BAC Information

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BAC

Clone NameB6Ng01-019M19
Chromosome6 (Build37)
Map Location 66,365,010 - 66,366,070
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M19.bB6Ng01-019M19.g
ACCDH852784DH852785
length1,1931,051
definitionDH852784|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M19, 5' end.DH852785|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatagaatatatatcaattttatatatagcatcactacaagata
gcacatctttgtagattggcagaaatctgctcaaaagagcagataaatac
ctaatgattgttatatatttaataataacaggaaaagaattttaatagca
ggaatctttcctgaaatgtaattttctcagccttacccaaagaagcaaat
ccatcattgctttacagtccatggcggaactagctcaggaagatcgcctg
ctggtttttagcttctcctagatggctcctgggattggcttgtgtttttc
atacattattcaccttgtgttttgagactgtctcacactataatctggga
cttgcaaatagactaagataatattcttttttctttgctattcgaactct
ggaatgaaaagtgttcaccatcatgcaccatctctttaaaagtttttatc
tcttttagtgaaagtaaatattttcatacaatatattctggttagggatt
cctctctccctgctccttacctttcttccccatgtctcctccagcaatca
acaacacgatgaaacaaaaacaaataaaccagaatagggcaaaacagaag
aaaaagaaccagataaagcccaagaaatacaaagacatagaaacacatac
atttgcactcacaagaatctcataaaagcaaatacagaagccatagcata
tgcacaaaagacttataaagattcaattgagattgtttcgagttagccat
cttctgtgaggcaaggatgggacacacctgttaccctagtgagatcccct
tggagaaaactaatttttcattagcaagtgactatcaaatggagatagtt
tctggattattagtgggatgggggcttgtgtccacgtctccgttcagctc
aaggatcccatctgttagacctgtgtaggccttgtgcatgctaccacaat
cctctgagtttaaatatgtgtccatgtgctatgtttaaggacttgttttc
ttgttttcctcaatccccttgtctctcatacctctattgccctcccgaag
gggttgtatttgtcaatgcctttcacatccaatggaagggccagtgtttc
cctctgaggtgatataatgggataatcctgaagaatctggtatttgaaac
cttctgcctctgagtagacccaacttctagatgggaggatcgc
gaattcaaagaacagatcaaagaagtcttgcaggccacggggaagccagc
tccacaggaagtggtctggagatcacttgtaaaacagtgagcagacttga
tgaattaaatgccagccttgaaaagggcagaagtgtgtctagttcccagg
tttcccctcgtccgtggactacactgggatgattttaacaaccagttttc
catttgtgcgcagtgacttagcacatcatttttttctgatacaagcttaa
tggctggattatgtgagaaataaaaattccagcttgcatcaagatgcaca
tacttgtgtttcatatttctctcttctttccctactttatatgtattaat
taaaaatgagatggatattatctataaatctactggtgaagaaggaaaaa
tctggagacttaataatagtgaaaatgaggtaaccatgccacacttgtgc
taataaacttaagaaacagccattctatacacatcaaactcctgtagtct
gccaaatatcctattgggatgataattaccagaccaagatccttaagtca
gtaaattaaccctttatctatttttcttcagcctgaatttttttttcttt
ctgtttttaagagttcagtttctgggtttcacatttggtttatgagaatt
aaactattatgaggcattttaattgcataggacacaactataattgaaat
ttatccattttttgtttgacattttaattgtctcattagccagaaaacag
actctggacagccaaggtgagccttcattataaatttgaaaaatagaggg
gccccctacctactctatcccaaggttgcttgtttccattctttctgctg
gccctcatggcttcagtcctgttccctccacccccagtacctgatcgtgt
cccctcttctccccttccctttcacccaggtccctcttccctttcaccca
ggtcctctctcccgactccccactcccccttagatggaatgccctacagt
ggagagagggaactagtagagtccaccttctagtaaaaacagggagagtc
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66365010_66366070
seq2: B6Ng01-019M19.g_68_1118

seq1  GAATTCAAAGAACAGATCAAAGAAGTCTTGCAGGCCACGGGGAAGCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACAGATCAAAGAAGTCTTGCAGGCCACGGGGAAGCCAGC  50

seq1  TCCACAGGAAGTGGTCTGGAGATCACTTGTAAAACAGTGAGCAGACTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAAGTGGTCTGGAGATCACTTGTAAAACAGTGAGCAGACTTGA  100

