BAC Information

Click to search

BAC

Clone NameB6Ng01-020E18
Chromosome6 (Build37)X (Build37)
Map Location 59,885,178 - 59,886,25536,331,159 - 36,331,690
singlet/doubletsingletsinglet
Overlap geneEG627108
Upstream geneD430015B01Rik, Tigd2, Gprin3, EG634166
Downstream geneEG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726, Snca, ENSMUSG00000064018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E18.bB6Ng01-020E18.g
ACCDH853137DH853138
length1,072870
definitionDH853137|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E18, 5' end.DH853138|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,885,178 - 59,886,255)(36,331,159 - 36,331,690)
sequence
gaattctaattcaatgggtaagaacaaagcagtgttagacacataataat
ctgtcacacagtctgacaaattcttctgaaaaaaaatttttacacatgaa
ttagcagttcattggacattgtacacattgaaaagcattgtgagcctatt
aagttcatcatttcacttgtgctgaacaactctgctcttctgtttccgaa
ggaagaacgtgttctgcaagatgacgtttcttcttctccttcttctagcc
tgtttagtttctgctgctgaggaacccttactggtaaaagcctgggctct
tcgggaattatgcaggaagagaggtggctgtggtgaatttatcactgttt
cacctgacaaacagggtgattctatgactatattggctcctttttgtgtt
ttgtttttgaaatatgttccctgtctttaaacattatttgttttagttaa
ggttataattatttcatttaaacttcttatattgcctaattttattttcc
ctgtgtaaagtgtatgaaaataaaagctcttattaatgccatggcttttt
aaacttttgcataattaacattattttcatagttgaaagtcactatacat
ttgcattaaatgttttgctgttctatactaattcagggatgattcttaat
taacataatagaaacaaaatcaatttgatatctgcagggcaaaaacattg
tatatgatgtattcatagaatagatttctcactttttgagtccttgtact
atggataatatttgtgacaatattgatattaattataatctagtaatatc
tccaaagcaggacttaatttttgaagtttgattttgtatgtttgtgtgtg
taggcagttgtctatgtgggtgtgtacccatgactacaggtttgaatgga
ctgttgcagcaaatatatagaaatcaggacaagtcacacaaagtgtacaa
tttgcatcttttctcaatatgattaaagtgattcttaagaggaaatttat
cttaatgactgcatacaaagtccttgataatcaatatatgatttggttcc
cttttattttccttgaataagt
gaattcctgatctttccaagacttttatcatgaatgagtgttggattttt
tcaattgctttctcagcatctaacgagatgatcatgtggttttgtctttg
agtttgtttatatactggattacattgatggatttccgtatattgaaaca
tccctgcatccctgggatgaaacctacttggtcaggatggatgattgttt
tgatgtgttcttggattcggttagcaaaaactttattgaggatttttgca
tcgatattcataagggaaattggtttgaagttttctatctttgttgggtc
tttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttgg
gtagagtacctttcgtttctattttgtggaatagtttgtgaagagctgga
attaggtcttctttgaaggtctgatagaactctccactaaacctgtctgg
tcctgggctttttatttggctgggacactattaatgactgcttctatttc
tttaggggatataggactgttgagatcattaacctgatcttgatttagct
ttgatacatggtatctgtctagaaacttgtccctttcatccaggtttttc
caatttttgttgagtatagccttttgtagaaggatctgatggtgttatgg
atttcttcaggatcttttgttatgtctccctttttcatttctttttttca
ttattaggatgcttttccctgtgccctctagtgagtctggctaagggttt
atcaatcttgttgattttctcaaagaaccagctccttgattggttgattc
ttttatatagttcttttgcttccactgggttgtttcacccctgagttgat
aatttcctgccttctattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_59885178_59886255
seq2: B6Ng01-020E18.b_43_1114

seq1  GAATTCTAATTCAATGGGTAAGAACAAAGCAGTGTTAGACACATAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTCAATGGGTAAGAACAAAGCAGTGTTAGACACATAATAAT  50

