BAC Information

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BAC

Clone NameB6Ng01-020I10
Chromosome6 (Build37)
Map Location 116,436,261 - 116,579,887
singlet/doubletdoublet
Overlap geneOlfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422
Upstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432
Downstream geneRassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020I10.bB6Ng01-020I10.g
ACCDH853299DH853300
length1,069976
definitionDH853299|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I10, 5' end.DH853300|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,436,261 - 116,437,281)(116,578,904 - 116,579,887)
sequence
gaattcaaatgattactaataacttatcattatacccataaattaagtta
tccatcatttcttatcagagaagcttcttcattcagtgggcagtgattaa
cacaactgtccaaggtgcagagaataaaagatcgtggaatgttcaacatt
aaatggaacatctacattttacaactcttccctaggcttcggtatcattg
ctgaagggtgagcagaaaaattgtaagagccataggtggtggatgactat
aagaaaatagtgtcttccagatacagcagggtagttgcacatataacact
tacagaagttgtgttagcatgcacagacctgtgcaagaaaaaaaatacta
gtatggaaagagtcttctcagctgaggagccactaacagcttcttggaga
agtagagtcaggttgttgttgttttttgcttttgtttttgaatttagggt
atagcccctggtaggtgaaaagcccatatccatgagtacttaggtagcac
aaattagacttggtgagttaaaaaaagaggatgtcacaaagtaaagatct
gtagaaaaatgaggacactagaaggcatttcatctaaaagttaatatcac
aaaatggttaaattaccactagcaatcaatacatttagtgaaatcccaat
caaaatcagtgtcattcattctttagataaatcaagataataattctata
attcatatggaagtatgaaagtctgaattgccaaaataatgctaaaaaag
gaaccacactgacctcaagttacataacacagccatggtaacaagacata
atacttgaacaaaaccaaaaatatacatcagtggaatattttagaggaac
aagaaatgaaaccacacagctacacccatctgatatagtgtattgaccca
gggtctcatgtagcacaggctggtcttgaaattcacagtgtatctgggca
tgaccttgatcatctgaccctcctgtctctactctcgagtgctttgattg
caggtacataccacctgtccaggaagcaatggctcttgacaaagtgtcag
aaagttggaaaaagacttt
gaattcctctccaagctggggttcctgcccagtacactgaacgcattcat
tttcctctgataggagtggctgatgcaaagtcacggctctctcctcaaag
tcatgagttttattcagaggccaaacacaagtgatgatggcccagggaac
acagatttagattacccaaactccgcctttcaacctgcaaccaaattcat
gaaggtttgacagtaacagaacaaagaaagccataaatcaagatactttt
aaattcatttgtagaaacatcagagaggtgggttagagctctgtttagac
atctcagctatagatgtcatctaacatagtattcttggccttttgattgg
agaatgggattttgtgttttatctgtcaggatgttgcacatccttccata
gaagtggacaaggaatggatgcatcccaagatgaatactaattatgctct
ggacctgcaacatcccaacctctcttcaccaccgccgttttaatcaatca
gtcagcctgtgcggacagtgtcctccagaaatttcacgggccttttggtg
atataaggcgacccgtgaaaaacataagtaacaccttaggctgaagttat
ttctctagactagatactcagtactaagaatgcaatttacaagttggaac
gggctggtttgggggtggtgagcagaatctaacaaaggccagtttctgtg
taggtcgaccagaatagaaagagagcgggtaacaggccttaaggtccttg
gctctgccttctgagtggtaagagaggaacacaaaggaccaccggaagaa
tccgcaggatatggtggggtgggccggggaccatagagggtctctccgcc
tcttcctagagcggccggcagctccgcggctagcagctcgcacttccggc
gggcgagcgccgaggcgggcaccgtgcggttgccggtgagtatcggcctg
cggtctgcctgggccggtgttgggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116436261_116437281
seq2: B6Ng01-020I10.b_100_1113

seq1  CATTTCTTATCAGAGAAGCTTCTTCATTCAGTGGGCAGTGATTAACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTATCAGAGAAGCTTCTTCATTCAGTGGGCAGTGATTAACACAA  50

seq1  CTGTCCAAGGTGCAGAGAATAAAAGATCGTGGAATGTTCAACATTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAAGGTGCAGAGAATAAAAGATCGTGGAATGTTCAACATTAAATG  100

