BAC Information

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BAC

Clone NameB6Ng01-017J16
Chromosome6 (Build37)
Map Location 35,798,711 - 35,958,790
singlet/doubletdoublet
Overlap geneLOC100039327
Upstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J16.bB6Ng01-017J16.g
ACCDH851244DH851245
length948888
definitionDH851244|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J16, 5' end.DH851245|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,957,836 - 35,958,790)(35,798,711 - 35,799,593)
sequence
gaattcatgattgaaagttgcttacagattttcctaattgttcttatcta
tattttggttccacaagagtccgtaaaaaggcagcccagttatgctagag
catcaagtggagagtaagaactcttaggtcacactcaattcattttttta
accaaaataatcactgatatttgcaacaccaattgaattgaaaaatagaa
gatttaatgtgtgcctggaggttaccaaaatagccaaatcatgacacagc
caagagcgttatttctgtcagtgcaaaaatggattcagataaactgggga
gtaatttgctttgttatttggtcatcatctattatgatactgaaatgaaa
attaaagacagaacatttgctttagtgttcacatacagagcctgaaggat
ccactgcaggtcagcactgtttctccagggtttggaaaaaggatcaatta
tctgttaaaatataagtaaacataggtggcatgcatttccagagtggaga
catgcttctggggtttgcaaagtgttttcacagtggagctcctcgacagt
tagtagcatcaattcttgtggtagcaattattccctatttgaacagcgtg
gttacatccaaggccaagcatcttgataatgggacttgacttccccatta
ctctccaggtcatagtcagttctctttggcaagctaataccaaaagccca
aagaaatttcaagaacgatttcattcggcagacatctaagctttacgttt
ttgttatttttcctgtcttgaaatcacagactgggtggtttgggttgtga
tcttttaactaagttctgaaaaactgtgtgtccttctctgcttagatgtg
aaacacaatcacctttatgaagcctcagcactaccatgcttcagactgac
tgaaagctgtctggctgctaacactgggttccagatgagatctctacc
gaattcaaatgagatgtatggagtctagtggagaagacaggaaagattta
ttataaagtagcatggcttatccttaagggtgagcctgaagaggtgccaa
ggagccatcactgcgtctgtattttaggcttgctgaggctaaagtctttg
aatggacagatttttcgagaagcgttttctctccaggttactggcatgcc
catttgaatagactctaaaagtaggggtgacatcatggctttgttcctta
tcagaagagaaaatgatctcatgaagtataaggtttctggagccaggttt
agatcattattgatgaactaccttctggtagttcaggatgttacatgttc
tcccagggtctgaattcccatttctgtgatgggtaataagagacccactg
ttccagtctgtggtttaacaagctgttggatgtgaggaagaggtttagct
ctgtcacactctaatcctgctcatatttgtttagctacctggtaaaatgc
tttttttgaaataatgcatccataataataaataatggttcatttacatg
tatgtgtgtgtgtgtgtgttcatatatatctgaatgtatctttggaagct
agaagagggtatcagatcccctgaaactagagttacaggtgattgttgtg
tgtcatcctacataggttctaggaactgaactctggacttttgcaagagc
aagacgtgtgcttaacagctaagccatctctccaggcctgtcatttactg
ggcatattataatcactgctcttcaggtaacctttaaacccagtaaaccc
ggtaatcccttacataaagtatcaggtgcttctccagagatcttacctac
tgagatatggtgaagagggagacatttattttgtttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35957836_35958790
seq2: B6Ng01-017J16.b_44_991 (reverse)

seq1  GGTAGAGATCTTCATCTCGGAACCCCAGTGCTAGGCAGCCAGACAGCTCT  50
      |||||||||| |||||| |||| ||||||| || ||||||||||||  ||
seq2  GGTAGAGATC-TCATCT-GGAA-CCCAGTGTTA-GCAGCCAGACAG--CT  44

seq1  GTCAGTCAGTTCTGGAAGCATGGTAGTGCTGAGGCTTCCTAAAGGTGA-T  99
       |||||||| ||| |||||||||||||||||||||||| ||||||||| |
seq2  TTCAGTCAG-TCT-GAAGCATGGTAGTGCTGAGGCTTCATAAAGGTGATT  92

