BAC Information

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BAC

Clone NameB6Ng01-017H08
Chromosome6 (Build37)
Map Location 53,543,400 - 53,675,708
singlet/doubletdoublet
Overlap geneCreb5
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H08.bB6Ng01-017H08.g
ACCDH851138DH851139
length955991
definitionDH851138|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H08, 5' end.DH851139|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,543,400 - 53,544,385)(53,674,719 - 53,675,708)
sequence
gaattccaacaccaactcctaatggcctggggtggagagtgtctcagata
tgacctccctggagatgtacaggaggggctcttagcctcaagattccaga
agagattaggtaaaggcattagagagagcctcacagaaatgaatcccatg
aatcccacaggcccaggaaggccagccagagacttttgggccttctctgg
cctctacttccaatggtgctgcttggagctgatgccagtcaggggcaaac
ttcagttgtaaatttggagtctaggtgcggggtcttgtgccaactgcaga
ttccaccagaaatgactcaattaaaagatactgactgagaagctgcaaag
ccaggagaaacctaagcagagctgctggcaggcagagagcttgggtgggg
gtggggccctgcctgctgtctaggaacccagggagctctgggcctccaag
gaatctgcaggcaggagtagtggtgactgccgccatgaattattcatgtc
tgaaggatgagaaaagcagcaatctcacgtcgatggctaggctcatcctc
ataggcctgcctattggcccttaggatgccaggaggcttattaaaaggaa
gaagttgtgcttagagacctgcctctagaaagaaaaggatttctccccgc
cagtaagaagtgcatcctgctttgagccacattcctccagtctgtggttc
tgcttttgcttgccttttcaaagtgtgactttatgaatgatcatcgactg
tggagctattgactgattgaggagctgttatcgtcctgtgtgagcagccg
acctgtgaataaagctaaagcgcttaggaatttaggatcttttataaaaa
aaaatatatattttcaaagaactgttagctctttacgagggaaaaaatca
tgtttggaaatggattccccctacccccgctctaatagtacatcagaaat
tgaat
gaattctaggtgatgacggtgtttctccaggggagagcaagtggtttaag
atggctcactttggagaggaaaaagatggttcagtgaatgtgactggtga
gcaagcaagagggctagaatccaaatccccaggccccacataagtgctag
gtaggcatggcagcctgcttttgatcccagtctcggaaggcagggaattc
ttccctctaccacttagctctttggtttttctgtccccaaaagcttaatc
actttggttatcactttctttaggtgtaaaatcaaaaataaaataaaata
ttttggatgtggtaaaagtaaattagatgctgctcatagatagtatacag
ttagtgcctcccagtgtctggtgctgagtggttgtgttgctgaagctact
cagaacctaaggctgtccttagccctggctgtgcactgtcagctcccagt
gcctagcagacactaacccccagcccccagcaaccatccaactcccaatg
tccataagttcaacattgatggcatgcagtctgtgtctcttgtgtcctct
gaacactttgcttcatatgccttcctggttcatctgcactgttggaaatg
acaccagacgcttcagcctctgcactagaatgcctgagggtggaattacc
tgtggtgtgcgttctactaggcagctaaagcagagatttactggtttaag
gacatgctctagggatagggtaatgggttagaatcaaatgcctctaagaa
catagcacgccaaccagaacactttgtgtttttatgctggtgtagagtgg
gtgacaggaatcctggggtatgagttctcacccacccacacttgttcaaa
cattatttactcaatcccttttggtgcccaccttctagaaaattgctagg
cttctgatgtgagcgcgagagagaacacttctgagagatggtgccttact
ataatggttgcttgaaagaatccaacgtgcaaaacacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_53543400_53544385
seq2: B6Ng01-017H08.b_45_999

seq1  GAATTCCAACACCAACTCCTAATGGCCTGGGGTGGAGAGTGTCTCAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACCAACTCCTAATGGCCTGGGGTGGAGAGTGTCTCAGATA  50

seq1  TGACCTCCCTGGAGATGTACAGGAGGGGCTCTTAGCCTCAAGATTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCCTGGAGATGTACAGGAGGGGCTCTTAGCCTCAAGATTCCAGA  100

seq1  AGAGATTAGGTAAAGGCATTAGAGAGAGCCTCACAGAAATGAATCCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAGGTAAAGGCATTAGAGAGAGCCTCACAGAAATGAATCCCATG  150

