BAC Information

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BAC

Clone NameB6Ng01-020A16
Chromosome6 (Build37)
Map Location 130,529,349 - 130,818,843
singlet/doubletdoublet
Overlap geneLOC667793, EG667798, EG625558, LOC625566, EG636947
Upstream geneKlre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779
Downstream geneLOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020A16.bB6Ng01-020A16.g
ACCDH852951DH852952
length1,010985
definitionDH852951|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A16, 5' end.DH852952|Mus musculus domesticus DNA, BAC clone: B6Ng01-020A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,529,349 - 130,530,364)(130,817,873 - 130,818,843)
sequence
gaattctgtagtgaacttttagcactttgttctgtgcaaaagatttgcca
cattcactgcatttgtaaggcttttcttctgtatggattctgtagtgaac
tttaagctctgagttctgtgtaaaagatttcccacatgcattacatttgt
aaggtttctctcctttgtggattctgtagtgaatttgaagttttgagttc
tttgtaaaagatttgccacattcattacatttgtaaggtttctctcctgt
gtggattctgtagtgaacttgaagttttgaggactgtgaaaatgattttc
cgcagttattagatttatgaagtctttctcctgtacagttttcatggctc
actttgagacttgaggagcaggtaaagaatttttcaaattcattacattt
gtaaggtgtctcttgggtaggagttctataataagcttgaagatttgagg
actctataaatgacttaccatacttattacatttatttactttctgtgct
ttcttgaaatttaacgattcatttgagacatccctgtatgtatcatagag
gtatctcttggactctccattaatccatggtccagtataccagctctgaa
ttgaagattcacttaaaaaggcattcttattttcacttatacaacgtttc
tctttagtatgctgttgtgaagaagattgggagtagtgattagagatagc
catctttctatgcttgctataatgatattctggaataaagctgcttatct
gattttcacttggatgagttttacaaatagaatcttctaataaagcatta
ccttgatataatatctctctttattgattgcttaggtaatacactagtaa
aggattcttaacaaagcctatataaatatcaattatcgtttagagcttta
aaattacctcccacattatatctccatgattcattgcattcacagatctt
tcttatgtgatctacatgtataaattatcactgagtagttttcccctcaa
aatggtatgg
gaattcatacaggagagaaaccttacaaatgtaatgagtgtgagaaatct
tttacaaagtcctacatacttcaagttcactacagaatccatacaggaca
gaagccttacaaatgtaatgaatgtggaaaatcttttacacagaactcgg
agcttaaagttcactacagaatccatacaggagagaaaccttacaaatgt
aatgagtgtggcaaatcttttatccagaactcagaccttaaagatcacca
acgaattcatacaggagagaaaccttacaaatgtaatgagtgtgagaaat
cttttacaaagtcacacaaacttcaagttcactacagaatccatacagga
cagaagccttacaaatgtaatgaatgtgccaagtcttttatacggaacac
agaccttaaagttcactaccgaatccatacaagagtgaaaccctaaatta
ttttttggttgatgcaaatcttttacaaagaactcggagcttaaagttca
ccaaataatctgtacaggggataaaacttataaatataatcaaagtggca
aatcctttacacaacactcagatcatgaagctcaccacagaatccatact
ggagagaaactttacaaataaaatgaaggtggcatatcattcaataaatc
tccaagtctttattttcactacagaatctacaaaagaaataaacctttac
aaatgttgacttgtgacaatcttttaacctggtcctccactttccaaagt
tcatcaaatttcatatactggaaaacaaccttgtaagtgtagtgagtgta
gaaaatatttttttcctatcctcaaatcttcaatatcacctcagaataca
aactagaaactacctttactaatgtaaagaatgtggggatattcttgaca
tggaaacagtgccttcaagatgacccagcatgcatcctggagagaaacat
tgcaatatacaggacatggcaaatatttttagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_130529349_130530364
seq2: B6Ng01-020A16.b_44_1053

seq1  GAATTCTGTAGTGAACTTTTAGCACTTTGTTCTGTGCAAAAGATTTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTGAACTTTTAGCACTTTGTTCTGTGCAAAAGATTTGCCA  50

seq1  CATTCACTGCATTTGTAAGGCTTTTCTTCTGTATGGATTCTGTAGTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTGCATTTGTAAGGCTTTTCTTCTGTATGGATTCTGTAGTGAAC  100

seq1  TTTAAGCTCTGAGTTCTGTGTAAAAGATTTCCCACATGCATTACATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTCTGAGTTCTGTGTAAAAGATTTCCCACATGCATTACATTTGT  150

