BAC Information

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BAC

Clone NameB6Ng01-019E05
Chromosome6 (Build37)
Map Location 29,410,241 - 29,512,613
singlet/doubletdoublet
Overlap geneFlnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3
Upstream geneLOC100041350, Snd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik
Downstream geneTspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019E05.bB6Ng01-019E05.g
ACCDH852408DH852409
length1,014714
definitionDH852408|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E05, 5' end.DH852409|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,511,593 - 29,512,613)(29,410,241 - 29,410,954)
sequence
gaattcaagaggagccatgattaaaaagacatttgagtaatggtaaccaa
aactttgctgaattggctagtttataaattggtgagactcttaggtaatt
ggaatatccaagtcatggctacatagaagccagtgttgggcgggcattgt
tatgcttactagctgttaccatcaagtctctctgggacttgatgcaacgc
tttccttccttccatagctaggagcctcttgtgagccagggtctgctaac
actggccgtggttgtttgttgtttgcttttgtgttttttaagacagggtt
tctctgtgtagccctaactgtcctggaacaagctctgtagaccaggctgg
cctcaaattcacagagatccacttgtctttgccttctgagtgcctggcat
aacaatagcttttatttttgtgataaataaaagatcatctacagtgatat
aaacaaagaaaattatgatgttactattaaacttcttaaaatttcttaaa
agagtagcatggagttgattgttaatcatgccgtttcccttggcttttcc
tcaaattagtgggctgcacaactagacagagaagttggaattttttctgt
ggatcataatttgtatcataggttcagtctagaacaatggcaatggcaaa
cctcttggtaagctatagttcttagagccttttagcttttccttttttga
gagagtgtcttacaatgtagctttgactggtttggaactcattatgtaga
ccaagctgacctcaaacttatagaaatctgcctatgtctacctcccaggt
gctgggattaaaggtgtgcaccaccacacctggctcagctttttttaatg
ctcaggggcggttcagacagtttctatatatcgttactaatttggaaaac
atgcagttaggtttaaaagaaaatatagaaaagtagtagtttctgtcctg
ctgcccacaaaccgagttgcatggagtttgtttgttctagtggaagtgac
aagcggtagtttaa
gaattccaggacagcctggactatgcagagaaaccctgtcttgaaaacca
aaaaaagaaaaacaaatccttttttttttttttcagtgctggggtttgaa
cccagtgcctcattcatgccagggaagtgctctaccactgagctatattc
ccattttgttccagtttaaagtcatactttcgccctttcagttcacttga
ctcctcagaggaagcctagaagggtgaggggcagggtcagaagtggctgt
gacccaggggtaagcagggattggagctggtcagatgctgcctctgtgga
acaggtcgtattcttcaaaagctgttgctgaggacaggcaggagcctaac
gcacacaacgctatccaatgcccatctcagagagccgtcagtgtcctaga
aaagggtagggagtccttttgactagtcccgtgactgcctactctgccct
tcaggtccccggttgtctggaggccacagccttcacgaaacatccacagt
tctggtggagacggtgaccaagtcctcctcgagccgcggtgccagttaca
gttccatccccaagttctcctcggatgccagcaaggtggtaacaaggggc
cctggtctgtcccaggcctttgtgggtcagaagaactcattcaccgtgga
ctgcagcaaagcaggcatgttccatccgagaggcttgtcttggggaggag
ggggacgggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29511593_29512613
seq2: B6Ng01-019E05.b_44_1057 (reverse)

seq1  TTAAACTACCGCTTGTTCACTTCCACTAGAACAAGCAAACTCCATGCAAC  50
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TTAAACTACCGCTTG-TCACTTCCACTAGAACAAACAAACTCCATGCAAC  49

seq1  TCTGGCTATGTGGGCAGCAGGACAGATACTACTACTTTTCTATTATTTTT  100
      ||  | | |||||||||||||||||| ||||||||||||||||   ||||
seq2  TC--GGTTTGTGGGCAGCAGGACAGAAACTACTACTTTTCTAT--ATTTT  95

seq1  CTTTTAAACCTAACTGCATTGTTTTTCCAAATTAGTAACGATATATAGAA  150
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  CTTTTAAACCTAACTGCAT--GTTTTCCAAATTAGTAACGATATATAGAA  143

seq1  ACTGTCTGAACCGCCCCTGAGCATTAAAAAAAGCTGAGCCAGGTGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGAACCGCCCCTGAGCATTAAAAAAAGCTGAGCCAGGTGTGGTG  193

seq1  GTGCACACCTTTAATCCCAGCACCTGGGAGGTAGACATAGGCAGATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACCTTTAATCCCAGCACCTGGGAGGTAGACATAGGCAGATTTCT  243

seq1  ATAAGTTTGAGGTCAGCTTGGTCTACATAATGAGTTCCAAACCAGTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGAGGTCAGCTTGGTCTACATAATGAGTTCCAAACCAGTCAAA  293

seq1  GCTACATTGTAAGACACTCTCTCAAAAAAGGAAAAGCTAAAAGGCTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTGTAAGACACTCTCTCAAAAAAGGAAAAGCTAAAAGGCTCTAA  343

seq1  GAACTATAGCTTACCAAGAGGTTTGCCATTGCCATTGTTCTAGACTGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATAGCTTACCAAGAGGTTTGCCATTGCCATTGTTCTAGACTGAAC  393

seq1  CTATGATACAAATTATGATCCACAGAAAAAATTCCAACTTCTCTGTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATACAAATTATGATCCACAGAAAAAATTCCAACTTCTCTGTCTAG  443

seq1  TTGTGCAGCCCACTAATTTGAGGAAAAGCCAAGGGAAACGGCATGATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGCCCACTAATTTGAGGAAAAGCCAAGGGAAACGGCATGATTAA  493

