BAC Information

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BAC

Clone NameB6Ng01-018N22
Chromosome6 (Build37)
Map Location 37,860,781 - 38,011,724
singlet/doubletdoublet
Overlap geneTrim24, Svopl, Atp6v0a4
Upstream geneDgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102
Downstream geneLOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N22.bB6Ng01-018N22.g
ACCDH852140DH852141
length1,061638
definitionDH852140|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N22, 5' end.DH852141|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,010,664 - 38,011,724)(37,860,781 - 37,861,418)
sequence
gaattcaggttgtgtttttgtttacttcttgttgctttgataaacaccat
gactacaaacaacttggagaggaaatggtttatttagcctcacaggtcac
tgtctgttattgagaggaagttaaagcaggaactgaagcaaaggctatgg
aggggagctgcttactggcttgctcctcatagcttgcttggttgctccaa
tatacaactcaggacaagctgcttaggaatagagccacccaaagtggact
aggccttccccttcaatcactattgaagaaaatgtcccacaggccaatct
ctcgaggcaacaggtgactctagtttgtcaagttgacagaaactaaccaa
cccaggaagccaagcttggcaacaagtgtcctcactcactgagctatctc
agaagtcctcatctctggatttcttccagcatctagctatctgatcaatg
gcaccaatgcttctaacgctgtcaccacagctgcagtgacaacaggctcg
tcctttcccttctctgagcccgatgtcatgttgcccccagaggagctctc
tgtagctgctttctgtgctgtatccccagctcctccaggcctcctcagtt
ctgcctcatgtctttcttgtcacatttcttacccagatttggaacctggc
ttcaaacaagcttacatttttaaactcctataagatgaagatgtcagtca
tcctgggaatcgctcatatgatttttggtgttattctcagcctcttcaat
cacatgtgagtttcttctttaaaaaatattttaaattatgtgtatgtatg
tatgtgcatttgggtgtgggtatggacacgtgaatgcaggcacatggacc
ccagaagctggagtcactggtaattgtgaactgcttagcacagttctagg
aaccaaacttgggaacaaacttgggtcctttacagaacacgaggactgat
gagccatcttctacctattgtgtgacttccttattccccctcctgcttgc
tcacctgatggcatgatgaaggaagagagacagaactacccttgaacttt
gtggtgtcagg
gaattcacgagtcgattacagtgaagaatcgtctcaagcttctgacctgc
tcaggtagcatgtggctgtggcctgtgctagcatgtcctacttatgagga
ttggacccagggctcatgactgcaaggcagacagacagacagacagacac
tctatcaacaaggctgtcccccagcacctgcaagaattctttaaaggaaa
tttttcccagttctttgcttttactactttttattgtcaactttttacta
ggtaaaataagtctattattaactcagttttcctttctggttacttctaa
ggtttttctaaaacttcaaaatcatataaatattttagttgtctctaaat
ttaaatgtaataaagtttacctattatggggggaaaaaacttaaaaaaaa
aaatagaagccataaactctacatttagagctgaaagggtttgtagcccc
ataggaagaacaacagtatcaaccaaccagagctcccagggtctaaaccg
ccaaccaaggagtacacagagagggatccatggctccagccgtagatgta
gaagaggatggccttgttgagcatcagtgggaggagaagcccttggtcct
gtgagggcagggaggcaggaatgggtgggtgtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_38010664_38011724
seq2: B6Ng01-018N22.b_46_1106 (reverse)

seq1  CCTGACA-CACAAAGGCTCAAGGGTAGCTCTGTCTCTCTTCC-TCATCAG  48
      ||||||| |||||| | |||||||||| |||||||||||||| |||||| 
seq2  CCTGACACCACAAA-GTTCAAGGGTAGTTCTGTCTCTCTTCCTTCATCA-  48

seq1  TGCCATCAGGTGAGCAAGCA-GAGGGTGAATAAGGAAGTTCACAC-ATAG  96
      |||||||||||||||||||| ||||| ||||||||||| |||||| ||||
seq2  TGCCATCAGGTGAGCAAGCAGGAGGGGGAATAAGGAAG-TCACACAATAG  97

seq1  GTAGAAGATGGCTCATCAGTCCTCGTGTTCTTGTAAAGGACCCAAGTTTG  146
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGAAGATGGCTCATCAGTCCTCGTGTTC-TGTAAAGGACCCAAGTTTG  146

seq1  GTTCCAAGTTTGGTTCCTAGAACTGTGCTAAGCAGTTCACAATTACCAGT  196
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTTTGGTTCCTAGAACTGTGCTAAGCAGTTCACAATTACCAGT  196

seq1  GACTCCAGCTTCTGGGGTCCATGTGCCTGCATTCACGTGTCCATACCCAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGCTTCTGGGGTCCATGTGCCTGCATTCACGTGTCCATACCCAC  246

seq1  ACCCAAATGCACATACATACATACACATAATTTAAAATATTTTTTAAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATGCACATACATACATACACATAATTTAAAATATTTTTTAAAGA  296

seq1  AGAAACTCACATGTGATTGAAGAGGCTGAGAATAACACCAAAAATCATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCACATGTGATTGAAGAGGCTGAGAATAACACCAAAAATCATAT  346

seq1  GAGCGATTCCCAGGATGACTGACATCTTCATCTTATAGGAGTTTAAAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTCCCAGGATGACTGACATCTTCATCTTATAGGAGTTTAAAAAT  396

seq1  GTAAGCTTGTTTGAAGCCAGGTTCCAAATCTGGGTAAGAAATGTGACAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTGTTTGAAGCCAGGTTCCAAATCTGGGTAAGAAATGTGACAAG  446