seq1  GAACATCTACATTTTACAACTCTTCCCTAGGCTTCGGTATCATTGCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTACATTTTACAACTCTTCCCTAGGCTTCGGTATCATTGCTGAA  150

seq1  GGGTGAGCAGAAAAATTGTAAGAGCCATAGGTGGTGGATGACTATAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGCAGAAAAATTGTAAGAGCCATAGGTGGTGGATGACTATAAGAA  200

seq1  AATAGTGTCTTCCAGATACAGCAGGGTAGTTGCACATATAACACTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTCTTCCAGATACAGCAGGGTAGTTGCACATATAACACTTACAG  250

seq1  AAGTTGTGTTAGCATGCACAGACCTGTGCAAGAAAAAAAATACTAGTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGTTAGCATGCACAGACCTGTGCAAGAAAAAAAATACTAGTATG  300

seq1  GAAAGAGTCTTCTCAGCTGAGGAGCCACTAACAGCTTCTTGGAGAAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTCTTCTCAGCTGAGGAGCCACTAACAGCTTCTTGGAGAAGTAG  350

seq1  AGTCAGGTTGTTGTTGTTTTTTGCTTTTGTTTTTGAATTTAGGGTATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTTGTTGTTGTTTTTTGCTTTTGTTTTTGAATTTAGGGTATAGC  400

seq1  CCCTGGTAGGTGAAAAGCCCATATCCATGAGTACTTAGGTAGCACAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAGGTGAAAAGCCCATATCCATGAGTACTTAGGTAGCACAAATT  450

seq1  AGACTTGGTGAGTTAAAAAAAGAGGATGTCACAAAGTAAAGATCTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGTGAGTTAAAAAAAGAGGATGTCACAAAGTAAAGATCTGTAGA  500

seq1  AAAATGAGGACACTAGAAGGCATTTCATCTAAAAGTTAATATCACAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGACACTAGAAGGCATTTCATCTAAAAGTTAATATCACAAAAT  550

seq1  GGTTAAATTACCACTAGCAATCAATACATTTAGTGAAATCCCAATCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATTACCACTAGCAATCAATACATTTAGTGAAATCCCAATCAAAA  600

seq1  TCAGTGTCATTCATTCTTTAGATAAATCAAGATAATAATTCTATAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCATTCATTCTTTAGATAAATCAAGATAATAATTCTATAATTCA  650

seq1  TATGGAAGTATGAAAGTCTGAATTGCCAAAATAATGCTAAAAAAGGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGTATGAAAGTCTGAATTGCCAAAATAATGCTAAAAAAGGAACC  700

seq1  ACACTGACCTCAAGTTACATAACACAGCCATGGTAACAAGACATAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACCTCAAGTTACATAACACAGCCATGGTAACAAGACATAATACT  750

seq1  TGAACAAAACCAAAAATATACATCAGTGGAATATTTTAGAGGAACAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAACCAAAAATATACATCAGTGGAATATTTTAGAGGAACAAGAA  800

seq1  ATGAAACCACACAGCTACACCCATCTGATATAGTGTATTGACCCAGGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCACACAGCTACACCCATCTGATATAGTGTATTGACCCAGGGTC  850

seq1  TCATGTAGCACAGGCTGGTCTTGAAATTCACAGTGTATCTGGGCATGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCACAGGCTGGTCTTGAAATTCACAGTGTATCTGGGCATGACC  900

seq1  TTGATCATCTGACCCTCCTGTCTCTAACTCTCGAGTGCTTTGATTGCAGG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGATCATCTGACCCTCCTGTCTCT-ACTCTCGAGTGCTTTGATTGCAGG  949

seq1  TACATACCACCTGTCCCAGGAAGCCAATGGGCTCTTGACAAAGTGTCAAG  1000
      |||||||||||||| |||||||| |||| |||||||||||||||||| ||
seq2  TACATACCACCTGT-CCAGGAAG-CAAT-GGCTCTTGACAAAGTGTC-AG  995

seq1  AGATGTTGGAGAAAAGACTTT  1021
      | | |||||| ||||||||||
seq2  A-AAGTTGGA-AAAAGACTTT  1014

seq1: chr6_116578904_116579887
seq2: B6Ng01-020I10.g_66_1041 (reverse)

seq1  GACCCAACACCGGCCCAGGCAGACCCGCAGGCCCCGCGTACTCACCGCGC  50
      ||||||||||||||||||||||| |||||||||     ||||||||| ||
seq2  GACCCAACACCGGCCCAGGCAGA-CCGCAGGCC---GATACTCACCG-GC  45

