BAC Information

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BAC

Clone NameB6Ng01-016N11
Chromosome6 (Build37)
Map Location 34,632,887 - 34,799,849
singlet/doubletdoublet
Overlap geneCald1, Agbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016N11.bB6Ng01-016N11.g
ACCDH850691DH850692
length7171,057
definitionDH850691|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N11, 5' end.DH850692|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,632,887 - 34,633,603)(34,798,788 - 34,799,849)
sequence
gaattctatccagacatggcttctcctacacaggaatagtgtgatatgag
ggggtcttgctttaagaccagccaagtgccattctcataaatgtacctct
ctgctgccataacacacacacacacacacacacacacacacacacacaca
cagacacacacacacacacacagacacacatagacacacacagacacaga
cacacatagacacacacacacacacacacacatagacacacacacacaga
cacacatagacacacacacacacacagacacacatagacacacacacaca
cagagacacacatagacacacacacacatacaaacaagcatgtacatgca
cagacacacacatacaaacaaatatatatatatatatatatatatatata
tatatatatatatatatacacacacacaggcaaacacatacataacacct
acacaaaatacacacataaacatatacaaagacacacacacacataagca
caggtgcacagacatttgcacacatttatacaaacacacataaacccagt
aaacacacacagcaaccaaaagtcatactacagaatgcacacatgtgttt
tctttccaccatatattcacaggatgtatttcacaagggcactggtttag
agttgcaagaaaaaatacttttttgtggtcccttattccccctggtaaca
tacatagtctataccca
gaattccatttcaggtctatcatattccatctgtccttctgaaactctga
catgaaaacagactgtattttatctcccacaagtccctctatttaatctc
cttgtctctgctggtcagctaagtaatctctctctcaagccatcggctcc
ttttgtcacgctgctatactggcagatggactccttttttccaacgttgt
acttttcagttttatagatgtcgcttggctacttttaatattacttttaa
tttctctccctcagccatttctttccttttgctctttctccttctttctt
ttatcatctctcctcgctcttttcttttatctccttcccccttttccttt
cccatccctcttctttcttgtctttctctccttggtcatgacagctacag
cactccgctagaaactacgactaactgcctgtcttctgtatgatgttgat
gattatacagtaaagggataaacatcacacagaggacctccctgcccgcc
agtactttacctatctagaggtaatcgctcttgaggatgtgtgcttctaa
agctttcttcttcattctatttgagtgtgtataatgcatacatacatgta
aatgtaatcacctaagccaaactggtagatagcccatgctttgcacatat
atggtgaacatcatttcctattaactagtagtcacttgccatactgaagt
actacataatatttcataatttaaggaattttctattcttgaacatctat
attctttattttttaactcctataagcaatactgaaatgaacattacata
tgactctgtttctcattcagtttttccttagatcgacttccaagtgggat
ctgctttagtcaaagtgagtggtgtgacctggtgctttagtcaaggtgaa
gtggtgtgacctggtgctttagtcaaggtgagtggtgtgacctgggtgct
ttagtcaaggtgagtggtgtgacctggtgtttagtcaaggtgagtggtgt
gacctgctgctttaatcaatgtagtggtgtacctgtgcttagtcaggtga
tggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34632887_34633603
seq2: B6Ng01-016N11.b_37_753

seq1  GAATTCTATCCAGACATGGCTTCTCCTACACAGGAATAGTGTGATATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCAGACATGGCTTCTCCTACACAGGAATAGTGTGATATGAG  50

seq1  GGGGTCTTGCTTTAAGACCAGCCAAGAGCCATTCTCATAAATGTACCTCT  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGGTCTTGCTTTAAGACCAGCCAAGTGCCATTCTCATAAATGTACCTCT  100

seq1  CTGCTGCCATAACACACACACACACACACACACACACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCATAACACACACACACACACACACACACACACACACACACACA  150

seq1  CAGACACACACACACACACACAGACACACATAGACACACACAGACACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACACACACACAGACACACATAGACACACACAGACACAGA  200

seq1  CACACATAGACACACACACACACACACACACATAGACACACACACACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGACACACACACACACACACACACATAGACACACACACACAGA  250

seq1  CACACATAGACACACACACACACACAGACACACATAGACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGACACACACACACACACAGACACACATAGACACACACACACA  300

seq1  CAGAGACACACATAGACACACACACACATACAAACAAGCATGTACATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACACATAGACACACACACACATACAAACAAGCATGTACATGCA  350

seq1  CAGACACACACATACAAACAAATATATATATATATATATATATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACATACAAACAAATATATATATATATATATATATATATATA  400

seq1  TATATATATATATATATACACACACACAGGCAAACACATACATAACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATACACACACACAGGCAAACACATACATAACACCT  450

seq1  ACACAAAATACACACATAAACATATACAAAGACACACACACACATAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATACACACATAAACATATACAAAGACACACACACACATAAGCA  500

seq1  CAGGTGCACAGACATTTGCACACATTTATACAAACACACATAAACCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCACAGACATTTGCACACATTTATACAAACACACATAAACCCAGT  550

seq1  AAACACACACAGCAACCAAAAGTCATACTACAGAAGGCACACATGTGTTT  600
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAACACACACAGCAACCAAAAGTCATACTACAGAATGCACACATGTGTTT  600

seq1  TCTTTCCACCAGATATTCACAGGATGTAGTCCACAAGGGCACTGGTTTAG  650
      ||||||||||| |||||||||||||||| | |||||||||||||||||||
seq2  TCTTTCCACCATATATTCACAGGATGTATTTCACAAGGGCACTGGTTTAG  650