seq1  AAAGACATGAGGCAGAACTGAGGAGGCCTGGAGGAGCTGGGGATACAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGAGGCAGAACTGAGGAGGCCTGGAGGAGCTGGGGATACAGCA  496

seq1  CAGAAAGCAGCTACAGAGAGCTCCTCTGGGGGCAACATGACATCGGGCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCAGCTACAGAGAGCTCCTCTGGGGGCAACATGACATCGGGCTC  546

seq1  AGAGAAGGGAAAGGACGAGCCTGTTGTCACTGCAGCTGTGGTGACAGCGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGAAAGGACGAGCCTGTTGTCACTGCAGCTGTGGTGACAGCGT  596

seq1  TAGAAGCATTGGTGCCATTGATCAGATAGCTAGATGCTGGAAGAAATCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCATTGGTGCCATTGATCAGATAGCTAGATGCTGGAAGAAATCCA  646

seq1  GAGATGAGGACTTCTGAGATAGCTCAGTGAGTGAGGACACTTGTTGCCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGACTTCTGAGATAGCTCAGTGAGTGAGGACACTTGTTGCCAA  696

seq1  GCTTGGCTTCCTGGGTTGGTTAGTTTCTGTCAACTTGACAAACTAGAGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTTCCTGGGTTGGTTAGTTTCTGTCAACTTGACAAACTAGAGTC  746

seq1  ACCTGTTGCCTCGAGAGATTGGCCTGTGGGACATTTTCTTCAATAGTGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGCCTCGAGAGATTGGCCTGTGGGACATTTTCTTCAATAGTGAT  796

seq1  TGAAGGGGAAGGCCTAGTCCACTTTGGGTGGCTCTATTCCTAAGCAGCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGAAGGCCTAGTCCACTTTGGGTGGCTCTATTCCTAAGCAGCTT  846

seq1  GTCCTGAGTTGTATATTGGAGCAACCAAGCAAGCTATGAGGAGCAAGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTTGTATATTGGAGCAACCAAGCAAGCTATGAGGAGCAAGCCA  896

seq1  GTAAGCAGCTCCCCTCCATAGCCTTTGCTTCAGTTCCTGCTTTAACTTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGCTCCCCTCCATAGCCTTTGCTTCAGTTCCTGCTTTAACTTCC  946

seq1  TCTCAATAACAGACAGTGACCTGTGAGGCTAAATAAACCATTTCCTCTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAACAGACAGTGACCTGTGAGGCTAAATAAACCATTTCCTCTCC  996

seq1  AAGTTGTTTGTAGTCATGGTGTTTATCAAAGCAACAAGAAGTAAACAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTTGTAGTCATGGTGTTTATCAAAGCAACAAGAAGTAAACAAAA  1046

seq1  ACACAACCTGAATTC  1061
      |||||||||||||||
seq2  ACACAACCTGAATTC  1061

seq1: chr6_37860781_37861418
seq2: B6Ng01-018N22.g_68_705

seq1  GAATTCACGAGTCGATTACAGTGAAGAATCGTCTCAAGCTTCTGACCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGAGTCGATTACAGTGAAGAATCGTCTCAAGCTTCTGACCTGC  50

seq1  TCAGGTAGCATGTGGCTGTGGCCTGTGCTAGCATGTCCTACTTATGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGCATGTGGCTGTGGCCTGTGCTAGCATGTCCTACTTATGAGGA  100

seq1  TTGGACCCAGGGCTCATGACTGCAAGGCAGACAGACAGACAGACAGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCCAGGGCTCATGACTGCAAGGCAGACAGACAGACAGACAGACAC  150

seq1  TCTATCAACAAGGCTGTCCCCCAGCACCTGCAAGAATTCTTTAAAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAACAAGGCTGTCCCCCAGCACCTGCAAGAATTCTTTAAAGGAAA  200

seq1  TTTTTCCCAGTTCTTTGCTTTTACTACTTTTTATTGTCAACTTTTTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAGTTCTTTGCTTTTACTACTTTTTATTGTCAACTTTTTACTA  250

seq1  GGTAAAATAAGTCTATTATTAACTCAGTTTTCCTTTCTGGTTACTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATAAGTCTATTATTAACTCAGTTTTCCTTTCTGGTTACTTCTAA  300

seq1  GGTTTTTCTAAAACTTCAAAATCATATAAATATTTTAGTTGTCTCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTAAAACTTCAAAATCATATAAATATTTTAGTTGTCTCTAAAT  350

seq1  TTAAATGTAATAAAGTTTACCTATTATGGGGGGAAAAAACTTAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTAATAAAGTTTACCTATTATGGGGGGAAAAAACTTAAAAAAAA  400

seq1  AAATAGAAGCCATAAACTCTACATTTAGAGCTGAAAGGGTTTGTAGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGCCATAAACTCTACATTTAGAGCTGAAAGGGTTTGTAGCCCC  450

seq1  ATAGGAAGAACAACAGTATCAACCAACCAGAGCTCCCAGGGTCTAAACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGAACAACAGTATCAACCAACCAGAGCTCCCAGGGTCTAAACCG  500

seq1  CCAACCAAGGAGTACACAGAGAGGGATCCATGGCTCCAGCCGTAGATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAGGAGTACACAGAGAGGGATCCATGGCTCCAGCCGTAGATGTA  550

seq1  GAAGAGGATGGCCTTGTTGAGCATCAGTGGGAGGAGAAGCCCTTGGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATGGCCTTGTTGAGCATCAGTGGGAGGAGAAGCCCTTGGTCCT  600

seq1  GTGAGGGCAGGGAGGCAGGAATGGGTGGGTGTGTGGGG  638
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCAGGGAGGCAGGAATGGGTGGGTGTGTGGGG  638