATTTTGGTCTGACAAATTTTCTTTCATTTTACGATGATTAT  699

seq1  AATCCTGAAATATTCATATAATAATTTAAAATGAATAACTTTTTTAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGAAATATTCATATAATAATTTAAAATGAATAACTTTTTTAAAAG  749

seq1  GTAGGCCTACATCTATTAAAGGGATGATAAAACGGAGACTGCTCCCAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTACATCTATTAAAGGGATGATAAAACGGAGACTGCTCCCAAAG  799

seq1  TGGTTCATCATAGAATGTGCAATTCAAATTAAAGAAATATTTCAACAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATCATAGAATGTGCAATTCAAATTAAAGAAATATTTCAACAAAC  849

seq1  TCTGTCTGCCACTCAGGATAAAGAATTCTACTGAACACCGCATATGACTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGCCACTCAGGATAAAGAATTCTACTGAACACCGCATATGACTC  899

seq1  TGGATTTTTATAAAATAGCAAAACAAGTCTGAGCCCACATAGATCACTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTTATAAAATAGCAAAACAAGTCTGAGCCCACATAGATCACTTC  949

seq1  GGGAATGAGTGTCATTACACGCAGCAATGCCGGCGCACATACACTTGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAGTGTCATTACACGCAGCAATGCCGGCGCACATACACTTGGAA  999

seq1  TTC  1001
      |||
seq2  TTC  1002

seq1: chr6_99097134_99097912
seq2: B6Ng01-016M03.g_69_849

seq1  GAATTCAATAGTTTACTGATTACATGTGGATATAAGATGAGTGGGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTTTACTGATTACATGTGGATATAAGATGAGTGGGGCAGG  50

seq1  CTAAAGAATGGAACACTCTAGAGAAACAACCCAGTCCATACCAGACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAATGGAACACTCTAGAGAAACAACCCAGTCCATACCAGACCAGT  100

seq1  ATGTTGGGATCCATACTATCTTGACCATGGCTTTGGTCCATCCTTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGGATCCATACTATCTTGACCATGGCTTTGGTCCATCCTTAAAGG  150

seq1  ATGGGGGACAAGGAGGGTGATCCAGTACTGAGCACGGTTTAAAGCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGACAAGGAGGGTGATCCAGTACTGAGCACGGTTTAAAGCAGTGA  200

seq1  CTGTTTGGCCAAGGGCAATGTGCTACTTACACATTCACTACACCACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCCAAGGGCAATGTGCTACTTACACATTCACTACACCACCTCT  250

seq1  TTCAGAAAGGTGAATTTGTGCTGCTCCATTTTACAGGTAAGAAAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGGTGAATTTGTGCTGCTCCATTTTACAGGTAAGAAAATGGAG  300

seq1  ACACAGAATGCTGGTCACACGGGACAACTTTTCTCTTTTCTTTTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATGCTGGTCACACGGGACAACTTTTCTCTTTTCTTTTCTTTTC  350

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTC  400

seq1  TTTCTTTCTTTCTTTCTTTTTTTGTTTTTTGTTGCTGTTTTGGTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTTTTTGTTTTTTGTTGCTGTTTTGGTTTTCCA  450

seq1  AGAAAAGGTTTCTCTTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGTTTCTCTTTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  500

seq1  ACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG  550

seq1  CTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCTGGGACAGCTTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCTGGGACAGCTTTTCTC  600

seq1  ATGCACGAACTGTGAAAGGT-GGGGTTCCACCCTCCTGGCAGGGAATTCC  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCACGAACTGTGAAAGGTGGGGGTTCCACCCTCCTGGCAGGGAATTCC  650

seq1  AGTCAAATGGT-CCCCCTACCTCTACAACTCCCAAAGGGAAGTAGCCTCA  698
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATGGTCCCCCCTACCTCTACAACTCCCAAAGGGAAGTAGCCTCA  700

seq1  GAAAGGACAGAAGAAGTGACCGAGAAGCGTGTACCTATGTGTGCCTGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACAGAAGAAGTGACCGAGAAGCGTGTACCTATGTGTGCCTGTGG  750

seq1  CTATGGGAAGGGGGTGTCCACAGGGCCTGGG  779
      |||||||||||||||||||||||||||||||
seq2  CTATGGGAAGGGGGTGTCCACAGGGCCTGGG  781