BAC Information

Click to search

BAC

Clone NameB6Ng01-020B08
Chromosome6 (Build37)
Map Location 134,011,080 - 134,129,209
singlet/doubletdoublet
Overlap geneEtv6
Upstream geneLOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B08.bB6Ng01-020B08.g
ACCDH852983DH852984
length913529
definitionDH852983|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B08, 5' end.DH852984|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,128,295 - 134,129,209)(134,011,080 - 134,011,614)
sequence
gaattcatcaggggaccaagttaattttagctttcttctctttcccaaac
tcctgtaaaataacagaaaagagacttttgaggagacgtaaacccacaaa
gacaaagacaacacaagaaataacaaccaggcctgtggagaagaagaaag
ggaacaaaccagaaacatggaggcagaccagtcaatggaggcagaccagt
cagttagtggtggtctatgcaacagatccaagaaagaggaatgctaactg
tccagtcatgacagcagagaggtaactgcaggttcacatggcaagatctt
aaggggacgggggtttggtggcaccagtcacatctggaacacctggagtc
tgggttccttccctatcatggcagttacagcatgtgctctgatcctagca
gaaccagacggagctgacaggagaatcactgggtggggttcactgggact
ttacagacggagaccaaaagaacacacgtgtgatgacctcctgtctctgt
tttcccgctgctcctcgaggaagtcaacagacgtacacagccacctttgg
ggaatctgcatagtcaagctccaaatctgctggcatttacttaatggtgt
cccaataacatgcacatgtgggtcatcttctccaggggtagcccaaagat
gaccaggattttcaattagggcctgcggctctgttaacttgaaatgggga
tagagggacacagagcaccaggtattgagttaaaacagagtagagagtaa
acaaaagccaaactagaggtgtatgtgtcctgaactccagctcctgggag
ttgaggaaggaggatgcatggtcaaggccagtctgcgctacacggtttaa
cctggtttcaaaataccaacaagagaagagagatttgtgtggggagaggg
gtagaagtgatga
cacaggcgatgggacacagcttataaactgccagaggatgttcagatgga
tgtggggaggaagagggaaagcagagactccgagccagggagcagatggc
cggcctgtgacctacgaggggacgctctacctctgaaagttaaaatgcga
ccgttatttcttttcctgtgaagttttcagtaaggggtgcccagtctcca
aggtggaaaattctagaactgataacttccctcaagggtctaccacccga
agagaacataatgtgtctcttgctctgagtctatgcagaaagaacctgag
aattttctctgctcagccccgcgtgtgacccttcccaactgtgcagtgtg
gtcagagcctaggggattttgtaggtttgtttttggtgttttcccatcgt
tcagtcttgagtttgagagacagctgttttctgatcttcttttcaaggaa
agcttgttctgtggatgggttggaagggacctggaggagtagagatgcct
ggtgcttatgaggcctgtctctgattcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134128295_134129209
seq2: B6Ng01-020B08.b_44_956 (reverse)

seq1  TCATCACCTTCTACCCCTCTCCCCACACAAATCTCTCTTCTCTTGTTGGT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCA-CTTCTACCCCTCTCCCCACACAAATCTCTCTTCTCTTGTTGGT  49

seq1  ATTTTTGAAACCAGGTTAAACCGTGTAGCGCAGACTGGCCTTGACCATGC  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTGAAACCAGGTTAAACCGTGTAGCGCAGACTGGCCTTGACCATGC  98

seq1  ATCCTCCTTCCTCAACTCCCAGGAGCTGGAGTTCAGGACACATACACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTCCTCAACTCCCAGGAGCTGGAGTTCAGGACACATACACCTC  148

seq1  TAGTTTGGCTTTTGTTTACTCTCTACTCTGTTTTAACTCAATACCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGCTTTTGTTTACTCTCTACTCTGTTTTAACTCAATACCTGGTG  198

seq1  CTCTGTGTCCCTCTATCCCCATTTCAAGTTAACAGAGCCGCAGGCCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCCCTCTATCCCCATTTCAAGTTAACAGAGCCGCAGGCCCTAA  248

seq1  TTGAAAATCCTGGTCATCTTTGGGCTACCCCTGGAGAAGATGACCCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCCTGGTCATCTTTGGGCTACCCCTGGAGAAGATGACCCACAT  298

seq1  GTGCATGTTATTGGGACACCATTAAGTAAATGCCAGCAGATTTGGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTTATTGGGACACCATTAAGTAAATGCCAGCAGATTTGGAGCTT  348

seq1  GACTATGCAGATTCCCCAAAGGTGGCTGTGTACGTCTGTTGACTTCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGCAGATTCCCCAAAGGTGGCTGTGTACGTCTGTTGACTTCCTCG  398

seq1  AGGAGCAGCGGGAAAACAGAGACAGGAGGTCATCACACGTGTGTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCGGGAAAACAGAGACAGGAGGTCATCACACGTGTGTTCTTTT  448

