BAC Information

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BAC

Clone NameB6Ng01-018L09
Chromosome6 (Build37)
Map Location 78,425,587 - 78,548,318
singlet/doubletdoublet
Overlap geneLOC621716, Ppia-ps6_789.1
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g
Downstream geneLOC384440, LOC621815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018L09.bB6Ng01-018L09.g
ACCDH852035DH852036
length1,133782
definitionDH852035|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L09, 5' end.DH852036|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,547,175 - 78,548,318)(78,425,587 - 78,426,364)
sequence
gaattccttgtgtaccaaaaatgagaaggggaggctctactaacaaaggc
atctcaaacatcagtgggttagagggctgttcagggtctttttcttcatc
cttccacacagccagctacttcagctacctgttggagcctgcctgtagct
tagtatatccatgttgtaaactagaacaacaagccctattaatctcttat
atcattactgccgtactatttcattagtttaattcctgttacaaatctct
caatcaattctccccacagtggatttgaatcataaactgacatttgatat
tgagacaatagcctgaccatcctccccaggttattggatcagaagatagt
ctagactcaacaacttcaaagcccttccatctaaaggcttcccatcctta
agttaagaaatgtctttcaacctagtttctgagagatttgtgttcacagt
tttatcttttccagtaaaaataaccatggagtaagcaggtccaatcagga
tatatgaatagaaaaagaagggagtggatcttagaagcaggaagcaatac
tttctgagaaaaacctaacacccatttcctacaaaagagataaaaacagt
tttgtggtgagtctcacacacacaaaaaaaatcttaaaaaagtgaaaaaa
tagccttcagcggtgtgtgacttctccagccacctgtgacttcaagggca
atgaaacattcttcacagtggccctagatgcttagtcaagtaaatattaa
ttttgtttagttttaaaatgaaaacctatcaggaatttgaaatttttatt
caatgtaacgacacacatgattgaaacttacacaacacagttgtgttgta
gaacactgttctatagattatttagccaattttagtaaagttcccaaata
tttattacttaaagttggatatctaagcattacgcactagagccctctca
taaaaataaagcagagtccacgtgagcatcaggaagtcttttatcgttct
ttgaaatcataacagctagagaatgcctgcattgagcagttagtaaaact
tctgctcagctttcatacttgaaacacatttaaaagaagccttactgcat
gcttggaagaagacatggatgtaatgggtggtg
gaattcactattagaaatagcagtctaaaatgaaaacacattctctggcc
tttctttgtagcatttgtaaacaaaatatgttttagaaagccatctcatg
gcaatttagattaaataacgttattcaaagggtgattattttctacgcca
ttgagcttattccctaagtggctttacaagaaagcatactttgcatacag
aatttaggatgaaaacttctgcagaaatatttgaactatattagaggtcc
aaatacagattttgccctcatggtcaactttttgattgaagcttactaaa
agggagaaagaaagaaatgaaagaggaaaaaagggagggagatgggagag
agggacagaggcagggaatggagaaaagaaaataggaaggaagaaaggtg
ttcagataaaagctcaggtatgaaactttcttcaacatattggatcttgt
ggcttaactagaactcaaaatagaggagactttgctccatggagttcaca
attcattgcttaaagtaggaactgcaggtaactagtgactttcatagata
agacttccccgaaatttctgggatgttttaggatatgaatcccatgtctc
ccagtgtcttctcttcatgttcatatattttcttagggaagaattcagat
aacaacatgaaccccattgtaactgcaggaaagaccaagagttagcacag
aagctaattgcaaacccaaccttgaggtttatataagggtgatagaagaa
gcatgctttcacattaaagaataaatagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78547175_78548318
seq2: B6Ng01-018L09.b_44_1176 (reverse)

seq1  CACCAC---TTACATCCAATGCTTCCTTCCAAAGCCATGCAGTGAAGCCT  47
      ||||||   |||||||| |||  | |||||||   |||||||| | || |
seq2  CACCACCCATTACATCC-ATGTCTTCTTCCAA--GCATGCAGTAAGGCTT  47

seq1  CTTTTGGATGTGTTTTCAAGTTATGAAAGCTGAGCAG-AGTTTTACTAAC  96
      |||||  ||||| ||||||| |||||||||||||||| ||||||||||||
seq2  CTTTTAAATGTG-TTTCAAG-TATGAAAGCTGAGCAGAAGTTTTACTAAC  95