seq1  TGAATTAAATGCCAGCCTTGAAAAGGGCAGAAGTGTGTCTAGTTCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAATGCCAGCCTTGAAAAGGGCAGAAGTGTGTCTAGTTCCCAGG  150

seq1  TTTCCCCTCGTCCGTGGACTACACTGGGATGATTTTAACAACCAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCGTCCGTGGACTACACTGGGATGATTTTAACAACCAGTTTTC  200

seq1  CATTTGTGCGCAGTGACTTAGCACATCATTTTTTTCTGATACAAGCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGCGCAGTGACTTAGCACATCATTTTTTTCTGATACAAGCTTAA  250

seq1  TGGCTGGATTATGTGAGAAATAAAAATTCCAGCTTGCATCAAGATGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGATTATGTGAGAAATAAAAATTCCAGCTTGCATCAAGATGCACA  300

seq1  TACTTGTGTTTCATATTTCTCTCTTCTTTCCCTACTTTATATGTATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGTTTCATATTTCTCTCTTCTTTCCCTACTTTATATGTATTAAT  350

seq1  TAAAAATGAGATGGATATTATCTATAAATCTACTGGTGAAGAAGGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAGATGGATATTATCTATAAATCTACTGGTGAAGAAGGAAAAA  400

seq1  TCTGGAGACTTAATAATAGTGAAAATGAGGTAACCATGCCACACTTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACTTAATAATAGTGAAAATGAGGTAACCATGCCACACTTGTGC  450

seq1  TAATAAACTTAAGAAACAGCCATTCTATACACATCAAACTCCTGTAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACTTAAGAAACAGCCATTCTATACACATCAAACTCCTGTAGTCT  500

seq1  GCCAAATATCCTATTGGGATGATAATTACCAGACCAAGATCCTTAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATCCTATTGGGATGATAATTACCAGACCAAGATCCTTAAGTCA  550

seq1  GTAAATTAACCCTTTATCTATTTTTCTTCAGCCTGAATTTTTTTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAACCCTTTATCTATTTTTCTTCAGCCTGAATTTTTTTTTCTTT  600

seq1  CTGTTTTTAAGAGTTCAGTTTCTGGGTTTCACATTTGGTTTATGAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTAAGAGTTCAGTTTCTGGGTTTCACATTTGGTTTATGAGAATT  650

seq1  AAACTATTATGAGGCATTTTAATTGCATAGGACACAACTATAATTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTATGAGGCATTTTAATTGCATAGGACACAACTATAATTGAAAT  700

seq1  TTATCCATTTTTTGTTTGACATTTTAATTGTCTCATTAGCCAGAAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTTTTTGTTTGACATTTTAATTGTCTCATTAGCCAGAAAACAG  750

seq1  ACTCTGGACAGCCAAGGTGAGCCTTCATTATAAATTTGAAAAATAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACAGCCAAGGTGAGCCTTCATTATAAATTTGAAAAATAGAGGG  800

seq1  GCCCCCTACCTACTCTATCCCAAGGTTGCTTGTTTCCATTCTTTCTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTACCTACTCTATCCCAAGGTTGCTTGTTTCCATTCTTTCTGCTG  850

seq1  GCCCTCATGGCTTCAGTCCTGTTCCCCTCCAACCCCCAGTACCTGATCGT  900
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GCCCTCATGGCTTCAGTCCTGTT-CCCTCC-ACCCCCAGTACCTGATCGT  898

seq1  GTTCCCCTCTTCTCCCCCTTCCCTTTCCACCCAGGTCCCTCTTCCCTTTC  950
      | ||||||||||| |||||||||||| |||||||||||||||||||||| 
seq2  G-TCCCCTCTTCT-CCCCTTCCCTTT-CACCCAGGTCCCTCTTCCCTTT-  944

seq1  CACCCAGGTCCCTCTCTCCCCGACTCCCCACTCCCCCCCTTAGATGAAAT  1000
      ||||||||| ||||||| ||||||||||||||  |||||||||||| |||
seq2  CACCCAGGT-CCTCTCT-CCCGACTCCCCACT--CCCCCTTAGATGGAAT  990

seq1  GCCCTACAGTGGAGAGAGGGAACTAGTAGAGTCCACCTTCAGTAG-AAAA  1049
      ||||||||||||||||||||||||||||||||||||||||  ||| ||||
seq2  GCCCTACAGTGGAGAGAGGGAACTAGTAGAGTCCACCTTC--TAGTAAAA  1038

seq1  ACAGGGAG-GTCG  1061
      |||||||| ||||
seq2  ACAGGGAGAGTCG  1051