BAC Information

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BAC

Clone NameB6Ng01-017F15
Chromosome10 (Build37)6 (Build37)
Map Location 53,688,325 - 53,689,451142,543,199 - 142,543,690
singlet/doubletsingletsinglet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F15.bB6Ng01-017F15.g
ACCDH851061DH851062
length1,131291
definitionDH851061|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F15, 5' end.DH851062|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,688,325 - 53,689,451)(142,543,199 - 142,543,690)
sequence
gaattcctacatctagatgaaaagcctccataagaacaaaagtggaggac
agagagactctcttttgctctaccattaggtagagtacagccagagttaa
attggtggtcatgaccctttatagtggtcttcagctttcaagcacccagt
tcccctctgtgaagtgagttctcctgcccttaccaggaaagagcctgggt
tttgtgtagaactgagagaaaatacagagtatctctgtatgattcatgtg
gcatgaaacagctctatgctcaaactgttaatatttttatgctcaaactg
ttaatattttttattgttatttcaggtctagtacatgagatccaggctaa
actgattacccaaatttttatttatttttaattgtctctattaattggca
ttgcaataagtttcaggcaataagtgttatattctttcccaggtccaaca
cacaacctcttgcctaattactatagtacaaatctaatcgctgtaaaggt
gtgtgttctagccataaatactcacatagacctatttcctagttattagg
ttattctaattctgctgtctaactcggtcactttatgacagtgattctca
acttccccagtgttctgaaataacttgagaagtttttaaagtcagcctcc
tcatccactgtcccgtctttaagtcgatttggagtagggtccctgtgctt
aagagcaggcatcctaagggcgagtacagcttggtttcttctcagttgcc
ttcggggatttttctctatttatgcacaatcagttcagttactgaaatat
acaaataccagaaaatgagtgcctaaaattccaactttagtacaagcaaa
cgttttgaatgtcacagcgtgtgtgggcctggagagcttgttcaagtgct
gtatccatatgcccagcttgtggttcgatggttctagtgagatgcggtaa
cctgctttttctagcaggttcagactgattcagaagttgctgctgttggt
ccaagcccagaactctgggaaacaaccgtcatggggaggaatgactcact
cagtagcacttaggaaagaacggctcaaagctgcctccatacggtggcca
ttccggacattcgcagagagaaggggagtgt
tttgtttagctctgagccccatttttaatggggttatttgattttctgga
gtccacattctttagttctttatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
gatatatatatatatatatacatacacacacagagagagagagagacaca
cacacagacatagatatagagagagagagatatagggggggggggggggg
ggggggggcgggcggcggccgcgcgcggggggggggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53688325_53689451
seq2: B6Ng01-017F15.b_46_1176 (reverse)

seq1  ACACTCCCC-TCTCTCTGCGAATGTCGGGAATGGCCACTGTATGGA-GCA  48
      ||||||||| |||||||||||||||| ||||||||||| ||||||| |||
seq2  ACACTCCCCTTCTCTCTGCGAATGTCCGGAATGGCCACCGTATGGAGGCA  50

seq1  GCTCTGAGACGTTTCTTTCTAAGTGCTACTGAGTGAAGTCATTCCTCACC  98
      ||| |||| ||||  || ||||||||||||||||| ||||||||||| ||
seq2  GCTTTGAGCCGTTCTTTCCTAAGTGCTACTGAGTG-AGTCATTCCTCCCC  99

seq1  ATGACGGTTGTTT-CCAGAG-TCTGGGCTTGGACCAACAGCAGCAACTTC  146
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  ATGACGGTTGTTTCCCAGAGTTCTGGGCTTGGACCAACAGCAGCAACTTC  149

seq1  TGAATCAGTCTGAACCTGGTTAGAAAAGCAGGTTACCGCATCTCACTAGA  196
      |||||||||||||||||| |   |||||||||||||||||||||||||||
seq2  TGAATCAGTCTGAACCTGCTAGAAAAAGCAGGTTACCGCATCTCACTAGA  199

seq1  ACCATCGAACCACAAGCTGGGCATATGGATACAGCACTTGAACAAGCTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCGAACCACAAGCTGGGCATATGGATACAGCACTTGAACAAGCTCT  249

seq1  CCAGG-CCACACACGCTGTGACATTCAAAACGTTTGCTTGTACTAAAGTT  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCACACACGCTGTGACATTCAAAACGTTTGCTTGTACTAAAGTT  299

seq1  GGAATTTTAGGCACTCATTTTCTGGTATTTGTATATTTCAGTAACTGAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTAGGCACTCATTTTCTGGTATTTGTATATTTCAGTAACTGAAC  349

seq1  TGATTGTGCATAAATAGAGAAAAATCCCCGAAGGCAACTGAGAAGAAACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGCATAAATAGAGAAAAATCCCCGAAGGCAACTGAGAAGAAACC  399

seq1  AAGCTGTACTCGCCCTTAGGATGCCTGCTCTTAAGCACAGGGACCCTACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTACTCGCCCTTAGGATGCCTGCTCTTAAGCACAGGGACCCTACT  449

