BAC Information

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BAC

Clone NameB6Ng01-017J23
Chromosome6 (Build37)11 (Build37)
Map Location 134,620,110 - 134,621,22593,922,337 - 93,922,577
singlet/doubletsingletsinglet
Overlap geneLoh12cr1
Upstream geneLOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660, Bcl2l14, Lrp6, Mansc1
Downstream geneLOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J23.bB6Ng01-017J23.g
ACCDH851256DH851257
length1,117862
definitionDH851256|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J23, 5' end.DH851257|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,620,110 - 134,621,225)(93,922,337 - 93,922,577)
sequence
gaattcattcctacaacatgcccctgagagccccagaaggaaatgttagt
gccgtgccctgtcacagttccatggttgggttccttgtgcgcatcccaga
atacgacagtgtcaggcaaagcgtagatgatgcttagactgtgaatggtg
ccttcccagccctgcggtcaagtcagggcgtggggcctcggagacctagc
aaaggaggagctgagcctgacacagtctgctgctcccatcacggctggcc
acttagacaccagaaccacagtccctagtcagctctttaaactttatatt
acttaatgtgtagagtaaaatgttggccttcaaaagcatttaaacggtgc
cttgctgaagtatatagcagaaagtagttataatacatggttgctattct
taccttttcttttttccctcccataagtaacaaatgatctagaatagtct
ggggcttacttttttatttttcttttatctttttggatcatctattagct
ctttcttacaatgatgaaacagaaatatcttttgtggggtgtaaacatga
tcaagtcgggctggcgaggtggctcagtgattaagagcactgactgctat
tcccgaggtcctgagttcaaatcccagcaaccacatggtggcttacaacc
atctgtaatgagatctgacgccctcttccggtgtgtctgaagacaactac
agtgtaattacatataataaaaaataaatctttaaaaaaaatgatcaagt
catcttgttatgttaccctttctagtaacttaggggcaatgttttagctt
gctgagactgcctggaaagttctttgtgcacacgtatagggccttgtgtc
agagaaatgtttcagaagatctgcaaatagatcaagaacatagggaaggc
aaacagaaggaagttagtcatctttgttgcttcagaactgagcaaacgtt
ttgggagagcgaagtttcttgctggacatcactgaataagaatgagttga
tgtcacagttgccagaagcaacttttttttccctttttttctttttttgg
tctacaaagagttcagcagaatggggagggagagagtgaagacaggggac
aaagaattgttggggga
gaattccatgagaggaagtgctaataatctgtggtgtcagatggctgcag
tggtcatctttagtgcctacacttaccaactcctgacactgggaatcttg
actgttcatcattctatttgtcacttatgcctcagtgaagttggagatgg
ggtagacagcacaccaggaaagctgtgaccactgaatgacgtggcccttt
cccatgtctttgagacagagtcctgatatgtactcaggctggcctcagcc
tcatttcaagccacttgcctcagcctactaagggctgagtgtatgggtaa
agtccaccagaccaggtaaaaaagagtcttattttcttcttcttcttttt
ttttttttttggttttctgagatagggtttctctgtatagccctggctgt
cctggaactcactctgtagaccaggctggcctcgaactcagaaatccgtc
tgcctctgcctcccaagtgctgggattaaaggcgtgctccaccacgcccg
gcttactttcttctttacaatgcgtacaacttaactttctgtactacata
tgtatagttttataattaaaaattatatataattttatgataaaaatata
attcctgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacgagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcatccaaacgctgacaccattgctactctagcagattttattgaaagga
cgcagatgtagctgtctcttgtgagactatgctggggtccagcaaacaca
taagttgatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134620110_134621225
seq2: B6Ng01-017J23.b_46_1162

seq1  GAATTCATTCCTACAACATGCCCCTGAGAGCCCCAGAAGGAAATGTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTACAACATGCCCCTGAGAGCCCCAGAAGGAAATGTTAGT  50

seq1  GCCGTGCCCTGTCACAGTTCCATGGTTGGGTTCCTTGTGCGCATCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCCCTGTCACAGTTCCATGGTTGGGTTCCTTGTGCGCATCCCAGA  100

seq1  ATACGACAGTGTCAGGCAAAGCGTAGATGATGCTTAGACTGTGAATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGACAGTGTCAGGCAAAGCGTAGATGATGCTTAGACTGTGAATGGTG  150

seq1  CCTTCCCAGCCCTGCGGTCAAGTCAGGGCGTGGGGCCTCGGAGACCTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCAGCCCTGCGGTCAAGTCAGGGCGTGGGGCCTCGGAGACCTAGC  200

seq1  AAAGGAGGAGCTGAGCCTGACACAGTCTGCTGCTCCCATCACGGCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGAGCTGAGCCTGACACAGTCTGCTGCTCCCATCACGGCTGGCC  250

seq1  ACTTAGACACCAGAACCACAGTCCCTAGTCAGCTCTTTAAACTTTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACACCAGAACCACAGTCCCTAGTCAGCTCTTTAAACTTTATATT  300

