BAC Information

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BAC

Clone NameB6Ng01-017P12
Chromosome6 (Build37)
Map Location 72,681,244 - 72,799,185
singlet/doubletdoublet
Overlap geneTcf3, Kcmf1
Upstream geneReep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890
Downstream geneTmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P12.bB6Ng01-017P12.g
ACCDH851499DH851500
length1,034980
definitionDH851499|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P12, 5' end.DH851500|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,798,150 - 72,799,185)(72,681,244 - 72,682,218)
sequence
gaattccatgattccactttaagaacttaggaactcattaagttctcctt
gggaggaaagtaggaatgtgtcctgctcatcacgatttgagcacactgat
tattgaacatactgaaggaggatgttacaataccttcaacaacttcacta
aaacaagagtctgggctttactaggccagagtcaagcactacaggtgtga
aggacttgccttgccaagcactgccaagtactttgaaacagcagtgagag
gaggcagaagccagaatacaagagccatatttataatgctccagactctg
gtttttcaccctgctaactcctctgatgaaatgagcagaaattaatgaat
gctgatgccacggtgccaggccctgatccaagaactgggagtaaagaata
agcttgacaatgctttcatggtgcttccattagcaagtcttcattatgac
tggacctgctcttgagtctaaataatttttaaagccatctttaagttctg
cctaaagcaggcttaattttatgtcagttcacataggtatcggggtcctt
ggctgagcttggtaatgttgcgtgaacttccattgttccataacgcttga
ttttctccactgacagaatgatggtgtggcaccaggttttcctgtcaagt
tgattgatctgatcgtatgcattttcattggcagagctgttatctcagtt
atcaggagtgagacgttctgcagggggacagcttaactcttcaggccctt
ccgcttctcagttgcaacaactgcagatgcagctgcagcttgagcgacag
catgcacaggcagcccggcaacaactggagactgctcgcaacgcaagtcg
gcgcactaacacaagcagcgtcaccactacgatcacacaggccacggcca
cagccaacacagccacacagagaacagccccgcaggccctcaacaactcc
cagttctgttaacaaggaatttgtttactaaggtgtttcgggtaaagtaa
atgttgggggtttgtgtttaaaggtataaatcat
gaattcttttcaccgctccgggggaaggacagactccactctgagaagca
gagaagtctattcaggccaatattgaaagttcacagtcaggtgactcctt
gggaacggatggctctagccccagagagcagacagctttagaaacagcct
ccccaaaggtaattaaaaatagtgcctccttataatgcaatactataatg
agcaattaagatgaaattagtgtgtcacaataaaaaagatgcatggcatt
cttagcctctgcaacccagcatcggggactcattggggggaggctgatgt
ctgggagtggacaagcagcggtttcatcaaggaaagattaagtgttcaga
tcaattttgtgaacactctaagataatgtgaaaatacctgaacgccattg
ttgcttttgtttgtattcagtttattttcaaaataaaagaatgatccaaa
cagatttatgagggcagagaaatatttatagcaaggcactgataaatcga
atcatcaaaattcaccagtgctaatatttagatgtatctgcttcaagtcc
agggtggtttctgttcgtaaaaaatagaattgttatggcatcaggtgaag
ccacctcccatccttctgcacaaaacagacacacagccgtgtttttatag
gttcggcactgttatcagacagtgtaatgctgtttttgtgttttgtcttt
tgtaatttgaaagtgatttcatagacataggaaatgtaaaagaaacacat
aaagtcccaggcgtcctttacccagcttgcccaagttgcataaccaactt
catcacatgcacacaccagaatactgcgggagagatagctcagtggtaaa
gtgcttgctgtaccacacgaggacccgggttcaagccctagaaccctcct
ggaaaatgccaggtgtggggctggagaagatcctgagtcagttccctaca
gccaatatgtgtggttcacatcaacctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72798150_72799185
seq2: B6Ng01-017P12.b_43_1076 (reverse)

seq1  ATGATTTATACCTTGTAAACACAAA-CACCAACATTTACTTTACCCGAAA  49
      |||||||||||||| |||||||||| | ||||||||||||||||||||||
seq2  ATGATTTATACCTT-TAAACACAAACCCCCAACATTTACTTTACCCGAAA  49

seq1  CACACTAGTAAACAAAATACCTTGTTAACAGGAACTGGGAGTTGTGGAGG  99
      |||  |||||||| |||| ||||||||||| |||||||||||||| ||||
seq2  CACCTTAGTAAAC-AAATTCCTTGTTAACA-GAACTGGGAGTTGTTGAGG  97