seq1  AAGGTTTCTCTCCTTTGTGGATTCTGTAGTGAATTTGAAGTTTTGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCTCCTTTGTGGATTCTGTAGTGAATTTGAAGTTTTGAGTTC  200

seq1  TTTGTAAAAGATTTGCCACATTCATTACATTTGTAAGGTTTCTCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAAGATTTGCCACATTCATTACATTTGTAAGGTTTCTCTCCTGT  250

seq1  GTGGATTCTGTAGTGAACTTGAAGTTTTGAGGACTGTGAAAATGATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCTGTAGTGAACTTGAAGTTTTGAGGACTGTGAAAATGATTTTC  300

seq1  CGCAGTTATTAGATTTATGAAGTCTTTCTCCTGTACAGTTTTCATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTATTAGATTTATGAAGTCTTTCTCCTGTACAGTTTTCATGGCTC  350

seq1  ACTTTGAGACTTGAGGAGCAGGTAAAGAATTTTTCAAATTCATTACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGACTTGAGGAGCAGGTAAAGAATTTTTCAAATTCATTACATTT  400

seq1  GTAAGGTGTCTCTTGGGTAGGAGTTCTATAATAAGCTTGAAGATTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTGTCTCTTGGGTAGGAGTTCTATAATAAGCTTGAAGATTTGAGG  450

seq1  ACTCTATAAATGACTTACCATACTTATTACATTTATTTACTTTCTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATAAATGACTTACCATACTTATTACATTTATTTACTTTCTGTGCT  500

seq1  TTCTTGAAATTTAACGATTCATTTGAGACATCCCTGTATGTATCATAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAATTTAACGATTCATTTGAGACATCCCTGTATGTATCATAGAG  550

seq1  GTATCTCTTGGACTCTCCATTAATCCATGGTCCAGTATACCAGCTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTTGGACTCTCCATTAATCCATGGTCCAGTATACCAGCTCTGAA  600

seq1  TTGAAGATTCACTTAAAAAGGCATTCTTATTTTCACTTATACAACGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATTCACTTAAAAAGGCATTCTTATTTTCACTTATACAACGTTTC  650

seq1  TCTTTAGTATGCTGTTGTGAAGAAGATTGGGAGTAGTGATTAGAGATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTATGCTGTTGTGAAGAAGATTGGGAGTAGTGATTAGAGATAGC  700

seq1  CATCTTTCTATGCTTGCTATAATGATATTCTGGAATAAAGCTGCTTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTATGCTTGCTATAATGATATTCTGGAATAAAGCTGCTTATCT  750

seq1  GATTTTCACTTGGATGAGTTTTACAAATAGAATCTTCTAATAAAGCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCACTTGGATGAGTTTTACAAATAGAATCTTCTAATAAAGCATTA  800

seq1  CCTTGATATAATATCTCTCTATATTGATTGCTTAGGTAATACACTAGTAA  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTTGATATAATATCTCTCTTTATTGATTGCTTAGGTAATACACTAGTAA  850

seq1  AGGATTCTTAACAAAGCCTATATAAATATCAATTATCGTTTAAGAGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  AGGATTCTTAACAAAGCCTATATAAATATCAATTATCGTTT-AGAGC-TT  898

seq1  TAAAATTACCTCCCACATTATATCTTCCATGATTCATTGCATTCACAGAT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TAAAATTACCTCCCACATTATATC-TCCATGATTCATTGCATTCACAGA-  946

seq1  TCTTTCTTATGTTGATCTACATTGTATAAATTATCACTGAGTAGGTTTTT  1000
      ||||||||||| ||||||||| ||||||||||||||||||||| ||||| 
seq2  TCTTTCTTATG-TGATCTACA-TGTATAAATTATCACTGAGTA-GTTTTC  993

seq1  CTCTCAAAAT-GTATGG  1016
      | |||||||| ||||||
seq2  CCCTCAAAATGGTATGG  1010

seq1: chr6_130817873_130818843
seq2: B6Ng01-020A16.g_70_1044 (reverse)

seq1  AAAATATTTGCCATGTCCTGTATATTTGTAATGTTTCTCTCCAGGATGCA  50
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  AAAATATTTGCCATGTCCTGTATA-TTGCAATGTTTCTCTCCAGGATGCA  49

seq1  TGCTGGGTCGTCTTTGAAGGCATTATTTCCATGTCAAGAATAT-CCCACA  99
      ||||||||| || ||||||||| | |||||||||||||||||| ||||||
seq2  TGCTGGGTCATC-TTGAAGGCACTGTTTCCATGTCAAGAATATCCCCACA  98