seq1  TGCTCAATGCAGGCATTCTTCTAGCTGTTAATGGATTTCAAAGAACGATA  146
      |||||||||||||||||| |||||||||||   |||||||||||||||||
seq2  TGCTCAATGCAGGCATTC-TCTAGCTGTTA--TGATTTCAAAGAACGATA  142

seq1  AAAGACTTCACTGATGCTCACGTGGACTCTGCTTTAATTTTTAATGAGAG  196
      ||||||||| ||||||||||||||||||||||||||  |||| |||||||
seq2  AAAGACTTC-CTGATGCTCACGTGGACTCTGCTTTA--TTTTTATGAGAG  189

seq1  GGCTCTAGTGCGTAATTGCTTAGAATATCCACCTTTAAGTAATAAATATT  246
      ||||||||||||||| ||||||| ||||||| ||||||||||||||||||
seq2  GGCTCTAGTGCGTAA-TGCTTAG-ATATCCAACTTTAAGTAATAAATATT  237

seq1  TGGGAACTTTACTAAAAATTGGCTAAATAATCTATTAGAACAGTGTTCTA  296
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TGGGAACTTTACT-AAAATTGGCTAAATAATCTA-TAGAACAGTGTTCTA  285

seq1  CAACACAACTGTGTTGTGTAAGTTTCAATCCTGTGTGTCGTTACATTGAA  346
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAACACAACTGTGTTGTGTAAGTTTCAATCATGTGTGTCGTTACATTGAA  335

seq1  TAAAAATTTCAAATTCCTGATAGGTTTTCATTTTAAAACTAAACAAAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTCAAATTCCTGATAGGTTTTCATTTTAAAACTAAACAAAATT  385

seq1  AATATTTACTTGACTAAGCATCTAGGGCCACTGTGAAGAATGTTTCATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACTTGACTAAGCATCTAGGGCCACTGTGAAGAATGTTTCATTG  435

seq1  CCCTTGAAGTCACAGGTGGCTGGAGAAGTCACACACCGCTGAAGGCTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAAGTCACAGGTGGCTGGAGAAGTCACACACCGCTGAAGGCTATT  485

seq1  TTTTCACTTTTTTAAGATTTTTTTTGTGTGTGTGAGACTCACCACAAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTTTTAAGATTTTTTTTGTGTGTGTGAGACTCACCACAAAAC  535

seq1  TGTTTTTATCTCTTTTGTAGGAAATGGGTGTTAGGTTTTTCTCAGAAAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATCTCTTTTGTAGGAAATGGGTGTTAGGTTTTTCTCAGAAAGT  585

seq1  ATTGCTTCCTGCTTCTAAGATCCACTCCCTTCTTTTTCTATTCATATATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCCTGCTTCTAAGATCCACTCCCTTCTTTTTCTATTCATATATC  635

seq1  CTGATTGGACCTGCTTACTCCATGGTTATTTTTACTGGAAAAGATAAAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGACCTGCTTACTCCATGGTTATTTTTACTGGAAAAGATAAAAC  685

seq1  TGTGAACACAAATCTCTCAGAAACTAGGTTGAAAGACATTTCTTAACTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACACAAATCTCTCAGAAACTAGGTTGAAAGACATTTCTTAACTTA  735

seq1  AGGATGGGAAGCCTTTAGATGGAAGGGCTTTGAAGTTGTTGAGTCTAGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGAAGCCTTTAGATGGAAGGGCTTTGAAGTTGTTGAGTCTAGAC  785

seq1  TATCTTCTGATCCAATAACCTGGGGAGGATGGTCAGGCTATTGTCTCAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTGATCCAATAACCTGGGGAGGATGGTCAGGCTATTGTCTCAAT  835

seq1  ATCAAATGTCAGTTTATGATTCAAATCCACTGTGGGGAGAATTGATTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTCAGTTTATGATTCAAATCCACTGTGGGGAGAATTGATTGAG  885

seq1  AGATTTGTAACAGGAATTAAACTAATGAAATAGTACGGCAGTAATGATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTAACAGGAATTAAACTAATGAAATAGTACGGCAGTAATGATAT  935

seq1  AAGAGATTAATAGGGCTTGTTGTTCTAGTTTACAACATGGATATACTAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTAATAGGGCTTGTTGTTCTAGTTTACAACATGGATATACTAAG  985