seq1  GCCTGC-GGGCTGTTCTCTGTGTTGGCTGTGTTGGCTGTGGCCGTGGCCT  148
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTGCGGGGCTGTTCTCTGTG-TGGCTGTGTTGGCTGTGGCCGTGGCCT  146

seq1  GTGTGATCGTAGTGGTGACGCTGCTTGTGTTAGTGCGCCGACTTGCGTTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCGTAGTGGTGACGCTGCTTGTGTTAGTGCGCCGACTTGCGTTG  196

seq1  CGAGCAGTCTCCAGTTGTTGCCGGGCTGCCTGTGCATGCTGTCGCTCAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAGTCTCCAGTTGTTGCCGGGCTGCCTGTGCATGCTGTCGCTCAAG  246

seq1  CTGCAGCTGCATCTGCAGTTGTTGCAACTGAGAAGCGGAAGGGCCTGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGCATCTGCAGTTGTTGCAACTGAGAAGCGGAAGGGCCTGAAG  296

seq1  AGTTAAGCTGTCCCCCTGCAGAACGTCTCACTCCTGATAACTGAGATAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGCTGTCCCCCTGCAGAACGTCTCACTCCTGATAACTGAGATAAC  346

seq1  AGCTCTGCCAATGAAAATGCATACGATCAGATCAATCAACTTGACAGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCAATGAAAATGCATACGATCAGATCAATCAACTTGACAGGAA  396

seq1  AACCTGGTGCCACACCATCATTCTGTCAGTGGAGAAAATCAAGCGTTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGCCACACCATCATTCTGTCAGTGGAGAAAATCAAGCGTTATG  446

seq1  GAACAATGGAAGTTCACGCAACATTACCAAGCTCAGCCAAGGACCCCGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGAAGTTCACGCAACATTACCAAGCTCAGCCAAGGACCCCGAT  496

seq1  ACCTATGTGAACTGACATAAAATTAAGCCTGCTTTAGGCAGAACTTAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTGAACTGACATAAAATTAAGCCTGCTTTAGGCAGAACTTAAAG  546

seq1  ATGGCTTTAAAAATTATTTAGACTCAAGAGCAGGTCCAGTCATAATGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTAAAAATTATTTAGACTCAAGAGCAGGTCCAGTCATAATGAAG  596

seq1  ACTTGCTAATGGAAGCACCATGAAAGCATTGTCAAGCTTATTCTTTACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAATGGAAGCACCATGAAAGCATTGTCAAGCTTATTCTTTACTC  646

seq1  CCAGTTCTTGGATCAGGGCCTGGCACCGTGGCATCAGCATTCATTAATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTGGATCAGGGCCTGGCACCGTGGCATCAGCATTCATTAATTT  696

seq1  CTGCTCATTTCATCAGAGGAGTTAGCAGGGTGAAAAACCAGAGTCTGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATTTCATCAGAGGAGTTAGCAGGGTGAAAAACCAGAGTCTGGAG  746

seq1  CATTATAAATATGGCTCTTGTATTCTGGCTTCTGCCTCCTCTCACTGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAATATGGCTCTTGTATTCTGGCTTCTGCCTCCTCTCACTGCTG  796

seq1  TTTCAAAGTACTTGGCAGTGCTTGGCAAGGCAAGTCCTTCACACCTGTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTACTTGGCAGTGCTTGGCAAGGCAAGTCCTTCACACCTGTAG  846

seq1  TGCTTGACTCTGGCCTAGTAAAGCCCAGACTCTTGTTTTAGTGAAGTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACTCTGGCCTAGTAAAGCCCAGACTCTTGTTTTAGTGAAGTTGT  896

seq1  TGAAGGTATTGTAACATCCTCCTTCAGTATGTTCAATAATCAGTGTGCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTATTGTAACATCCTCCTTCAGTATGTTCAATAATCAGTGTGCTC  946

seq1  AAATCGTGATGAGCAGGACACATTCCTACTTTCCTCCCAAGGAGAACTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTGATGAGCAGGACACATTCCTACTTTCCTCCCAAGGAGAACTTA  996

seq1  ATGAGTTCCTAAGTTCTTAAAGTGGAATCATGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCCTAAGTTCTTAAAGTGGAATCATGGAATTC  1034

seq1: chr6_72681244_72682218
seq2: B6Ng01-017P12.g_69_1047

seq1  GAATTCTTTTCACCGCTCCGGGGGAAGGACAGACTCCACTCTGAGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCACCGCTCCGGGGGAAGGACAGACTCCACTCTGAGAAGCA  50

