BAC Information

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BAC

Clone NameB6Ng01-017A17
Chromosome6 (Build37)
Map Location 130,624,237 - 130,734,868
singlet/doubletdoublet
Overlap geneEG667798, EG625558
Upstream geneKlrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793
Downstream geneLOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017A17.bB6Ng01-017A17.g
ACCDH850837DH850838
length841706
definitionDH850837|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A17, 5' end.DH850838|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,624,237 - 130,625,077)(130,734,162 - 130,734,868)
sequence
gaattctattgtggactatatcaagaatgcactatgaatatcaacatttt
caccagaggagggtttgtaatcttaaagactcaaccacttccacacccgt
tggatccacttagatttttggtctgaaacagaagctatgttccttgtaat
acaagttattttatgcataaaacacacacacatatgtactcaggaaacct
aatggttttctctgctcaacacatacactgttcaaaactgttgtcttaga
atttttcaaaagcaatccaatttattttttttccattttttattaggtat
ttcgctcatttacatttgcaatgctataccaaaagtcccccatagccacc
caccccctctcccctacccacccactccccttttatggccctggcgttcc
cctgtactggggcatataaagtttgcgtgtccaatgggcctctctttcca
gtgatggccgactaggccatcttttgatattttgaaacataattctgttt
gcattagcaatgagacactggaaggtatgaatgaaatcacccagtataaa
ataaaccctaaatacaccaaggcaatagtaatagacagttctaaagtatt
tattgataattgaaacaaggagggatgagagattaaaatttactctttaa
aaagttcaaagactaagaacacagtaatcttcaaagagaatatatctcat
aaatactaacaatctcccatattaactataaacatatgcatcttgtttgt
attttgcatagtactacaaattattcttgttaataaccttcactttagaa
cactgtttattctatgattttaaaaatgaattctatacaat
gaattcattttttaaatcattaaataaacagtatactaaagtgtaaggat
tttaagcagaataactgtaataactatgcaaatccaattatgatgcatat
gtttatagattagtatggaagatttttaggatttattagatatattctct
ttgaaggttattgtgttcttagtcttttatctttttaaaagtaaatttta
atctctaatccctccttgttacaattatcaataaatactttagaactgtc
tactactattgccttggtgtatttaggattcattttatactgggtaattg
cattcataccttccagtgtctcattgataatgccaacagaaatatgtttc
aaaaaataaattggattgcttttgacaaattctaagacaacaattttgaa
gagtgtatgtgttgagcagagaaaaccatgaggtttcctgggtatgtatg
tgtgtgtgttttatgcataaaataacttgtattacaaggaacatagcttc
tgttccagggtaaaattctaagtggatccaatgggtggggaagatgtaga
agctttaacattacaaatcctcttctgggaaaaatgttgatatttcttac
acagtgttcattttgtccacaaaggaaattctcactctatctttatttat
atcacacgatgacacaaatttatgatgaaatggaaaggccatattgactt
agtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130624237_130625077
seq2: B6Ng01-017A17.b_38_878

seq1  GAATTCTATTGTGGACTATATCAAGAATGCACTATGAATATCAACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTGGACTATATCAAGAATGCACTATGAATATCAACATTTT  50

seq1  CACCAGAGGAGGGTTTGTAATCTTAAAGACTCAACCACTTCCACACCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGGAGGGTTTGTAATCTTAAAGACTCAACCACTTCCACACCCGT  100

seq1  TGGATCCACTTAGATTTTTGGTCTGAAACAGAAGCTATGTTCCTTGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCACTTAGATTTTTGGTCTGAAACAGAAGCTATGTTCCTTGTAAT  150

seq1  ACAAGTTATTTTATGCATAAAACACACACACATATGTACTCAGGAAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTATTTTATGCATAAAACACACACACATATGTACTCAGGAAACCT  200

seq1  AATGGTTTTCTCTGCTCAACACATACACTGTTCAAAACTGTTGTCTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTTCTCTGCTCAACACATACACTGTTCAAAACTGTTGTCTTAGA  250

seq1  ATTTTTCAAAAGCAATCCAATTTATTTTTTTTCCATTTTTTATTAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAAAGCAATCCAATTTATTTTTTTTCCATTTTTTATTAGGTAT  300

seq1  TTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCCCCCATAGCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCCCCCATAGCCACC  350

seq1  CACCCCCTCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCC  400

seq1  CCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCA  450

seq1  GTGATGGCCGACTAGGCCATCTTTTGATATTTTGAAACATAATTCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCCGACTAGGCCATCTTTTGATATTTTGAAACATAATTCTGTTT  500

seq1  GCATTAGCAATGAGACACTGGAAGGTATGAATGAAATCACCCAGTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGCAATGAGACACTGGAAGGTATGAATGAAATCACCCAGTATAAA  550