seq1  CTGTCACACAGTCTGACAAATTCTTCTGAAAAAAAATTTTTACACATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACAGTCTGACAAATTCTTCTGAAAAAAAATTTTTACACATGAA  100

seq1  TTAGCAGTTCATTGGACATTGTACACATTGAAAAGCATTGTGAGCCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTTCATTGGACATTGTACACATTGAAAAGCATTGTGAGCCTATT  150

seq1  AAGTTCATCATTTCACTTGTGCTGAACAACTCTGCTCTTCTGTTTCCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATCATTTCACTTGTGCTGAACAACTCTGCTCTTCTGTTTCCGAA  200

seq1  GGAAGAACGTGTTCTGCAAGATGACGTTTCTTCTTCTCCTTCTTCTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACGTGTTCTGCAAGATGACGTTTCTTCTTCTCCTTCTTCTAGCC  250

seq1  TGTTTAGTTTCTGCTGCTGAGGAACCCTTACTGGTAAAAGCCTGGGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTTTCTGCTGCTGAGGAACCCTTACTGGTAAAAGCCTGGGCTCT  300

seq1  TCGGGAATTATGCAGGAAGAGAGGTGGCTGTGGTGAATTTATCACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAATTATGCAGGAAGAGAGGTGGCTGTGGTGAATTTATCACTGTTT  350

seq1  CACCTGACAAACAGGGTGATTCTATGACTATATTGGCTCCTTTTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACAAACAGGGTGATTCTATGACTATATTGGCTCCTTTTTGTGTT  400

seq1  TTGTTTTTGAAATATGTTCCCTGTCTTTAAACATTATTTGTTTTAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGAAATATGTTCCCTGTCTTTAAACATTATTTGTTTTAGTTAA  450

seq1  GGTTATAATTATTTCATTTAAACTTCTTATATTGCCTAATTTTATTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAATTATTTCATTTAAACTTCTTATATTGCCTAATTTTATTTTCC  500

seq1  CTGTGTAAAGTGTATGAAAATAAAAGCTCTTATTAATGCCATGGCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAAGTGTATGAAAATAAAAGCTCTTATTAATGCCATGGCTTTTT  550

seq1  AAACTTTTGCATAATTAACATTATTTTCATAGTTGAAAGTCACTATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTGCATAATTAACATTATTTTCATAGTTGAAAGTCACTATACAT  600

seq1  TTGCATTAAATGTTTTGCTGTTCTATACTAATTCAGGGATGATTCTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAAATGTTTTGCTGTTCTATACTAATTCAGGGATGATTCTTAAT  650

seq1  TAACATAATAGAAACAAAATCAATTTGATATCTGCAGGGCAAAAACATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAATAGAAACAAAATCAATTTGATATCTGCAGGGCAAAAACATTG  700

seq1  TATATGATGTATTCATAGAATAGATTTCTCACTTTTTGAGTCCTTGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATGTATTCATAGAATAGATTTCTCACTTTTTGAGTCCTTGTACT  750

seq1  ATGGATAATATTTGTGACAATATTGATATTAATTATAATCTAGTAATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAATATTTGTGACAATATTGATATTAATTATAATCTAGTAATATC  800

seq1  TCCAAAGCAGGGACTTAATTTTTGAAGTTTGATTTTGTATGTTTGTGTGT  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCA-GGACTTAATTTTTGAAGTTTGATTTTGTATGTTTGTGTGT  849

seq1  GTAGGCAGTTGTCTATGTGGGTGTGTACCCATGACTACAGGTTTTGAATG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTAGGCAGTTGTCTATGTGGGTGTGTACCCATGACTACAGG-TTTGAATG  898

seq1  GACTGTTGCAGCAAATATATAGAAATCAGGGACAAGTCACACAAAGTGTA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACTGTTGCAGCAAATATATAGAAATCA-GGACAAGTCACACAAAGTGTA  947