seq1  AGGCCGCCACGGTGCCCGCCTCGCGCCTCGCCCGCCGGAAGTGCGGGCTG  100
      |  ||| ||||||||||||||||   ||||||||||||||||||| ||||
seq2  A-ACCG-CACGGTGCCCGCCTCGGCGCTCGCCCGCCGGAAGTGCGAGCTG  93

seq1  CTAGCCGCGGAGCTGCCGGCCGCTCTAGGAAGAGGCGGAGAGACCCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCGCGGAGCTGCCGGCCGCTCTAGGAAGAGGCGGAGAGACCCTCTA  143

seq1  TGGTCCCCGGCCCACCCCACCATATCCTGCGGATTCTTCCGGTGGTCCTT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGTCCCCGGCCCACCCCACCATATCCTGCGGATTCTTCCGGTGGTCC-T  192

seq1  TTGTGTTCCTCTCTTACCACTCAGAAGGCAGAGCCAAGGACCTTAAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCCTCTCTTACCACTCAGAAGGCAGAGCCAAGGACCTTAAGGCC  242

seq1  TGTTACCCGCTCTCTTTCTATTCTGGTCGACCTACACAGAAACTGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCCGCTCTCTTTCTATTCTGGTCGACCTACACAGAAACTGGCCTT  292

seq1  TGTTAGATTCTGCTCACCACCCCCAAACCAGCCCGTTCCAACTTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATTCTGCTCACCACCCCCAAACCAGCCCGTTCCAACTTGTAAAT  342

seq1  TGCATTCTTAGTACTGAGTATCTAGTCTAGAGAAATAACTTCAGCCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTTAGTACTGAGTATCTAGTCTAGAGAAATAACTTCAGCCTAAG  392

seq1  GTGTTACTTATGTTTTTCACGGGTCGCCTTATATCACCAAAAGGCCCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTTATGTTTTTCACGGGTCGCCTTATATCACCAAAAGGCCCGTG  442

seq1  AAATTTCTGGAGGACACTGTCCGCACAGGCTGACTGATTGATTAAAACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGGAGGACACTGTCCGCACAGGCTGACTGATTGATTAAAACGG  492

seq1  CGGTGGTGAAGAGAGGTTGGGATGTTGCAGGTCCAGAGCATAATTAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTGAAGAGAGGTTGGGATGTTGCAGGTCCAGAGCATAATTAGTAT  542

seq1  TCATCTTGGGATGCATCCATTCCTTGTCCACTTCTATGGAAGGATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGGGATGCATCCATTCCTTGTCCACTTCTATGGAAGGATGTGCA  592

seq1  ACATCCTGACAGATAAAACACAAAATCCCATTCTCCAATCAAAAGGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGACAGATAAAACACAAAATCCCATTCTCCAATCAAAAGGCCAA  642

seq1  GAATACTATGTTAGATGACATCTATAGCTGAGATGTCTAAACAGAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTATGTTAGATGACATCTATAGCTGAGATGTCTAAACAGAGCTCT  692

seq1  AACCCACCTCTCTGATGTTTCTACAAATGAATTTAAAAGTATCTTGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCTCTCTGATGTTTCTACAAATGAATTTAAAAGTATCTTGATTT  742

seq1  ATGGCTTTCTTTGTTCTGTTACTGTCAAACCTTCATGAATTTGGTTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCTTTGTTCTGTTACTGTCAAACCTTCATGAATTTGGTTGCAG  792

seq1  GTTGAAAGGCGGAGTTTGGGTAATCTAAATCTGTGTTCCCTGGGCCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGGCGGAGTTTGGGTAATCTAAATCTGTGTTCCCTGGGCCATCA  842

seq1  TCACTTGTGTTTGGCCTCTGAATAAAACTCATGACTTTGAGGAGAGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTGTTTGGCCTCTGAATAAAACTCATGACTTTGAGGAGAGAGCC  892

seq1  GTGACTTTGCATCAGCCACTCCTATCAGAGGAAAATGAATGCGTTCAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTGCATCAGCCACTCCTATCAGAGGAAAATGAATGCGTTCAGTG  942

seq1  TACTGGGCAGGAACCCCAGCTTGGAGAGGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  TACTGGGCAGGAACCCCAGCTTGGAGAGGAATTC  976