seq1  CAATCAACTCCATGCTACTCTTTTAAGAAATTTTAAGAAGTTTAATAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACTCCATGCTACTCTTTTAAGAAATTTTAAGAAGTTTAATAGTA  543

seq1  ACATCATAATTTTCTTTGTTTATATCACTGTAGATGATCTTTTATTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAATTTTCTTTGTTTATATCACTGTAGATGATCTTTTATTTATC  593

seq1  ACAAAAATAAAAGCTATTGTTATGCCAGGCACTCAGAAGGCAAAGACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAAAAGCTATTGTTATGCCAGGCACTCAGAAGGCAAAGACAAG  643

seq1  TGGATCTCTGTGAATTTGAGGCCAGCCTGGTCTACAGAGCTTGTTCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCTGTGAATTTGAGGCCAGCCTGGTCTACAGAGCTTGTTCCAGG  693

seq1  ACAGTTAGGGCTACACAGAGAAACCCTGTCTTAAAAAACACAAAAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGGGCTACACAGAGAAACCCTGTCTTAAAAAACACAAAAGCAAA  743

seq1  CAACAAACAACCACGGCCAGTGTTAGCAGACCCTGGCTCACAAGAGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAACCACGGCCAGTGTTAGCAGACCCTGGCTCACAAGAGGCTC  793

seq1  CTAGCTATGGAAGGAAGGAAAGCGTTGCATCAAGTCCCAGAGAGACTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATGGAAGGAAGGAAAGCGTTGCATCAAGTCCCAGAGAGACTTGA  843

seq1  TGGTAACAGCTAGTAAGCATAACAATGCCCGCCCAACACTGGCTTCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACAGCTAGTAAGCATAACAATGCCCGCCCAACACTGGCTTCTATG  893

seq1  TAGCCATGACTTGGATATTCCAATTACCTAAGAGTCTCACCAATTTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGACTTGGATATTCCAATTACCTAAGAGTCTCACCAATTTATAA  943

seq1  ACTAGCCAATTCAGCAAAGTTTTGGTTACCATTACTCAAATGTCTTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCAATTCAGCAAAGTTTTGGTTACCATTACTCAAATGTCTTTTTA  993

seq1  ATCATGGCTCCTCTTGAATTC  1021
      |||||||||||||||||||||
seq2  ATCATGGCTCCTCTTGAATTC  1014

seq1: chr6_29410241_29410954
seq2: B6Ng01-019E05.g_68_781

seq1  GAATTCCAGGACAGCCTGGACTATGCAGAGAAACCCTGTCTTGAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCTGGACTATGCAGAGAAACCCTGTCTTGAAAACCA  50

seq1  AAAAAAGAAAAACAAATCCTTTTTTTTTTTTTTCAGTGCTGGGGTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAACAAATCCTTTTTTTTTTTTTTCAGTGCTGGGGTTTGAA  100

seq1  CCCAGTGCCTCATTCATGCCAGGGAAGTGCTCTACCACTGAGCTATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCCTCATTCATGCCAGGGAAGTGCTCTACCACTGAGCTATATTC  150

seq1  CCATTTTGTTCCAGTTTAAAGTCATACTTTCGCCCTTTCAGTTCACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTTCCAGTTTAAAGTCATACTTTCGCCCTTTCAGTTCACTTGA  200

seq1  CTCCTCAGAGGAAGCCTAGAAGGGTGAGGGGCAGGGTCAGAAGTGGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGGAAGCCTAGAAGGGTGAGGGGCAGGGTCAGAAGTGGCTGT  250

seq1  GACCCAGGGGTAAGCAGGGATTGGAGCTGGTCAGATGCTGCCTCTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGGGTAAGCAGGGATTGGAGCTGGTCAGATGCTGCCTCTGTGGA  300

seq1  ACAGGTCGTATTCTTCAAAAGCTGTTGCTGAGGACAGGCAGGAGCCTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCGTATTCTTCAAAAGCTGTTGCTGAGGACAGGCAGGAGCCTAAC  350

seq1  GCACACAACGCTATCCAATGCCCATCTCAGAGAGCCGTCAGTGTCCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAACGCTATCCAATGCCCATCTCAGAGAGCCGTCAGTGTCCTAGA  400

seq1  AAAGGGTAGGGAGTCCTTTTGACTAGTCCCGTGACTGCCTACTCTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAGGGAGTCCTTTTGACTAGTCCCGTGACTGCCTACTCTGCCCT  450

seq1  TCAGGTCCCCGGTTGTCTGGAGGCCACAGCCTTCACGAAACATCCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCCCGGTTGTCTGGAGGCCACAGCCTTCACGAAACATCCACAGT  500

seq1  TCTGGTGGAGACGGTGACCAAGTCCTCCTCGAGCCGCGGTGCCAGTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAGACGGTGACCAAGTCCTCCTCGAGCCGCGGTGCCAGTTACA  550

seq1  GTTCCATCCCCAAGTTCTCCTCGGATGCCAGCAAGGTGGTAACAAGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCCCCAAGTTCTCCTCGGATGCCAGCAAGGTGGTAACAAGGGGC  600

seq1  CCTGGTCTGTCCCAGGCCTTTGTGGGTCAGAAGAACTCATTCACCGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTGTCCCAGGCCTTTGTGGGTCAGAAGAACTCATTCACCGTGGA  650

seq1  CTGCAGCAAAGCAGGCATGTTCCATCCGAGAGGCTTGTCTTGGGGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCAAAGCAGGCATGTTCCATCCGAGAGGCTTGTCTTGGGGAGGAG  700

seq1  GGGGACGGGAAGGA  714
      ||||||||||||||
seq2  GGGGACGGGAAGGA  714