seq1  ACTTAATGTGTAGAGTAAAATGTTGGCCTTCAAAAGCATTTAAACGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTGTAGAGTAAAATGTTGGCCTTCAAAAGCATTTAAACGGTGC  350

seq1  CTTGCTGAAGTATATAGCAGAAAGTAGTTATAATACATGGTTGCTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAAGTATATAGCAGAAAGTAGTTATAATACATGGTTGCTATTCT  400

seq1  TACCTTTTCTTTTTTCCCTCCCATAAGTAACAAATGATCTAGAATAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTCTTTTTTCCCTCCCATAAGTAACAAATGATCTAGAATAGTCT  450

seq1  GGGGCTTACTTTTTTATTTTTCTTTTATCTTTTTGGATCATCTATTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTACTTTTTTATTTTTCTTTTATCTTTTTGGATCATCTATTAGCT  500

seq1  CTTTCTTACAATGATGAAACAGAAATATCTTTTGTGGGGTGTAAACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACAATGATGAAACAGAAATATCTTTTGTGGGGTGTAAACATGA  550

seq1  TCAAGTCGGGCTGGCGAGGTGGCTCAGTGATTAAGAGCACTGACTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCGGGCTGGCGAGGTGGCTCAGTGATTAAGAGCACTGACTGCTAT  600

seq1  TCCCGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACC  650

seq1  ATCTGTAATGAGATCTGACGCCCTCTTCCGGTGTGTCTGAAGACAACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAATGAGATCTGACGCCCTCTTCCGGTGTGTCTGAAGACAACTAC  700

seq1  AGTGTAATTACATATAATAAAAAATAAATCTTTAAAAAAAATGATCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATTACATATAATAAAAAATAAATCTTTAAAAAAAATGATCAAGT  750

seq1  CATCTTGTTATGTTACCCTTTCTAGTAACTTAGGGGCAATGTTTTAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTTATGTTACCCTTTCTAGTAACTTAGGGGCAATGTTTTAGCTT  800

seq1  GCTGAGACTGCCTGGAAAGTTCTTTGTGCACACGTATAGGGCCTTGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTGCCTGGAAAGTTCTTTGTGCACACGTATAGGGCCTTGTGTC  850

seq1  AGAGAAATGTTTCAGAAGATCTGCAAATAGATCAAGAACATAGGGAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGTTTCAGAAGATCTGCAAATAGATCAAGAACATAGGGAAGGC  900

seq1  AAACAGAAGGAAGTTAGTCATCTTTGTTGCTTCAGAACTGAGCAAACGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGGAAGTTAGTCATCTTTGTTGCTTCAGAACTGAGCAAACGTT  950

seq1  TTGGGAGAGCGAAG-TTCCTGCTGGACATCACTGAATAAGAATGAGTTGA  999
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TTGGGAGAGCGAAGTTTCTTGCTGGACATCACTGAATAAGAATGAGTTGA  1000

seq1  TGTCACAGTTGGCCAGAAGCAACTTTTTTTTTTCCTTTTTTTCTTTTTT-  1048
      |||||||||| |||||||||||| |||||||| |||||||||||||||| 
seq2  TGTCACAGTT-GCCAGAAGCAAC-TTTTTTTTCCCTTTTTTTCTTTTTTT  1048

seq1  -GTCATACAAAGAGTACAGCAGGATGGGGA-GGAGAGAGTGAAGACAAGG  1096
       ||| |||||||||| |||||| ||||||| |||||||||||||||| ||
seq2  GGTC-TACAAAGAGTTCAGCAGAATGGGGAGGGAGAGAGTGAAGACAGGG  1097

seq1  GGAAAAGAATTGTAGGGGAA  1116
      |  |||||||||| |||| |
seq2  GACAAAGAATTGTTGGGGGA  1117

seq1: chr11_93922337_93922577
seq2: B6Ng01-017J23.g_692_929 (reverse)

seq1  AGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACA  50
      |||||| |||| |||||||||| | |||| ||||||||||||||||||||
seq2  AGCATCAACTTATGTGTTTGCTGGACCCCAGCATAGTCTCACAAGAGACA  50

seq1  GCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTATATGCAATGGTGT  100
      |||||||||| |||||||| |||||||| ||||||  || ||||||||||
seq2  GCTACATCTGCGTCCTTTCAATAAAATC-TGCTAGAGTA-GCAATGGTGT  98

seq1  CAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCT  148

seq1  ACATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTTTGTAACTCCT  200
      |||||||||||||||||||||||||||||||| | |||| ||||||||||
seq2  ACATGGTCCATCCTTTCATCTCAGCTCCAAAC-TCGTCTCTGTAACTCCT  197

seq1  TCCATGGGTGTTTTGTTCCCAATTCTAAGGAGGGGCATAGT  241
      |||||||||||||||||||||| ||||||||||||||||||
seq2  TCCATGGGTGTTTTGTTCCCAAATCTAAGGAGGGGCATAGT  238