seq1  CTACAGGCAGGCTCCAACAGGTAGCTGAAGTAGCTGGCTGTGTGGAAGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCAGGCTCCAACAGGTAGCTGAAGTAGCTGGCTGTGTGGAAGGA  1035

seq1  TGAAGAAAAAGACCCTGAACAGCCCTCTAACCCACTGATGTTTGAGATGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAAGACCCTGAACAGCCCTCTAACCCACTGATGTTTGAGATGC  1085

seq1  CTTTGTTAGTAGAGCCTCCCCTTCTCATTTTTGGTACACAAGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGTAGAGCCTCCCCTTCTCATTTTTGGTACACAAGGAATTC  1133

seq1: chr6_78425587_78426364
seq2: B6Ng01-018L09.g_68_848

seq1  GAATTCACTATTAGAAATAGCAGTCTAAAATGAAAACACATTCTCTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTAGAAATAGCAGTCTAAAATGAAAACACATTCTCTGGCC  50

seq1  TTTCTTTGTAGCATTTGTAAACAAAATATGTTTTAGAAAGCCATCTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTAGCATTTGTAAACAAAATATGTTTTAGAAAGCCATCTCATG  100

seq1  GCAATTTAGATTAAATAACGTTATTCAAAGGGTGATTATTTTCTACGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTAGATTAAATAACGTTATTCAAAGGGTGATTATTTTCTACGCCA  150

seq1  TTGAGCTTATTCCCTAAGTGGCTTTACAAGAAAGCATACTTTGCATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTATTCCCTAAGTGGCTTTACAAGAAAGCATACTTTGCATACAG  200

seq1  AATTTAGGATGAAAACTTCTGCAGAAATATTTGAACTATATTAGAGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGATGAAAACTTCTGCAGAAATATTTGAACTATATTAGAGGTCC  250

seq1  AAATACAGATTTTGCCCTCATGGTCAACTTTTTGATTGAAGCTTACTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGATTTTGCCCTCATGGTCAACTTTTTGATTGAAGCTTACTAAA  300

seq1  AGGGAGAAAGAAAGAAATGAAAGAGGAAAAAAGGGAGGGAGATGGGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAAGAAAGAAATGAAAGAGGAAAAAAGGGAGGGAGATGGGAGAG  350

seq1  AGGGACAGAGGCAGGGAATGGAGAAAAGAAAATAGGAAGGAAGAAAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGAGGCAGGGAATGGAGAAAAGAAAATAGGAAGGAAGAAAGGTG  400

seq1  TTCAGATAAAAGCTCAGGTATGAAACTTTCTTCAACATATTGGATCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAAAAGCTCAGGTATGAAACTTTCTTCAACATATTGGATCTTGT  450

seq1  GGCTTAACTAGAACTCAAAATAGAGGAGACTTTGCTCCATGGAGTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACTAGAACTCAAAATAGAGGAGACTTTGCTCCATGGAGTTCACA  500

seq1  ATTCATTGCTTAAAGTAGGAACTGCAGGTAACTAGTGACTTTCATAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGCTTAAAGTAGGAACTGCAGGTAACTAGTGACTTTCATAGATA  550

seq1  AGACTTCCCCGAAATTTCTGGGATG-TTTAGGATATGAATCCCATGTCTC  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGACTTCCCCGAAATTTCTGGGATGTTTTAGGATATGAATCCCATGTCTC  600

seq1  CCAGTGTCTTCTCTTCATGTTCATATA-TTTCTTAGGGAAGAATTCAGAT  648
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAGTGTCTTCTCTTCATGTTCATATATTTTCTTAGGGAAGAATTCAGAT  650

seq1  AACAACATGAA-CCCATTGTAACTGCAGGAAAGACCAAGAGTTAGCACAG  697
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAACATGAACCCCATTGTAACTGCAGGAAAGACCAAGAGTTAGCACAG  700

seq1  AAGCAAAATGCAAACCCAACCTTGAGGTTTATATAAGGGTGATAGAAGAA  747
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATTGCAAACCCAACCTTGAGGTTTATATAAGGGTGATAGAAGAA  750

seq1  GCATGCTTACACATTAAAGAATAAATAGAAA  778
      |||||||| ||||||||||||||||||||||
seq2  GCATGCTTTCACATTAAAGAATAAATAGAAA  781