seq1  CAATTTGCAATCTTTTCTC-ATATGATTAGAGTGATTTCTAAGAGGAAAA  999
      |||||||| |||||||||| ||||||||| |||||||  ||||||| |||
seq2  CAATTTGC-ATCTTTTCTCAATATGATTAAAGTGATTCTTAAGAGG-AAA  995

seq1  TTTATCTTAATGACTTGCCATACAAAGTCTTTTGAT-ATCAAATTATGAT  1048
      |||||||||||||||   |||||||||||  ||||| |||||  ||||||
seq2  TTTATCTTAATGACT--GCATACAAAGTC-CTTGATAATCAATATATGAT  1042

seq1  TT-GTTCCCTTTTATTTTCTTTGAATTAAGT  1078
      || |||||||||||||||| ||||| |||||
seq2  TTGGTTCCCTTTTATTTTCCTTGAA-TAAGT  1072

seq1: chrX_36331159_36331690
seq2: B6Ng01-020E18.g_400_936 (reverse)

seq1  GGAGTAGAAGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTG  50
      ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||
seq2  GGAATAGAAGGCAGGAAATTATC-AACTCAGGGGTGAAA-CAACCCAGTG  48

seq1  GAAACAAGAAGAACTGT-TCAAAGAATCAACCAATCAAGGAGCTGGTTCT  99
      ||| ||| ||||||| | | ||||||||||||||||||||||||||||||
seq2  GAAGCAA-AAGAACTATATAAAAGAATCAACCAATCAAGGAGCTGGTTCT  97

seq1  TTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGG  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGAGAAAATCAACAAGATTGATAAACCCTTAGCCAGACTCACTAGAGGG  147

seq1  CACAGGG-AAAGCATCCTAATTAACAAAATCAGAAA--GAAAAGGGAGAC  196
      ||||||| ||||||||||||| |  ||||  |||||   |||||||||||
seq2  CACAGGGAAAAGCATCCTAATAATGAAAAAAAGAAATGAAAAAGGGAGAC  197

seq1  ATAACAACAGATCCTGAACAAATCCAAAACACCATCAGATCCTTCTACAA  246
      ||||||| |||||||||| ||||||| |||||||||||||||||||||||
seq2  ATAACAAAAGATCCTGAAGAAATCCATAACACCATCAGATCCTTCTACAA  247

seq1  AAGGCTATACTCAACAAAACT--GGAAAACCTGGATGAAATGGACAAGTT  294
      ||||||||||||||||||| |  | ||||||||||||||| |||||||||
seq2  AAGGCTATACTCAACAAAAATTGGAAAAACCTGGATGAAAGGGACAAGTT  297

seq1  TCTAGACAGATACCAGGTACCAAAGCTAAATCAAGATCAGGTTAATGATC  344
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  TCTAGACAGATACCATGTATCAAAGCTAAATCAAGATCAGGTTAATGATC  347

seq1  TCAACAGTCCTATATCCCCTCAAGAAATAGAAGCAGTAATTAATAGTCTC  394
      |||||||||||||||||||| |||||||||||||||| ||||||||| ||
seq2  TCAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTGTC  397

seq1  CCAGCGAA--AAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTAT  442
      ||||| ||  ||||||||||||||||||| ||||||||| ||||||||||
seq2  CCAGCCAAATAAAAAGCCCAGGACCAGACAGGTTTAGTGGAGAGTTCTAT  447

seq1  CAGACCTTCAAAGAAGACCTAATTCCAGTTCTGCACAAACTATTCCACAA  492
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  CAGACCTTCAAAGAAGACCTAATTCCAGCTCTTCACAAACTATTCCACAA  497

seq1  AATAGAAACGGAAGGTACTCTACCCAACTCATTCTATGAA  532
      |||||||||| |||||||||||||||||||||||||||||
seq2  AATAGAAACGAAAGGTACTCTACCCAACTCATTCTATGAA  537