seq1  AGTTGCATGAAGAAATACATTTTTGTGGTCCCTTATTCCCCCAGGTAACA  700
      ||||||| ||| |||||| ||||||||||||||||||||||| |||||||
seq2  AGTTGCAAGAAAAAATACTTTTTTGTGGTCCCTTATTCCCCCTGGTAACA  700

seq1  TACATAGTCTATACCCA  717
      |||||||||||||||||
seq2  TACATAGTCTATACCCA  717

seq1: chr6_34798788_34799849
seq2: B6Ng01-016N11.g_70_1126 (reverse)

seq1  CACACCACTCACCTTGACTAAAGCACCAGGTCACACCACTCACTTTGACT  50
      ||||||| ||||| ||||| ||||| ||||| |||||||| || |||| |
seq2  CACACCA-TCACC-TGACT-AAGCA-CAGGT-ACACCACT-ACATTGATT  44

seq1  AAAGCACCAGGTCACACCACTCACCTTGACTAAAGCACCAGGTCACACCA  100
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGCAGCAGGTCACACCACTCACCTTGACTAAA-CACCAGGTCACACCA  93

seq1  CTCACCTTGACTAAAGCA-CCAGGTCACACCACTCACCTTGACTAAAGCA  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCACCTTGACTAAAGCACCCAGGTCACACCACTCACCTTGACTAAAGCA  143

seq1  CCAGGTCACACCAC-TCACCTTGACTAAAGCACCAGGTCACACCACTCAC  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAGGTCACACCACTTCACCTTGACTAAAGCACCAGGTCACACCACTCAC  193

seq1  TTTGACTAAAGCAGATCCCACTTGGAAGTCGATCTAAGGAAAAACTGAAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAAAGCAGATCCCACTTGGAAGTCGATCTAAGGAAAAACTGAAT  243

seq1  GAGAAACAGAGTCATATGTAATGTTCATTTCAGTATTGCTTATAGGAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGAGTCATATGTAATGTTCATTTCAGTATTGCTTATAGGAGTT  293

seq1  AAAAAATAAAGAATATAGATGTTCAAGAATAGAAAATTCCTTAAATTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAGAATATAGATGTTCAAGAATAGAAAATTCCTTAAATTATG  343

seq1  AAATATTATGTAGTACTTCAGTATGGCAAGTGACTACTAGTTAATAGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATGTAGTACTTCAGTATGGCAAGTGACTACTAGTTAATAGGAA  393

seq1  ATGATGTTCACCATATATGTGCAAAGCATGGGCTATCTACCAGTTTGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTCACCATATATGTGCAAAGCATGGGCTATCTACCAGTTTGGCT  443

seq1  TAGGTGATTACATTTACATGTATGTATGCATTATACACACTCAAATAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATTACATTTACATGTATGTATGCATTATACACACTCAAATAGAA  493

seq1  TGAAGAAGAAAGCTTTAGAAGCACACATCCTCAAGAGCGATTACCTCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGAAAGCTTTAGAAGCACACATCCTCAAGAGCGATTACCTCTAG  543

seq1  ATAGGTAAAGTACTGGCGGGCAGGGAGGTCCTCTGTGTGATGTTTATCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAAGTACTGGCGGGCAGGGAGGTCCTCTGTGTGATGTTTATCCC  593

seq1  TTTACTGTATAATCATCAACATCATACAGAAGACAGGCAGTTAGTCGTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTATAATCATCAACATCATACAGAAGACAGGCAGTTAGTCGTAG  643

seq1  TTTCTAGCGGAGTGCTGTAGCTGTCATGACCAAGGAGAGAAAGACAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCGGAGTGCTGTAGCTGTCATGACCAAGGAGAGAAAGACAAGAA  693

seq1  AGAAGAGGGATGGGAAAGGAAAAGGGGGAAGGAGATAAAAGAAAAGAGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGATGGGAAAGGAAAAGGGGGAAGGAGATAAAAGAAAAGAGCG  743

seq1  AGGAGAGATGATAAAAGAAAGAAGGAGAAAGAGCAAAAGGAAAGAAATGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATGATAAAAGAAAGAAGGAGAAAGAGCAAAAGGAAAGAAATGG  793

seq1  CTGAGGGAGAGAAATTAAAAGTAATATTAAAAGTAGCCAAGCGACATCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAGAGAAATTAAAAGTAATATTAAAAGTAGCCAAGCGACATCTA  843

seq1  TAAAACTGAAAAGTACAACGTTGGAAAAAAGGAGTCCATCTGCCAGTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAAAGTACAACGTTGGAAAAAAGGAGTCCATCTGCCAGTATA  893

seq1  GCAGCGTGACAAAAGGAGCCGATGGCTTGAGAGAGAGATTACTTAGCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTGACAAAAGGAGCCGATGGCTTGAGAGAGAGATTACTTAGCTGA  943

seq1  CCAGCAGAGACAAGGAGATTAAATAGAGGGACTTGTGGGAGATAAAATAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAGACAAGGAGATTAAATAGAGGGACTTGTGGGAGATAAAATAC  993

seq1  AGTCTGTTTTCATGTCAGAGTTTCAGAAGGACAGATGGAATATGATAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTTCATGTCAGAGTTTCAGAAGGACAGATGGAATATGATAGAC  1043

seq1  CTGAAATGGAATTC  1062
      ||||||||||||||
seq2  CTGAAATGGAATTC  1057