seq1  AATCCCACAGGCCCAGGAAGGCCAGCCAGAGACTTTTGGGCCTTCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACAGGCCCAGGAAGGCCAGCCAGAGACTTTTGGGCCTTCTCTGG  200

seq1  CCTCTACTTCCAATGGTGCTGCTTGGAGCTGATGCCAGTCAGGGGCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTTCCAATGGTGCTGCTTGGAGCTGATGCCAGTCAGGGGCAAAC  250

seq1  TTCAGTTGTAAATTTGGAGTCTAGGTGCGGGGTCTTGTGCCAACTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGTAAATTTGGAGTCTAGGTGCGGGGTCTTGTGCCAACTGCAGA  300

seq1  TTCCACCAGAAATGACTCAATTAAAAGATACTGACTGAGAAGCTGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCAGAAATGACTCAATTAAAAGATACTGACTGAGAAGCTGCAAAG  350

seq1  CCAGGAGAAACCTAAGCAGAGCTGCTGGCAGGCAGAGAGCTTGGGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAACCTAAGCAGAGCTGCTGGCAGGCAGAGAGCTTGGGTGGGG  400

seq1  GTGGGGCCCTGCCTGCTGTCTAGGAACCCAGGGAGCTCTGGGCCTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCCTGCCTGCTGTCTAGGAACCCAGGGAGCTCTGGGCCTCCAAG  450

seq1  GAATCTGCAGGCAGGAGTAGTGGTGACTGCCGCCATGAATTATTCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCAGGCAGGAGTAGTGGTGACTGCCGCCATGAATTATTCATGTC  500

seq1  TGAAGGATGAGAAAAGCAGCAATCTCACGTCGATGGCTAGGCTCATCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATGAGAAAAGCAGCAATCTCACGTCGATGGCTAGGCTCATCCTC  550

seq1  ATAGGCCTGCCTATTGGCCCTTAGGATGCCAGGAGGCTTATTAAAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCTGCCTATTGGCCCTTAGGATGCCAGGAGGCTTATTAAAAGGAA  600

seq1  GAAGTTGTGCTTAGAGACCTGCCTCTAGAAAG-AAAGGATTTCTCCCCGC  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAGTTGTGCTTAGAGACCTGCCTCTAGAAAGAAAAGGATTTCTCCCCGC  650

seq1  CAGTAAGAAGTGCATCCTGCTTTGAGCCACATTCCTCCAGTCTGTGGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAAGTGCATCCTGCTTTGAGCCACATTCCTCCAGTCTGTGGTTC  700

seq1  TGCTTTTGCTTGCCTTTTCAAAGTGTGACTTTATGAATGATCATCGACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGCTTGCCTTTTCAAAGTGTGACTTTATGAATGATCATCGACTG  750

seq1  TGGAGCTATTGACTGATTGAGGAGCTGTTATCGTCCTGTGTGAGCAGCCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTATTGACTGATTGAGGAGCTGTTATCGTCCTGTGTGAGCAGCCG  800

seq1  ACCTGTGAATAAAGCTAAAGCGCTTAGGAATTTAGGATCTTTTATAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAATAAAGCTAAAGCGCTTAGGAATTTAGGATCTTTTATAAAAA  850

seq1  AAAATATATATTTACAAAGAACTGTTAGCTCTTTACGAGGGAAAAAAATC  899
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  AAAATATATATTTTCAAAGAACTGTTAGCTCTTTACGAGGG-AAAAAATC  899

seq1  ATGTTTGGAAATGGATTCCCCCTACCCCCGCTCTAAATAGTACATCAGAA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTTTGGAAATGGATTCCCCCTACCCCCGCTCT-AATAGTACATCAGAA  948

seq1  A-TGAATCCAGCCGTGTTTGGGGTTAACTCAAATGAAT  986
      | |||||                               
seq2  ATTGAAT-------------------------------  955

seq1: chr6_53674719_53675708
seq2: B6Ng01-017H08.g_66_1056 (reverse)

seq1  CTGTGTG-TATGCACGTTGGGTTCTCTCAAGCAGCCGTTATAGT-AGGCA  48
      ||||||| | |||||||||| |||| ||||||| || ||||||| |||||
seq2  CTGTGTGTTTTGCACGTTGGATTCTTTCAAGCAACCATTATAGTAAGGCA  50

