BAC Information

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BAC

Clone NameB6Ng01-018D18
Chromosome6 (Build37)
Map Location 41,681,869 - 41,682,941
singlet/doubletsinglet
Overlap genenone
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel
Downstream geneOlfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018D18.bB6Ng01-018D18.g
ACCDH851695DH851696
length1,068146
definitionDH851695|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D18, 5' end.DH851696|Mus musculus domesticus DNA, BAC clone: B6Ng01-018D18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcttgcacttgcgcataaggcttactagttaggcgaagtgga
agccagcgccatcttataatggcgattgctcgcggcacagctctccacag
tagattgtaaatctcactcactaatatgatattgaaattcacttcaaagt
caatggtataggaaggctaaaatgaaaagctggggaaagatataatataa
atattaataaacagaaaattgacagttatgttaacaacatatagaattca
gatcaaagcaacttataaaggacaaaagctgcacagagagatcctgtctc
aaaaaatacaaaaatgaaagtaagagttttcttcaaatgtgatccctgat
aggttgtccatgcacagtagataaatctccacgcatttttccaaaggtat
gccgttacctgttaggggaataaaactgaaagccccagggaagcttaatg
tggcatgacatgtctgtaactccagcacttgtgtggctgaagaggaagta
tctagtgttcaagatgttctctgggctacacacaaagtccctgtctcaat
ttttacaaaaagccaacaactaagtacaatgagatatcactacatactta
ccaaaatgtcttaaaatgatgagaaagataagctcgaaagaatgaaaaaa
aaatcaatcattcatcattattacaaggaatcaaatgatatagtttatag
aaatatcaaatttgaattcatgtaaactctccacataaatgtttgtgtta
gctttattcaaagacacaatcaggaaacagctcatatttcttcagtgagt
aacacttaaagacattatgaggatccataccatggtgtattattaaacaa
caggaaacaggtaactcaatgcataaagattgggttcatgtccaggggat
cacctaagtgagacaaaaagccagtctcaaaagtggtgtgctataccatg
caatttacataatatgcttcatgtgtacaattataaagttggatagcaaa
ttaatgcactggaaaatgaggagatgtttcagtagtaaacagtagttatt
tacacggaaagttgggaa
acagaccatatgaaaaccaagaaggaagaccactctaaagtgtggatgct
acagttctactcagaagggggaaaaataatctcaggaagtagaaggagag
agagatttgggagggaaaggggagtgcaagggaaatagtggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41681869_41682941
seq2: B6Ng01-018D18.b_43_1110

seq1  GAATTCACTCTTGCACTTGCGCATAAGGCTTACTAGTTAGGCGAAGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGCACTTGCGCATAAGGCTTACTAGTTAGGCGAAGTGGA  50

seq1  AGCCAGCGCCATCTTATAATGGCGATTGCTCGCGGCACAGCTCTCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCGCCATCTTATAATGGCGATTGCTCGCGGCACAGCTCTCCACAG  100

seq1  TAGATTGTAAATCTCACTCACTAATATGATATTGAAATTCACTTCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTAAATCTCACTCACTAATATGATATTGAAATTCACTTCAAAGT  150

seq1  CAATGGTATAGGAAGGCTAAAATGAAAAGCTGGGGAAAGATATAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTATAGGAAGGCTAAAATGAAAAGCTGGGGAAAGATATAATATAA  200

seq1  ATATTAATAAACAGAAAATTGACAGTTATGTTAACAACATATAGAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAAACAGAAAATTGACAGTTATGTTAACAACATATAGAATTCA  250

seq1  GATCAAAGCAACTTATAAAGGACAAAAGCTGCACAGAGAGATCCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGCAACTTATAAAGGACAAAAGCTGCACAGAGAGATCCTGTCTC  300

seq1  AAAAAATACAAAAATGAAAGTAAGAGTTTTCTTCAAATGTGATCCCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACAAAAATGAAAGTAAGAGTTTTCTTCAAATGTGATCCCTGAT  350

seq1  AGGTTGTCCATGCACAGTAGATAAATCTCCACGCATTTTTCCAAAGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCCATGCACAGTAGATAAATCTCCACGCATTTTTCCAAAGGTAT  400

seq1  GCCGTTACCTGTTAGGGGAATAAAACTGAAAGCCCCAGGGAAGCTTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTACCTGTTAGGGGAATAAAACTGAAAGCCCCAGGGAAGCTTAATG  450

seq1  TGGCATGACATGTCTGTAACTCCAGCACTTGTGTGGCTGAAGAGGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGACATGTCTGTAACTCCAGCACTTGTGTGGCTGAAGAGGAAGTA  500

seq1  TCTAGTGTTCAAGATGTTCTCTGGGCTACACACAAAGTCCCTGTCTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTTCAAGATGTTCTCTGGGCTACACACAAAGTCCCTGTCTCAAT  550

seq1  TTTTACAAAAAGCCAACAACTAAGTACAATGAGATATCACTACATACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAAAGCCAACAACTAAGTACAATGAGATATCACTACATACTTA  600

seq1  CCAAAATGTCTTAAAATGATGAGAAAGATAAGCTCGAAAGAATGAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTCTTAAAATGATGAGAAAGATAAGCTCGAAAGAATGAAAAAA  650

seq1  AAATCAATCATTCATCATTATTACAAGGAATCAAATGATATAGTTTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATCATTCATCATTATTACAAGGAATCAAATGATATAGTTTATAG  700

seq1  AAATATCAAATTTGAATTCATGTAAACTCTCCACATAAATGTTTGTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAATTTGAATTCATGTAAACTCTCCACATAAATGTTTGTGTTA  750

seq1  GCTTTATTCAAAGACACAATCAGGAAACAGCTCATATTTCTTCAGTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTCAAAGACACAATCAGGAAACAGCTCATATTTCTTCAGTGAGT  800

seq1  AACACTTAAAGACATTATGAGGATCCATACCATGGTGTATTATTAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTAAAGACATTATGAGGATCCATACCATGGTGTATTATTAAACAA  850

seq1  CAGGAAACAGGTAACTCAATGCATAAAGATTGGGTTCATGTCCAGGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAGGTAACTCAATGCATAAAGATTGGGTTCATGTCCAGGGGAT  900

seq1  CACCTAAGTGAGAC-AAAAGCCAGTCTCAAAAGTGGTGTGCTATACCATG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACCTAAGTGAGACAAAAAGCCAGTCTCAAAAGTGGTGTGCTATACCATG  950

seq1  CAATTTACATAATATGCTTCATGTGTACAATTATAAAGTTGGATAGCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACATAATATGCTTCATGTGTACAATTATAAAGTTGGATAGCAAA  1000

seq1  TTAATGGCACTGGAAAATGAGGAGATGTTTCAGGTAGTACACAAGTAAGT  1049
      ||||| |||||||||||||||||||||||||| |||||| || ||||  |
seq2  TTAAT-GCACTGGAAAATGAGGAGATGTTTCA-GTAGTAAAC-AGTAGTT  1047

seq1  ATATACAACGGGAAAAGTTGGGAA  1073
      || ||| ||||  |||||||||||
seq2  ATTTAC-ACGG--AAAGTTGGGAA  1068