seq1  GTGTTTCACATCTAAGCAGAGAAGGACACACAGTTTTTTCAGAACCTTAG  149
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GTGTTTCACATCTAAGCAGAGAAGGACACACAG-TTTTTCAGAA-CTTAG  140

seq1  TT-AAAGATCACAACCCAAACCACCCAGTCTGTGATTTCAAGACAGG-AA  197
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAAAAGATCACAACCCAAACCACCCAGTCTGTGATTTCAAGACAGGAAA  190

seq1  AATAACAAAAACGTAAAGCTTAGATGTCTGCCGAATGAAATCGTTCTTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAACGTAAAGCTTAGATGTCTGCCGAATGAAATCGTTCTTGA  240

seq1  AATTTCTTTGGGCTTTTGGTATTAGCTTGCCAAAGAGAACTGACTATGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTGGGCTTTTGGTATTAGCTTGCCAAAGAGAACTGACTATGAC  290

seq1  CTGGAGAGTAATGGGGAAGTCAAGTCCCATTATCAAGATGCTTGGCCTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGTAATGGGGAAGTCAAGTCCCATTATCAAGATGCTTGGCCTTG  340

seq1  GATGTAACCACGCTGTTCAAATAGGGAATAATTGCTACCACAAGAATTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAACCACGCTGTTCAAATAGGGAATAATTGCTACCACAAGAATTGA  390

seq1  TGCTACTAACTGTCGAGGAGCTCCACTGTGAAAACACTTTGCAAACCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTAACTGTCGAGGAGCTCCACTGTGAAAACACTTTGCAAACCCCA  440

seq1  GAAGCATGTCTCCACTCTGGAAATGCATGCCACCTATGTTTACTTATATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGTCTCCACTCTGGAAATGCATGCCACCTATGTTTACTTATATT  490

seq1  TTAACAGATAATTGATCCTTTTTCCAAACCCTGGAGAAACAGTGCTGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGATAATTGATCCTTTTTCCAAACCCTGGAGAAACAGTGCTGACC  540

seq1  TGCAGTGGATCCTTCAGGCTCTGTATGTGAACACTAAAGCAAATGTTCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGATCCTTCAGGCTCTGTATGTGAACACTAAAGCAAATGTTCTG  590

seq1  TCTTTAATTTTCATTTCAGTATCATAATAGATGATGACCAAATAACAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTTTCATTTCAGTATCATAATAGATGATGACCAAATAACAAAG  640

seq1  CAAATTACTCCCCAGTTTATCTGAATCCATTTTTGCACTGACAGAAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTACTCCCCAGTTTATCTGAATCCATTTTTGCACTGACAGAAATAA  690

seq1  CGCTCTTGGCTGTGTCATGATTTGGCTATTTTGGTAACCTCCAGGCACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTGGCTGTGTCATGATTTGGCTATTTTGGTAACCTCCAGGCACAC  740

seq1  ATTAAATCTTCTATTTTTCAATTCAATTGGTGTTGCAAATATCAGTGATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCTTCTATTTTTCAATTCAATTGGTGTTGCAAATATCAGTGATT  790

seq1  ATTTTGGTTAAAAAAATGAATTGAGTGTGACCTAAGAGTTCTTACTCTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTTAAAAAAATGAATTGAGTGTGACCTAAGAGTTCTTACTCTCC  840

seq1  ACTTGATGCTCTAGCATAACTGGGCTGCCTTTTTACGGACTCTTGTGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGCTCTAGCATAACTGGGCTGCCTTTTTACGGACTCTTGTGGAA  890

seq1  CCAAAATATAGATAAGAACAATTAGGAAAATCTGTAAGCAACTTTCAATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATATAGATAAGAACAATTAGGAAAATCTGTAAGCAACTTTCAATC  940