seq1  CCATCTCCTCAGGAAGTGTTCTCTCTCGCGCTCACCTCAGAAGCCCTAGC  98
      |||||| |||| ||||||||||||||||||||||| ||||||| ||||||
seq2  CCATCT-CTCA-GAAGTGTTCTCTCTCGCGCTCACATCAGAAG-CCTAGC  97

seq1  -ACTTTCTAGTATGGTTGGCACCCAAAGGGACTGAGTAAATATTGTTTGA  147
       | ||||||| | ||| |||||| ||||||| |||||||||| |||||||
seq2  AATTTTCTAG-AAGGTGGGCACCAAAAGGGATTGAGTAAATAATGTTTGA  146

seq1  ACAAGTGTGTGTGGGTGAGAACTCATA-CCCAGGATTCCTGTCACCCACT  196
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  ACAAGTGTGGGTGGGTGAGAACTCATACCCCAGGATTCCTGTCACCCACT  196

seq1  CTACACCAGCAT-AAAACACAAAGTGTTCTGGTTGGCGTGCTATGTTCTT  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTACACCAGCATAAAAACACAAAGTGTTCTGGTTGGCGTGCTATGTTCTT  246

seq1  AGAGGCATTTGATTCTAACCCATTACCCTATCCCTAGAGCATGTCCTTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATTTGATTCTAACCCATTACCCTATCCCTAGAGCATGTCCTTAA  296

seq1  ACCAGTAAATCTCTGCTTTAGCTGCCTAGTAGAACGCACACCACAGGTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAAATCTCTGCTTTAGCTGCCTAGTAGAACGCACACCACAGGTAA  346

seq1  TTCCACCCTCAGGCATTCTAGTGCAGAGGCTGAAGCGTCTGGTGTCATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCTCAGGCATTCTAGTGCAGAGGCTGAAGCGTCTGGTGTCATTT  396

seq1  CCAACAGTGCAGATGAACCAGGAAGGCATATGAAGCAAAGTGTTCAGAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTGCAGATGAACCAGGAAGGCATATGAAGCAAAGTGTTCAGAGG  446

seq1  ACACAAGAGACACAGACTGCATGCCATCAATGTTGAACTTATGGACATTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGACACAGACTGCATGCCATCAATGTTGAACTTATGGACATTG  496

seq1  GGAGTTGGATGGTTGCTGGGGGCTGGGGGTTAGTGTCTGCTAGGCACTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGATGGTTGCTGGGGGCTGGGGGTTAGTGTCTGCTAGGCACTGG  546

seq1  GAGCTGACAGTGCACAGCCAGGGCTAAGGACAGCCTTAGGTTCTGAGTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACAGTGCACAGCCAGGGCTAAGGACAGCCTTAGGTTCTGAGTAG  596

seq1  CTTCAGCAACACAACCACTCAGCACCAGACACTGGGAGGCACTAACTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAACACAACCACTCAGCACCAGACACTGGGAGGCACTAACTGTA  646

seq1  TACTATCTATGAGCAGCATCTAATTTACTTTTACCACATCCAAAATATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTATGAGCAGCATCTAATTTACTTTTACCACATCCAAAATATTT  696

seq1  TATTTTATTTTTGATTTTACACCTAAAGAAAGTGATAACCAAAGTGATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTTGATTTTACACCTAAAGAAAGTGATAACCAAAGTGATTA  746

seq1  AGCTTTTGGGGACAGAAAAACCAAAGAGCTAAGTGGTAGAGGGAAGAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGGGGACAGAAAAACCAAAGAGCTAAGTGGTAGAGGGAAGAATT  796

seq1  CCCTGCCTTCCGAGACTGGGATCAAAAGCAGGCTGCCATGCCTACCTAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTTCCGAGACTGGGATCAAAAGCAGGCTGCCATGCCTACCTAGC  846

seq1  ACTTATGTGGGGCCTGGGGATTTGGATTCTAGCCCTCTTGCTTGCTCACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTGGGGCCTGGGGATTTGGATTCTAGCCCTCTTGCTTGCTCACC  896

seq1  AGTCACATTCACTGAACCATCTTTTTCCTCTCCAAAGTGAGCCATCTTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATTCACTGAACCATCTTTTTCCTCTCCAAAGTGAGCCATCTTAA  946

seq1  ACCACTTGCTCTCCCCTGGAGAAACACCGTCATCACCTAGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGCTCTCCCCTGGAGAAACACCGTCATCACCTAGAATTC  991