seq1  GGTCTCCGTCTGTAAAGTCCCAGTGAACCCCACCCAGTGATTCTCCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCGTCTGTAAAGTCCCAGTGAACCCCACCCAGTGATTCTCCTGTC  498

seq1  AGCTCCGTCTGGTTCTGCTAGGATCAGAGCACATGCTGTAACTGCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGTCTGGTTCTGCTAGGATCAGAGCACATGCTGTAACTGCCATGA  548

seq1  TAGGGAAGGAACCCAGACTCCAGGTGTTCCAGATGTGACTGGTGCCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGGAACCCAGACTCCAGGTGTTCCAGATGTGACTGGTGCCACCA  598

seq1  AACCCCCGTCCCCTTAAGATCTTGCCATGTGAACCTGCAGTTACCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCGTCCCCTTAAGATCTTGCCATGTGAACCTGCAGTTACCTCTCT  648

seq1  GCTGTCATGACTGGACAGTTAGCATTCCTCTTTCTTGGATCTGTTGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATGACTGGACAGTTAGCATTCCTCTTTCTTGGATCTGTTGCATA  698

seq1  GACCACCACTAACTGACTGGTCTGCCTCCATTGACTGGTCTGCCTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCACTAACTGACTGGTCTGCCTCCATTGACTGGTCTGCCTCCATG  748

seq1  TTTCTGGTTTGTTCCCTTTCTTCTTCTCCACAGGCCTGGTTGTTATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTTGTTCCCTTTCTTCTTCTCCACAGGCCTGGTTGTTATTTCT  798

seq1  TGTGTTGTCTTTGTCTTTGTGGGTTTACGTCTCCTCAAAAGTCTCTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGTCTTTGTCTTTGTGGGTTTACGTCTCCTCAAAAGTCTCTTTTC  848

seq1  TGTTATTTTACAGGAGTTTGGGAAAGAGAAGAAAGCTAAAATTAACTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTACAGGAGTTTGGGAAAGAGAAGAAAGCTAAAATTAACTTGG  898

seq1  TCCCCTGATGAATTC  915
      |||||||||||||||
seq2  TCCCCTGATGAATTC  913

seq1: chr6_134011080_134011614
seq2: B6Ng01-020B08.g_65_599

seq1  GAATTCCACAGGCGATGGGACACAGCTTATAAACTGCCAGAGGATGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCGATGGGACACAGCTTATAAACTGCCAGAGGATGTTCA  50

seq1  GATGGATGTGGGGAGGAAGAGGGAAAGCAGAGACTCCGAGCCAGGGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGTGGGGAGGAAGAGGGAAAGCAGAGACTCCGAGCCAGGGAGCA  100

seq1  GATGGCCGGCCTGTGACCTACGAGGGGACGCTCTACCTCTGAAAGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCGGCCTGTGACCTACGAGGGGACGCTCTACCTCTGAAAGTTAAA  150

seq1  ATGCGACCGTTATTTCTTTTCCTGTGAAGTTTTCAGTAAGGGGTGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGACCGTTATTTCTTTTCCTGTGAAGTTTTCAGTAAGGGGTGCCCAG  200

seq1  TCTCCAAGGTGGAAAATTCTAGAACTGATAACTTCCCTCAAGGGTCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGTGGAAAATTCTAGAACTGATAACTTCCCTCAAGGGTCTACC  250

seq1  ACCCGAAGAGAACATAATGTGTCTCTTGCTCTGAGTCTATGCAGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAAGAGAACATAATGTGTCTCTTGCTCTGAGTCTATGCAGAAAGAA  300

seq1  CCTGAGAATTTTCTCTGCTCAGCCCCGCGTGTGACCCTTCCCAACTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAATTTTCTCTGCTCAGCCCCGCGTGTGACCCTTCCCAACTGTGC  350

seq1  AGTGTGGTCAGAGCCTAGGGGATTTTGTAGGTTTGTTTTTGGTGTTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTCAGAGCCTAGGGGATTTTGTAGGTTTGTTTTTGGTGTTTTCC  400

seq1  CATCGTTCAGTCTTGAGTTTGAGAGACAGCTGTTTTCTGATCTTCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTCAGTCTTGAGTTTGAGAGACAGCTGTTTTCTGATCTTCTTTTC  450

seq1  AAGGAAAGCTTGTTCTGTGGATGGGTTGGAAGGGACCTGGAGGAGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCTTGTTCTGTGGATGGGTTGGAAGGGACCTGGAGGAGTAGAG  500

seq1  ATGCCTGGCGCTTATGAGGCCTGTCTCTGAATCAA  535
      |||||||| ||||||||||||||||||||| ||||
seq2  ATGCCTGGTGCTTATGAGGCCTGTCTCTGATTCAA  535