seq1  ATGAATTC  955
      ||||||||
seq2  ATGAATTC  948

seq1: chr6_35798711_35799593
seq2: B6Ng01-017J16.g_68_955

seq1  GAATTCAAATGAGATGTATGGAGTCTAGTGGAGAAGACAGGAAAGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAGATGTATGGAGTCTAGTGGAGAAGACAGGAAAGATTTA  50

seq1  TTATAAAGTAGCATGGCTTATCCTTAAGGGTGAGCCTGAAGAGGTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTAGCATGGCTTATCCTTAAGGGTGAGCCTGAAGAGGTGCCAA  100

seq1  GGAGCCATCACTGCGTCTGTATTTTAGGCTTGCTGAGGCTAAAGTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATCACTGCGTCTGTATTTTAGGCTTGCTGAGGCTAAAGTCTTTG  150

seq1  AATGGACAGATTTTTCGAGAAGCGTTTTCTCTCCAGGTTACTGGCATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGATTTTTCGAGAAGCGTTTTCTCTCCAGGTTACTGGCATGCC  200

seq1  CATTTGAATAGACTCTAAAAGTAGGGGTGACATCATGGCTTTGTTCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATAGACTCTAAAAGTAGGGGTGACATCATGGCTTTGTTCCTTA  250

seq1  TCAGAAGAGAAAATGATCTCATGAAGTATAAGGTTTCTGGAGCCAGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAAAATGATCTCATGAAGTATAAGGTTTCTGGAGCCAGGTTT  300

seq1  AGATCATTATTGATGAACTACCTTCTGGTAGTTCAGGATGTTACATGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTATTGATGAACTACCTTCTGGTAGTTCAGGATGTTACATGTTC  350

seq1  TCCCAGGGTCTGAATTCCCATTTCTGTGATGGGTAATAAGAGACCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGTCTGAATTCCCATTTCTGTGATGGGTAATAAGAGACCCACTG  400

seq1  TTCCAGTCTGTGGTTTAACAAGCTGTTGGATGTGAGGAAGAGGTTTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCTGTGGTTTAACAAGCTGTTGGATGTGAGGAAGAGGTTTAGCT  450

seq1  CTGTCACACTCTAATCCTGCTCATATTTGTTTAGCTACCTGGTAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACTCTAATCCTGCTCATATTTGTTTAGCTACCTGGTAAAATGC  500

seq1  TTTTTTTGAAATAATGCATCCATAATAATAAATAATGGTTCATTTACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAAATAATGCATCCATAATAATAAATAATGGTTCATTTACATG  550

seq1  TATGTGTGTGTGTGTGTGTTCATATATATCTGAATGTATCTTTGGAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTGTGTTCATATATATCTGAATGTATCTTTGGAAGCT  600

seq1  AGAAGAGGGTATCAGATCCCCTGAAACTAGAGTTACAGGTGATTGTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGTATCAGATCCCCTGAAACTAGAGTTACAGGTGATTGTTGTG  650

seq1  TGTCATCCTACATAGGTTCTAGGAACTGAACTCTGGACCTTTGCAAGAGC  700
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTCATCCTACATAGGTTCTAGGAACTGAACTCTGGACTTTTGCAAGAGC  700

seq1  AAGACGTGTGCTTAACAGCTAAGCCATCTCTCCAGGCCTGTCATTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTGTGCTTAACAGCTAAGCCATCTCTCCAGGCCTGTCATTTACTG  750

seq1  GGCATATTATAATCACTGCTCTTCAGGTAACCTTTAAACCCAGTAAA-CC  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCATATTATAATCACTGCTCTTCAGGTAACCTTTAAACCCAGTAAACCC  800

seq1  GGCAATCCCTTACAT-AAGTATCA-GTGCTTCTCCCAGAGATC-TACCTA  846
      || |||||||||||| |||||||| |||||||| ||||||||| ||||||
seq2  GGTAATCCCTTACATAAAGTATCAGGTGCTTCT-CCAGAGATCTTACCTA  849

seq1  CTGAGATAT-GTGAAGA-GGAGACATTTATTTTGGTTTA  883
      ||||||||| ||||||| |||||||||||||||| ||||
seq2  CTGAGATATGGTGAAGAGGGAGACATTTATTTTGTTTTA  888