seq1  GAGAAGTCTATTCAGGCCAATATTGAAAGTTCACAGTCAGGTGACTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCTATTCAGGCCAATATTGAAAGTTCACAGTCAGGTGACTCCTT  100

seq1  GGGAACGGATGGCTCTAGCCCCAGAGAGCAGACAGCTTTAGAAACAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGGATGGCTCTAGCCCCAGAGAGCAGACAGCTTTAGAAACAGCCT  150

seq1  CCCCAAAGGTAATTAAAAATAGTGCCTCCTTATAATGCAATACTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGTAATTAAAAATAGTGCCTCCTTATAATGCAATACTATAATG  200

seq1  AGCAATTAAGATGAAATTAGTGTGTCACAATAAAAAAGATGCATGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTAAGATGAAATTAGTGTGTCACAATAAAAAAGATGCATGGCATT  250

seq1  CTTAGCCTCTGCAACCCAGCATCGGGGACTCATTGGGGGGAGGCTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTCTGCAACCCAGCATCGGGGACTCATTGGGGGGAGGCTGATGT  300

seq1  CTGGGAGTGGACAAGCAGCGGTTTCATCAAGGAAAGATTAAGTGTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTGGACAAGCAGCGGTTTCATCAAGGAAAGATTAAGTGTTCAGA  350

seq1  TCAATTTTGTGAACACTCTAAGATAATGTGAAAATACCTGAACGCCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTGTGAACACTCTAAGATAATGTGAAAATACCTGAACGCCATTG  400

seq1  TTGCTTTTGTTTGTATTCAGTTTATTTTCAAAATAAAAGAATGATCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGTTTGTATTCAGTTTATTTTCAAAATAAAAGAATGATCCAAA  450

seq1  CAGATTTATGAGGGCAGAGAAATATTTATAGCAAGGCACTGATAAATCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATGAGGGCAGAGAAATATTTATAGCAAGGCACTGATAAATCGA  500

seq1  ATCATCAAAATTCACCAGTGCTAATATTTAGATGTATCTGCTTCAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAAAATTCACCAGTGCTAATATTTAGATGTATCTGCTTCAAGTCC  550

seq1  AGGGTGGTTTCTGTTCGTAAAAAATAGAATTGTTATGGCATCAGGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGTTTCTGTTCGTAAAAAATAGAATTGTTATGGCATCAGGTGAAG  600

seq1  CCACCTCCCATCCTTCTGCACAAAACAGACACACAGCCGTGTTTTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCCATCCTTCTGCACAAAACAGACACACAGCCGTGTTTTTATAG  650

seq1  GTTCGGCACTGTTATCAGACAGTGTAATGCTG-TTTTGTGTTTTGTC-TT  698
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  GTTCGGCACTGTTATCAGACAGTGTAATGCTGTTTTTGTGTTTTGTCTTT  700

seq1  TGTAATTTG-AAGTGATTGCATAGACATAGGAAATGTAAAAGAAACACAT  747
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  TGTAATTTGAAAGTGATTTCATAGACATAGGAAATGTAAAAGAAACACAT  750

seq1  AAAGTCCCAGGCGTCCTTTACCCAGCTTGCCCAAGTTGCATAACCAACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCAGGCGTCCTTTACCCAGCTTGCCCAAGTTGCATAACCAACTT  800

seq1  CATCACATGCACACACCAGAATACTGCGGGAGAGATAGCTCAGTTGGTAA  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATCACATGCACACACCAGAATACTGCGGGAGAGATAGCTCAG-TGGTAA  849

seq1  AGTGCTTGCTGTACCAACACGAGGACCCGGGTTCAAGCCCTAGAACCCT-  896
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  AGTGCTTGCTGTACC-ACACGAGGACCCGGGTTCAAGCCCTAGAACCCTC  898

seq1  CTTGAAAATGCCAGGTGTGGGGCTGGAG-AGATCCTGAGTTCAAGTCCCA  945
      || ||||||||||||||||||||||||| |||||||||| |||  |||| 
seq2  CTGGAAAATGCCAGGTGTGGGGCTGGAGAAGATCCTGAG-TCAGTTCCCT  947

seq1  ACAGCCAA-ATG-GTGGTTCACAACCACCTGT  975
      |||||||| ||| |||||||||| | ||||||
seq2  ACAGCCAATATGTGTGGTTCACATCAACCTGT  979