seq1  CCAAATCGACTTAAAGACGGGACAGTGGATGAGGAGGCTGACTTTAAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCGACTTAAAGACGGGACAGTGGATGAGGAGGCTGACTTTAAAAA  499

seq1  CTTCTCAAGTTATTTCAGAACACTGGGGAAGTTGAGAATCACTGTCATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGTTATTTCAGAACACTGGGGAAGTTGAGAATCACTGTCATAA  549

seq1  AGTGACCGAGTTAGACAGCAGAATTAGAATAACCTAATAACTAGGAAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCGAGTTAGACAGCAGAATTAGAATAACCTAATAACTAGGAAATA  599

seq1  GGTCTATGTGAGTATTTATGGCTAGAACACACACCTTTACAGCGATTAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATGTGAGTATTTATGGCTAGAACACACACCTTTACAGCGATTAGA  649

seq1  TTTGTACTATAGTAATTAGGCAAGAGGTTGTGTGTTGGACCTGGGAAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTATAGTAATTAGGCAAGAGGTTGTGTGTTGGACCTGGGAAAGA  699

seq1  ATATAACACTTATTGCCTGAAACTTATTGCAATGCCAATTAATAGAGACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACACTTATTGCCTGAAACTTATTGCAATGCCAATTAATAGAGACA  749

seq1  ATTAAAAATAAATAAAAATTTGGGTAATCAGTTTAGCCTGGATCTCATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAAATAAAAATTTGGGTAATCAGTTTAGCCTGGATCTCATGT  799

seq1  ACTAGACCTGAAATAACAATAAAAAATATTAACAGTTTGAGCATAAAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCTGAAATAACAATAAAAAATATTAACAGTTTGAGCATAAAAAT  849

seq1  ATTAACAGTTTGAGCATAGAGCTGTTTCATGCCACATGAATCATACAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGTTTGAGCATAGAGCTGTTTCATGCCACATGAATCATACAGAG  899

seq1  ATACTCTGTATTTTCTCTCAGTTCTACACAAAACCCAGGCTCTTTCCTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGTATTTTCTCTCAGTTCTACACAAAACCCAGGCTCTTTCCTGG  949

seq1  TAAGGGCAGGAGAACTCACTTCACAGAGGGGAACTGGGTGCTTGAAAGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCAGGAGAACTCACTTCACAGAGGGGAACTGGGTGCTTGAAAGCT  999

seq1  GAAGACCACTATAAAGGGTCATGACCACCAATTTAACTCTGGCTGTACTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCACTATAAAGGGTCATGACCACCAATTTAACTCTGGCTGTACTC  1049

seq1  TACCTAATGGTAGAGCAAAAGAGAGTCTCTCTGTCCTCCACTTTTGTTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATGGTAGAGCAAAAGAGAGTCTCTCTGTCCTCCACTTTTGTTCT  1099

seq1  TATGGAGGCTTTTCATCTAGATGTAGGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  TATGGAGGCTTTTCATCTAGATGTAGGAATTC  1131

seq1: chr6_142543199_142543690
seq2: B6Ng01-017F15.g_160_365 (reverse)

seq1  CCACCCCCCCCCCCCCCGCATGTCACTTACAGCTATGGTTACGACCGTGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  GATCCGCAAAGGCTGTCATGACTACTTTCTGCAAAATGTTTTCCTGCCAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAAAGAGAAAAGTTTCAATTTTCAGGTGCCTACTCTCTCTTGCTACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTTTATAGCCCAGGGTAATATTTTCACTGTCCAGTTCCTTCTGAGCA  200
                                                      ||
seq2  -----------------------------------------------CCA  3

seq1  CGCTCGCTCCAAGCCTTCTGCG-GAGGTTGACAGAAAGTATAGCCAGTGT  249
      | | | | ||       | ||| | ||  | |          ||| |   
seq2  CCCCCCCCCC-------CCGCGCGCGGCCGCC----------GCCCGCCC  36

seq1  CAGGCTGTGTTCTCGAAATGCCTTCCAAATGCAAGAAATGTCAGTGGTCT  299
      |   |      | |      ||  ||  ||       || ||     |||
seq2  CCCCC------CCCCCCCCCCCCCCCCTAT-------ATCTC-----TCT  68

seq1  CAAGTAAAAAGGGGACCATGAGAATGGAGGAAGAGATGTTCTTTTTTTAA  349
      |                                      ||| |      
seq2  C--------------------------------------TCTCT------  74

seq1  AAAAAGATTTATTTATAACAATTTTAATCT-TGTGTGTACTGTGTGTGTG  398
          | || ||| | |     | |   ||| | | | | |||||||||| 
seq2  ----ATATCTATGTCTGTGTGTGTGTCTCTCTCTCTCT-CTGTGTGTGTA  119

seq1  TGTATATATATATATATATATATAGTACATATATATATATATATATATAT  448
      |||||||||||||||||||||        |||||||||||||||||||||
seq2  TGTATATATATATATATATAT-------CTATATATATATATATATATAT  162

seq1  ATATATATATATATATATATATATATATATATATATATATATAT  492
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATAT  206