seq1  ATAAACCCTAAATACACCAAGGCAATAGTAATAGACAGTTCTAAAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCTAAATACACCAAGGCAATAGTAATAGACAGTTCTAAAGTATT  600

seq1  TATTGATAATTGAAACAAGGAGGGATGAGAGATTAAAATTTACTCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAATTGAAACAAGGAGGGATGAGAGATTAAAATTTACTCTTTAA  650

seq1  AAAGTTCAAAGACTAAGAACACAGTAATCTTCAAAGAGAATATATCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAAAGACTAAGAACACAGTAATCTTCAAAGAGAATATATCTCAT  700

seq1  AAATACTAACAATCTCCCATATTAACTATAAACATATGCATCTTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAACAATCTCCCATATTAACTATAAACATATGCATCTTGTTTGT  750

seq1  A-TTTGCATAGTTACTAC-AATTATTCTTGTTAAAAACCTTACACTTTAG  798
      | ||||||||| |||||| ||||||||||||||| |||||| ||||||||
seq2  ATTTTGCATAG-TACTACAAATTATTCTTGTTAATAACCTT-CACTTTAG  798

seq1  AACACTGTTTATTCAATGATTTAAAAAATGAATTCTATACAAT  841
      |||||||||||||| ||||||| ||||||||||||||||||||
seq2  AACACTGTTTATTCTATGATTTTAAAAATGAATTCTATACAAT  841

seq1: chr6_130734162_130734868
seq2: B6Ng01-017A17.g_60_765 (reverse)

seq1  TGCAATAAGTAAAATATGGCCTTTCCCTTTTCATCATAAATTTGTGACAT  50
      |||| |||||  |||||||||||| || |||||||||||||||||| |||
seq2  TGCACTAAGT-CAATATGGCCTTT-CCATTTCATCATAAATTTGTGTCAT  48

seq1  CCTGTGATTTGAAAAAAATAAGAGTGAGAA-TTCTATTGTGGACAATATG  99
      | |||||| | || |||   |||||||||| |||  |||||||||| |||
seq2  CGTGTGATATAAATAAAGATAGAGTGAGAATTTCCTTTGTGGACAAAATG  98

seq1  AACAATGTACTATAAACATCAACATTTTGACCAGAAGAGGATTTGTAATC  149
      |||| |||   | ||| |||||||||||  ||||||||||||||||||| 
seq2  AACACTGTGTAAGAAATATCAACATTTTTCCCAGAAGAGGATTTGTAATG  148

seq1  TTAAAGCTTCAACATCTTCCCCACCCATTGGATCCACTTAGAATTTTACC  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTTCTACATCTTCCCCACCCATTGGATCCACTTAGAATTTTACC  198

seq1  CTGGAACAGAAGCTATGTTCCTTGTAATACAAGTTATTTTATGCATAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGAAGCTATGTTCCTTGTAATACAAGTTATTTTATGCATAAAA  248

seq1  CACACACACATACATACCCAGGAAACCTCATGGTTTTCTCTGCTCAACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACATACCCAGGAAACCTCATGGTTTTCTCTGCTCAACAC  298

seq1  ATACACTCTTCAAAATTGTTGTCTTAGAATTTGTCAAAAGCAATCCAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCTTCAAAATTGTTGTCTTAGAATTTGTCAAAAGCAATCCAATT  348

seq1  TATTTTTTGAAACATATTTCTGTTGGCATTATCAATGAGACACTGGAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAAACATATTTCTGTTGGCATTATCAATGAGACACTGGAAGG  398

seq1  TATGAATGCAATTACCCAGTATAAAATGAATCCTAAATACACCAAGGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGCAATTACCCAGTATAAAATGAATCCTAAATACACCAAGGCAA  448

seq1  TAGTAGTAGACAGTTCTAAAGTATTTATTGATAATTGTAACAAGGAGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAGACAGTTCTAAAGTATTTATTGATAATTGTAACAAGGAGGGA  498

seq1  TTAGAGATTAAAATTTACTTTTAAAAAGATAAAAGACTAAGAACACAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATTAAAATTTACTTTTAAAAAGATAAAAGACTAAGAACACAATA  548

seq1  ACCTTCAAAGAGAATATATCTAATAAATCCTAAAAATCTTCCATACTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAAGAGAATATATCTAATAAATCCTAAAAATCTTCCATACTAAT  598

seq1  CTATAAACATATGCATCATAATTGGATTTGCATAGTTATTACAGTTATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACATATGCATCATAATTGGATTTGCATAGTTATTACAGTTATTC  648

seq1  TGCTTAAAATCCTTACACTTTAGTATACTGTTTATTTAATGATTTAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAATCCTTACACTTTAGTATACTGTTTATTTAATGATTTAAAAA  698

seq1  ATGAATTC  707
      ||||||||
seq2  ATGAATTC  706