seq1  TTCCTTTCATTAGT-AAGGTAGTTTCTAGTTTGTATTCTGAGGTGATATT  148
      ||| || ||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTTTACATTAGTAAAGGTAGTTTCTAGTTTGTATTCTGAGGTGATATT  148

seq1  GAAGATTTGAGGATAGG--AAAAATATTTTCTACACTCACTACACTTACA  196
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GAAGATTTGAGGATAGGAAAAAAATATTTTCTACACTCACTACACTTACA  198

seq1  AGGTTGTTTTCCAGTATATGAACTTTGATGAACTTTGGAAAGTGGAGGAC  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGTTGTTTTCCAGTATATGAAATTTGATGAACTTTGGAAAGTGGAGGAC  248

seq1  CAGGTT-AAAGATTGTCACAAGTCCACATTTGT-AAGGTTTATCTCTTGT  294
      |||||| ||||||||||||||||| |||||||| ||||||||| |||| |
seq2  CAGGTTAAAAGATTGTCACAAGTCAACATTTGTAAAGGTTTATTTCTTTT  298

seq1  GTAGACTCTGTAGTGAAAATAAAGACTTGGAGATTTATTGAATGATATGC  344
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTCTGTAGTGAAAATAAAGACTTGGAGATTTATTGAATGATATGC  348

seq1  CACCTTCATTTCATTTGTAAAGATTCTCTCCAGTATGGATTCTGTGGTGA  394
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  CACCTTCATTTTATTTGTAAAGTTTCTCTCCAGTATGGATTCTGTGGTGA  398

seq1  GCTTCATGATCTGAGTGTTGTGTAAAGGATTTGCCACTTTGATTATATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGATCTGAGTGTTGTGTAAAGGATTTGCCACTTTGATTATATTT  448

seq1  ATAAGTTTTTTCCCCTGTACAGATTCTTTGGTGAACTTTAAGCTCTGAGT  494
      ||||||||| ||||||||||||||| ||||||||||||||||||| ||||
seq2  ATAAGTTTTATCCCCTGTACAGATTATTTGGTGAACTTTAAGCTCCGAGT  498

seq1  TCTTTGTAAAAGATTTGCATCAACCAAAAAATAATTTAGGGTTTCACTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAAAGATTTGCATCAACCAAAAAATAATTTAGGGTTTCACTCT  548

seq1  TGTATGGATTCGGTAGTGAACTTTAAGGTCTGTGTTCCGTATAAAAGACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATTCGGTAGTGAACTTTAAGGTCTGTGTTCCGTATAAAAGACT  598

seq1  TGCCACATTCATTACATTTGTAAGGCTTCTGTCCTGTATGGATTCTGTAG  644
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATTCATTACATTTGTAAGGCTTCTGTCCTGTATGGATTCTGTAG  648

seq1  TGAACTTGAAGTTTGTAGGACTGTGTAAAAGATTTCTCACACTCATTACA  694
      ||||||||||||||||  |||| |||||||||||||||||||||||||||
seq2  TGAACTTGAAGTTTGTGTGACTTTGTAAAAGATTTCTCACACTCATTACA  698

seq1  TTTGTAAGGTTTCTCTCCTGTATGAATTCGTTGGTGAACTTTAAGGTCTG  744
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTGTAAGGTTTCTCTCCTGTATGAATTCGTTGGTGATCTTTAAGGTCTG  748

seq1  AGTTCTGGATAAAAGATTTGCCACACTCAGTACATTTGTAAGGTTTCTCT  794
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGTTCTGGATAAAAGATTTGCCACACTCATTACATTTGTAAGGTTTCTCT  798

seq1  CCTGTATGGATTCTGTAGTGAACTTTAAGGTCTGTGTTCCGTATAAAAGA  844
      ||||||||||||||||||||||||||||| || | |||| || |||||||
seq2  CCTGTATGGATTCTGTAGTGAACTTTAAGCTCCGAGTTCTGTGTAAAAGA  848

seq1  CTTGCCACATTCATTACATTTGTAAGGCTTCTGTCCTGTATGGATTCTGT  894
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATTCATTACATTTGTAAGGCTTCTGTCCTGTATGGATTCTGT  898

seq1  AGTGAACTTGAAGTTTGTAGGACTGTGTAAAAGATTTCTCACACGCATTA  944
      |||||||||||||| ||||||||| ||||||||||||||||||| |||||
seq2  AGTGAACTTGAAGTATGTAGGACTTTGTAAAAGATTTCTCACACTCATTA  948

seq1  CATTTGTAAGGTTTCTCTCCTGTATGA  971
      |||||||||||||||||||||||||||
seq2  CATTTGTAAGGTTTCTCTCCTGTATGA  975